Wall clock time and date at job start Tue Mar 31 2020 07:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 N 1.46500 * 109.47207 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99587 * 275.02882 * 4 3 2 6 6 H 1.08003 * 120.00568 * 9.30338 * 5 4 3 7 7 C 1.38817 * 120.00080 * 189.30438 * 5 4 3 8 8 N 1.31623 * 119.99991 * 25.05432 * 7 5 4 9 9 Si 1.86792 * 120.00091 * 205.05832 * 7 5 4 10 10 H 1.48504 * 109.47425 * 90.00209 * 9 7 5 11 11 H 1.48504 * 109.47289 * 209.99634 * 9 7 5 12 12 H 1.48497 * 109.47620 * 329.99548 * 9 7 5 13 13 C 1.46498 * 120.00426 * 95.02625 * 4 3 2 14 14 C 1.50704 * 109.46586 * 90.00089 * 13 4 3 15 15 O 1.21281 * 120.00415 * 359.97438 * 14 13 4 16 16 N 1.34786 * 119.99491 * 180.02562 * 14 13 4 17 17 C 1.39921 * 119.99895 * 174.84242 * 16 14 13 18 18 C 1.38908 * 120.06565 * 326.65111 * 17 16 14 19 19 C 1.38092 * 119.95722 * 179.72678 * 18 17 16 20 20 C 1.38288 * 120.08196 * 0.56831 * 19 18 17 21 21 C 1.38373 * 120.12666 * 359.70436 * 20 19 18 22 22 Cl 1.73601 * 119.97667 * 180.02562 * 21 20 19 23 23 C 1.38255 * 120.04660 * 359.97438 * 21 20 19 24 24 H 1.09003 * 109.46865 * 60.00078 * 1 2 3 25 25 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47066 * 300.00024 * 1 2 3 27 27 H 1.08998 * 109.47303 * 239.99541 * 2 1 3 28 28 H 1.08998 * 109.47345 * 119.99885 * 2 1 3 29 29 H 1.08994 * 109.47113 * 60.00005 * 3 2 1 30 30 H 1.09003 * 109.47131 * 299.99759 * 3 2 1 31 31 H 0.96990 * 120.00299 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47611 * 209.99934 * 13 4 3 33 33 H 1.09001 * 109.47187 * 330.00512 * 13 4 3 34 34 H 0.96998 * 120.00042 * 354.84557 * 16 14 13 35 35 H 1.08004 * 120.01560 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.95794 * 180.27888 * 19 18 17 37 37 H 1.07999 * 119.93536 * 179.72695 * 20 19 18 38 38 H 1.08000 * 120.03995 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3383 1.1805 6 1 3.6611 1.1061 2.0930 7 6 5.5646 1.5312 1.2050 8 7 6.1424 2.2673 0.2794 9 14 6.5941 0.7461 2.5514 10 1 7.0409 -0.6001 2.1116 11 1 7.7805 1.5959 2.8266 12 1 5.7796 0.6184 3.7865 13 6 4.2370 1.5538 -1.2647 14 6 4.4881 3.0074 -1.5733 15 8 4.0939 3.8658 -0.8126 16 7 5.1498 3.3535 -2.6954 17 6 5.2890 4.7031 -3.0374 18 6 4.2817 5.6074 -2.7258 19 6 4.4239 6.9399 -3.0593 20 6 5.5626 7.3730 -3.7136 21 6 6.5657 6.4741 -4.0308 22 17 7.9938 7.0221 -4.8516 23 6 6.4318 5.1400 -3.6934 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 7.1028 2.4018 0.2962 32 1 5.1895 1.0305 -1.1804 33 1 3.6476 1.1087 -2.0663 34 1 5.5295 2.6669 -3.2658 35 1 3.3897 5.2693 -2.2194 36 1 3.6427 7.6438 -2.8130 37 1 5.6694 8.4148 -3.9773 38 1 7.2149 4.4386 -3.9406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:29 Heat of formation + Delta-G solvation = 6.771015 kcal Electronic energy + Delta-G solvation = -21631.562965 eV Core-core repulsion = 18307.694725 eV Total energy + Delta-G solvation = -3323.868240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.72994 -37.94749 -36.36878 -35.76746 -33.76787 -32.99649 -30.67921 -30.46993 -29.42871 -26.91550 -25.59764 -22.87408 -22.51991 -21.76497 -20.35004 -19.47074 -17.60786 -16.76591 -16.02392 -15.85505 -15.18705 -14.81514 -14.42715 -14.28783 -13.88745 -13.56433 -13.35139 -13.15883 -13.01440 -12.88570 -12.40456 -11.73383 -11.63042 -11.51662 -11.38619 -11.22493 -11.07216 -10.79723 -10.77995 -10.71713 -10.45490 -10.21008 -9.89697 -9.84447 -9.63000 -8.89927 -8.56838 -8.35763 -7.58570 -7.00453 -5.89512 -3.14654 1.47372 1.56634 2.25517 3.36478 3.44615 3.46029 3.78588 3.85435 4.27212 4.49776 5.05282 5.21844 5.25843 5.35952 5.52485 5.58830 5.66203 5.67405 5.73480 5.95111 5.96248 6.15363 6.16061 6.32669 6.38482 6.40054 6.51523 6.58143 6.65021 6.70710 6.85678 6.87703 6.96007 7.10552 7.48842 7.73280 8.14532 8.34065 9.08021 9.44764 9.76850 10.18758 11.21407 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.004370 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.507949 B = 6405.090330 C = 7652.562080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.152 3.848 4 N -0.574 5.574 5 C -0.245 4.245 6 H 0.079 0.921 7 C -0.001 4.001 8 N -0.901 5.901 9 Si 0.903 3.097 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.165 3.835 14 C 0.528 3.472 15 O -0.504 6.504 16 N -0.690 5.690 17 C 0.198 3.802 18 C -0.124 4.124 19 C -0.088 4.088 20 C -0.149 4.149 21 C -0.012 4.012 22 Cl -0.084 7.084 23 C -0.156 4.156 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.400 0.600 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 2.989 -10.641 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.292 5.292 5 C -0.374 4.374 6 H 0.097 0.903 7 C -0.199 4.199 8 N -0.547 5.547 9 Si 0.734 3.266 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.034 3.966 14 C 0.315 3.685 15 O -0.375 6.375 16 N -0.336 5.336 17 C 0.100 3.900 18 C -0.145 4.145 19 C -0.107 4.107 20 C -0.169 4.169 21 C -0.039 4.039 22 Cl -0.056 7.056 23 C -0.178 4.178 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.060 0.940 34 H 0.234 0.766 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.192 3.584 -10.022 11.112 hybrid contribution 1.294 -0.442 0.452 1.440 sum -1.898 3.141 -9.570 10.250 Atomic orbital electron populations 1.21726 0.97204 1.00503 1.01113 1.22095 0.93770 1.00503 1.01774 1.20799 0.84141 0.93285 0.99275 1.43935 0.99816 1.82932 1.02541 1.19253 0.89795 1.40766 0.87547 0.90345 1.24685 0.97402 0.99186 0.98589 1.69841 1.09992 1.37601 1.37226 0.86243 0.79914 0.79055 0.81413 1.21586 1.22084 1.20620 1.20692 0.98433 0.90189 0.87262 1.22621 0.74473 0.94281 0.77091 1.90525 1.49921 1.51863 1.45217 1.44293 1.58491 1.03996 1.26805 1.17751 0.91913 0.86254 0.94044 1.21296 0.99400 0.92947 1.00886 1.20925 0.97056 0.95558 0.97199 1.20828 0.94036 0.99142 1.02899 1.20542 0.89171 0.93831 1.00354 1.98339 1.39362 1.90066 1.77798 1.20731 0.97520 0.94397 1.05111 0.93409 0.93652 0.93188 0.92944 0.92025 0.93706 0.94531 0.93545 0.87826 0.93967 0.76551 0.84389 0.85392 0.85652 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.14 -2.37 6.23 -26.73 -0.17 -2.54 16 3 C 0.15 3.03 5.67 -4.04 -0.02 3.01 16 4 N -0.57 -13.53 2.03 -174.61 -0.35 -13.88 16 5 C -0.24 -6.46 9.69 -15.06 -0.15 -6.60 16 6 H 0.08 2.07 7.95 -52.48 -0.42 1.65 16 7 C 0.00 -0.04 4.88 -17.43 -0.09 -0.12 16 8 N -0.90 -24.64 8.94 55.49 0.50 -24.15 16 9 Si 0.90 21.45 29.62 -169.99 -5.04 16.42 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.17 3.57 5.41 -5.19 -0.03 3.54 16 14 C 0.53 11.65 5.61 -10.98 -0.06 11.59 16 15 O -0.50 -13.18 13.79 5.56 0.08 -13.10 16 16 N -0.69 -12.46 5.34 -9.86 -0.05 -12.52 16 17 C 0.20 3.50 6.28 -83.70 -0.53 2.98 16 18 C -0.12 -2.19 8.66 -39.39 -0.34 -2.53 16 19 C -0.09 -1.30 10.04 -39.62 -0.40 -1.70 16 20 C -0.15 -2.08 9.83 -39.51 -0.39 -2.47 16 21 C -0.01 -0.18 6.32 -39.53 -0.25 -0.43 16 22 Cl -0.08 -1.10 28.95 -51.86 -1.50 -2.60 16 23 C -0.16 -2.46 9.74 -39.36 -0.38 -2.84 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.04 0.70 8.03 -51.93 -0.42 0.28 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.10 2.40 6.36 -51.93 -0.33 2.07 16 33 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.40 5.91 8.82 -40.82 -0.36 5.55 16 35 H 0.14 2.65 6.41 -52.48 -0.34 2.32 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -30.39 335.18 -8.96 -39.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.22 Total: 5.18 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.43 Total: 0.25 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.09 Total: -50.55 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.04 Total: 16.42 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.39 -8.96 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.120 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds