Wall clock time and date at job start Tue Mar 31 2020 08:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46904 * 109.47051 * 2 1 4 4 C 1.46891 * 111.00390 * 301.03252 * 3 2 1 5 5 C 1.50702 * 109.47502 * 288.95786 * 4 3 2 6 6 H 1.08004 * 119.99258 * 4.98778 * 5 4 3 7 7 C 1.37874 * 120.00538 * 184.98349 * 5 4 3 8 8 N 1.31514 * 119.99607 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00247 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47138 * 120.00400 * 9 7 5 12 12 H 1.48502 * 109.47353 * 240.00381 * 9 7 5 13 13 C 1.46897 * 110.99710 * 64.99032 * 3 2 1 14 14 C 1.50704 * 109.47630 * 66.04699 * 13 3 2 15 15 O 1.21287 * 119.99365 * 359.97438 * 14 13 3 16 16 N 1.34775 * 120.00350 * 180.02562 * 14 13 3 17 17 C 1.39971 * 120.00253 * 185.52613 * 16 14 13 18 18 C 1.38849 * 120.07215 * 24.82051 * 17 16 14 19 19 C 1.38121 * 119.94070 * 180.02562 * 18 17 16 20 20 C 1.38294 * 120.09186 * 359.97438 * 19 18 17 21 21 C 1.38252 * 120.14958 * 0.02562 * 20 19 18 22 22 C 1.38232 * 120.06050 * 359.97438 * 21 20 19 23 23 Cl 1.73593 * 120.04826 * 179.97438 * 22 21 20 24 24 H 1.09011 * 109.47276 * 305.03393 * 1 2 3 25 25 H 1.08999 * 109.47552 * 65.03833 * 1 2 3 26 26 H 1.09003 * 109.47388 * 185.04216 * 1 2 3 27 27 H 1.09000 * 109.47544 * 240.00317 * 2 1 3 28 28 H 1.08994 * 109.47513 * 120.00125 * 2 1 3 29 29 H 1.09005 * 109.46946 * 48.95625 * 4 3 2 30 30 H 1.08998 * 109.47432 * 168.95222 * 4 3 2 31 31 H 0.96997 * 119.99754 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47256 * 306.03894 * 13 3 2 33 33 H 1.09004 * 109.46916 * 186.04690 * 13 3 2 34 34 H 0.97001 * 119.99398 * 5.52291 * 16 14 13 35 35 H 1.08002 * 120.03254 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.95133 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.92349 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.96930 * 179.72449 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5286 2.1171 -1.1750 5 6 2.2221 1.6058 -2.4115 6 1 2.8940 0.7629 -2.3441 7 6 1.9990 2.2140 -3.6285 8 7 1.1812 3.2407 -3.7103 9 14 2.8592 1.5807 -5.1608 10 1 3.7207 0.4252 -4.8030 11 1 1.8445 1.1515 -6.1565 12 1 3.6960 2.6616 -5.7412 13 6 1.6484 2.0745 1.2428 14 6 2.3689 1.4396 2.4042 15 8 3.1176 0.5043 2.2151 16 7 2.1806 1.9103 3.6530 17 6 2.9352 1.3986 4.7150 18 6 4.1774 0.8270 4.4740 19 6 4.9194 0.3224 5.5240 20 6 4.4271 0.3864 6.8148 21 6 3.1908 0.9548 7.0591 22 6 2.4428 1.4617 6.0129 23 17 0.8902 2.1747 6.3199 24 1 -0.3634 0.5900 0.8415 25 1 -0.3634 0.4337 -0.9316 26 1 -0.3634 -1.0237 0.0903 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.4534 1.9671 -1.2733 30 1 1.7376 3.1800 -1.0544 31 1 1.0244 3.6688 -4.5665 32 1 0.5721 1.9945 1.3953 33 1 1.9281 3.1258 1.1726 34 1 1.5221 2.6037 3.8156 35 1 4.5626 0.7761 3.4664 36 1 5.8858 -0.1219 5.3368 37 1 5.0099 -0.0086 7.6339 38 1 2.8072 0.9992 8.0677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:14 Heat of formation + Delta-G solvation = -1.768679 kcal Electronic energy + Delta-G solvation = -21291.845729 eV Core-core repulsion = 17967.607180 eV Total energy + Delta-G solvation = -3324.238549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65779 -38.78964 -36.76689 -36.61498 -34.75312 -32.60058 -30.92610 -30.46410 -29.41072 -27.94336 -25.31100 -23.31385 -23.17997 -22.51836 -20.59682 -19.45840 -17.99046 -16.95578 -16.63641 -16.13630 -15.78671 -15.15327 -14.86577 -14.58734 -14.49252 -14.02820 -13.81316 -13.77476 -13.33808 -12.83997 -12.37242 -12.27098 -11.84840 -11.80922 -11.67121 -11.57677 -11.20802 -11.18290 -10.95240 -10.73112 -10.65145 -10.59961 -10.03776 -9.96915 -9.43204 -9.15660 -8.95261 -8.43754 -8.20327 -7.24645 -6.03530 -4.03480 0.93785 1.11622 1.88502 2.71449 2.93298 3.31873 3.39456 3.45548 3.55593 4.43046 4.56787 4.72958 4.86509 4.96811 5.07306 5.25438 5.27577 5.33401 5.59317 5.64272 5.68426 5.86015 5.97274 5.99794 6.00761 6.12642 6.23910 6.33935 6.46329 6.65229 6.76443 6.94359 7.18857 7.30811 7.34486 7.79391 8.03051 8.14724 8.24242 8.50286 9.04192 9.60378 11.07414 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026739 B = 0.003304 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.893112 B = 8471.589017 C = 8969.766059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 N -0.515 5.515 4 C 0.188 3.812 5 C -0.500 4.500 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.898 3.102 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.033 3.967 14 C 0.517 3.483 15 O -0.492 6.492 16 N -0.678 5.678 17 C 0.174 3.826 18 C -0.123 4.123 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.091 4.091 22 C -0.078 4.078 23 Cl -0.071 7.071 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.001 0.999 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.411 0.589 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 -2.515 21.709 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.074 4.074 3 N -0.239 5.239 4 C 0.063 3.937 5 C -0.539 4.539 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.098 4.098 14 C 0.305 3.695 15 O -0.364 6.364 16 N -0.324 5.324 17 C 0.077 3.923 18 C -0.144 4.144 19 C -0.110 4.110 20 C -0.156 4.156 21 C -0.110 4.110 22 C -0.107 4.107 23 Cl -0.042 7.042 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.019 0.981 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.248 0.752 35 H 0.176 0.824 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.284 -2.986 21.298 21.627 hybrid contribution -1.095 0.316 -0.655 1.315 sum 1.190 -2.670 20.642 20.848 Atomic orbital electron populations 1.22428 0.99743 1.00790 1.01944 1.22139 0.91483 0.91011 1.02770 1.62147 1.59482 1.02080 1.00203 1.19878 0.94194 0.93642 0.85964 1.21162 1.26091 1.15402 0.91246 0.91750 1.24966 0.95514 0.95067 0.99118 1.69958 1.36616 1.22166 1.25332 0.86440 0.79375 0.78878 0.82749 1.19604 1.21175 1.21050 1.22006 0.97696 0.99738 0.90403 1.21321 0.82191 0.83015 0.82928 1.90615 1.35619 1.26373 1.83833 1.43852 1.40596 1.41302 1.06632 1.17610 0.91435 0.97477 0.85802 1.21552 0.91765 0.99160 1.01901 1.21212 0.99825 0.97899 0.92103 1.21059 0.95806 1.01386 0.97313 1.20829 0.94430 0.97828 0.97879 1.20679 0.89492 1.06813 0.93714 1.98357 1.27492 1.82554 1.95811 0.94044 0.91243 0.93310 0.90155 0.91174 0.98136 0.95078 0.93020 0.92173 0.87941 0.75199 0.82440 0.85100 0.85248 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 9.22 37.15 0.34 -3.06 16 2 C 0.05 1.08 5.55 -3.83 -0.02 1.06 16 3 N -0.52 -10.97 4.40 -237.52 -1.05 -12.02 16 4 C 0.19 4.70 4.54 -4.98 -0.02 4.67 16 5 C -0.50 -13.90 8.67 -34.44 -0.30 -14.20 16 6 H 0.06 1.81 7.27 -52.48 -0.38 1.43 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.03 0.56 5.28 -4.98 -0.03 0.53 16 14 C 0.52 8.21 7.32 -10.98 -0.08 8.13 16 15 O -0.49 -9.19 11.51 5.55 0.06 -9.13 16 16 N -0.68 -8.69 5.19 -9.84 -0.05 -8.75 16 17 C 0.17 2.22 6.43 -83.65 -0.54 1.69 16 18 C -0.12 -1.60 8.72 -39.40 -0.34 -1.95 16 19 C -0.09 -0.94 10.04 -39.60 -0.40 -1.34 16 20 C -0.14 -1.20 10.04 -39.56 -0.40 -1.60 16 21 C -0.09 -0.85 9.82 -39.58 -0.39 -1.24 16 22 C -0.08 -0.86 6.34 -39.32 -0.25 -1.11 16 23 Cl -0.07 -0.71 27.79 -51.86 -1.44 -2.15 16 24 H 0.04 0.68 6.19 -51.92 -0.32 0.35 16 25 H 0.07 1.39 6.43 -51.93 -0.33 1.06 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.75 7.14 -51.93 -0.37 1.37 16 28 H 0.07 1.37 5.81 -51.93 -0.30 1.07 16 29 H 0.00 0.03 5.86 -51.93 -0.30 -0.28 16 30 H 0.03 0.83 7.83 -51.93 -0.41 0.42 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.06 0.92 6.08 -51.93 -0.32 0.61 16 33 H 0.10 1.61 7.87 -51.93 -0.41 1.20 16 34 H 0.41 4.35 7.76 -40.82 -0.32 4.03 16 35 H 0.16 2.36 5.79 -52.49 -0.30 2.06 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -30.90 325.12 -8.97 -39.86 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.59 Total: 3.18 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.52 Total: -6.99 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.36 Total: -46.31 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.06 Total: -9.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.44 Total: -2.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.90 -8.97 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.095 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds