Wall clock time and date at job start Tue Mar 31 2020 07:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47193 * 2 1 4 4 H 1.08996 * 109.46818 * 304.99897 * 3 2 1 5 5 C 1.50696 * 109.47006 * 185.00046 * 3 2 1 6 6 H 1.08004 * 119.99963 * 239.99960 * 5 3 2 7 7 C 1.37877 * 120.00398 * 59.99524 * 5 3 2 8 8 N 1.31507 * 120.00168 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99682 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47084 * 269.99680 * 9 7 5 11 11 H 1.48499 * 109.47282 * 29.99948 * 9 7 5 12 12 H 1.48503 * 109.47000 * 149.99758 * 9 7 5 13 13 N 1.46497 * 109.47006 * 64.99916 * 3 2 1 14 14 C 1.34782 * 119.99982 * 274.99993 * 13 3 2 15 15 O 1.21584 * 119.99707 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99762 * 180.02562 * 14 13 3 17 17 C 1.39956 * 119.99842 * 174.68674 * 16 14 13 18 18 C 1.38889 * 120.05899 * 326.56244 * 17 16 14 19 19 C 1.38109 * 119.95074 * 179.76809 * 18 17 16 20 20 C 1.38274 * 120.08319 * 0.50444 * 19 18 17 21 21 C 1.50705 * 119.93722 * 179.72117 * 20 19 18 22 22 C 1.38384 * 120.12670 * 359.74751 * 20 19 18 23 23 Cl 1.73593 * 119.97695 * 179.97438 * 22 20 19 24 24 C 1.38247 * 120.04140 * 359.97438 * 22 20 19 25 25 H 1.09003 * 109.47064 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47021 * 300.00335 * 1 2 3 27 27 H 1.08994 * 109.46916 * 60.00081 * 1 2 3 28 28 H 1.08994 * 109.47090 * 239.99549 * 2 1 3 29 29 H 1.09001 * 109.47079 * 119.99543 * 2 1 3 30 30 H 0.97000 * 119.99871 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00250 * 95.00140 * 13 3 2 32 32 H 0.96992 * 120.00245 * 354.68640 * 16 14 13 33 33 H 1.08005 * 120.02871 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.95446 * 180.25147 * 19 18 17 35 35 H 1.08990 * 109.47284 * 270.02545 * 21 20 19 36 36 H 1.09001 * 109.46503 * 30.02324 * 21 20 19 37 37 H 1.08995 * 109.46730 * 150.01899 * 21 20 19 38 38 H 1.08003 * 120.03752 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8889 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 5.4540 0.8803 -1.3362 9 14 3.0964 0.1099 -2.5706 10 1 2.8745 -1.3261 -2.2644 11 1 1.7882 0.8093 -2.6395 12 1 3.7942 0.2358 -3.8754 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3415 2.6319 0.4320 16 7 0.0788 3.2674 2.5184 17 6 -1.1390 3.9520 2.6020 18 6 -1.6429 4.6139 1.4898 19 6 -2.8472 5.2847 1.5735 20 6 -3.5467 5.3070 2.7660 21 6 -4.8575 6.0453 2.8554 22 6 -3.0452 4.6531 3.8778 23 17 -3.9264 4.6841 5.3731 24 6 -1.8430 3.9751 3.7982 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.8770 0.4825 -2.1131 31 1 2.2719 2.1232 1.9977 32 1 0.6663 3.2269 3.2891 33 1 -1.0949 4.6012 0.5591 34 1 -3.2410 5.7960 0.7076 35 1 -4.6736 7.0773 3.1538 36 1 -5.3498 6.0305 1.8830 37 1 -5.4970 5.5619 3.5939 38 1 -1.4519 3.4644 4.6658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:36 Heat of formation + Delta-G solvation = -12.386040 kcal Electronic energy + Delta-G solvation = -21400.553213 eV Core-core repulsion = 18075.854261 eV Total energy + Delta-G solvation = -3324.698952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50223 -38.95235 -36.69542 -35.79429 -34.56259 -32.60986 -31.93206 -30.93263 -30.73844 -27.66127 -26.17944 -23.12965 -22.81874 -22.02621 -20.77009 -19.90071 -18.48732 -17.73988 -16.42634 -15.88819 -15.67165 -15.37707 -14.96782 -14.38061 -14.27670 -14.14573 -13.71901 -13.48314 -13.23674 -12.79345 -12.51353 -12.44210 -12.03687 -11.96709 -11.87777 -11.63755 -11.38882 -11.13050 -10.98504 -10.92723 -10.66483 -10.11806 -9.93346 -9.69259 -9.45020 -9.26719 -8.86918 -8.80528 -8.24162 -7.88610 -6.25237 -4.28283 1.14286 1.17670 1.97106 2.99347 3.21025 3.33281 3.37839 3.38083 3.80683 4.27866 4.60328 4.71144 4.77603 5.06291 5.08549 5.18136 5.40393 5.46612 5.55511 5.62012 5.80545 5.94768 6.00776 6.08218 6.13845 6.23401 6.35805 6.47571 6.60471 6.67237 6.77964 6.89127 6.98178 7.07292 7.24162 7.41701 7.46599 8.20861 8.53083 8.72989 8.99455 9.35278 10.86726 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.033277 B = 0.003286 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.229960 B = 8519.977820 C = 8689.934978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.260 3.740 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.294 1.294 13 N -0.709 5.709 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.694 5.694 17 C 0.192 3.808 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.105 4.105 21 C -0.114 4.114 22 C -0.016 4.016 23 Cl -0.074 7.074 24 C -0.146 4.146 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.405 0.595 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.344 7.860 10.843 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.156 3.844 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.221 1.221 13 N -0.360 5.360 14 C 0.395 3.605 15 O -0.453 6.453 16 N -0.342 5.342 17 C 0.095 3.905 18 C -0.133 4.133 19 C -0.107 4.107 20 C -0.106 4.106 21 C -0.170 4.170 22 C -0.043 4.043 23 Cl -0.045 7.045 24 C -0.168 4.168 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.240 0.760 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.840 7.712 9.926 21.014 hybrid contribution 0.261 -0.667 0.199 0.743 sum -16.579 7.045 10.125 20.665 Atomic orbital electron populations 1.21855 0.96828 0.98961 1.02308 1.22318 0.94451 0.99998 1.01123 1.19088 0.95471 0.88221 0.81630 0.93150 1.21025 0.88514 1.39992 1.07948 0.90180 1.24816 0.94875 0.95090 0.97654 1.69858 1.08704 1.44369 1.29844 0.86905 0.80966 0.79994 0.80891 1.20203 1.18386 1.22124 1.45464 1.13175 1.58578 1.18825 1.16047 0.83455 0.78635 0.82315 1.90909 1.51715 1.64478 1.38240 1.42815 1.20010 1.56118 1.15218 1.17295 0.86504 0.92890 0.93854 1.21397 0.96984 0.95501 0.99389 1.20874 0.94365 0.98837 0.96610 1.19672 0.98281 1.00375 0.92318 1.20795 0.93475 0.99768 1.02985 1.20370 0.94239 1.02381 0.87341 1.98343 1.75634 1.97615 1.32902 1.20627 0.94329 1.03327 0.98508 0.95070 0.92977 0.92833 0.92703 0.92324 0.92210 0.77383 0.75950 0.83672 0.84966 0.91062 0.91310 0.91155 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.14 -3.04 5.11 -26.73 -0.14 -3.18 16 3 C 0.26 5.92 1.83 -69.08 -0.13 5.80 16 4 H 0.05 1.28 6.63 -51.93 -0.34 0.93 16 5 C -0.54 -14.07 9.31 -34.44 -0.32 -14.39 16 6 H 0.08 2.21 7.98 -52.48 -0.42 1.79 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 9 Si 0.88 21.32 24.41 -169.99 -4.15 17.17 16 10 H -0.28 -6.46 6.83 56.52 0.39 -6.07 16 11 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 N -0.71 -13.26 5.03 -59.81 -0.30 -13.56 16 14 C 0.69 12.41 6.87 -86.92 -0.60 11.81 16 15 O -0.58 -11.98 11.17 5.29 0.06 -11.92 16 16 N -0.69 -9.53 5.35 -14.23 -0.08 -9.61 16 17 C 0.19 2.61 6.28 -83.69 -0.53 2.09 16 18 C -0.11 -1.59 8.65 -39.39 -0.34 -1.93 16 19 C -0.09 -1.04 9.69 -39.62 -0.38 -1.42 16 20 C -0.10 -1.16 5.88 -104.55 -0.62 -1.77 16 21 C -0.11 -0.96 9.61 36.01 0.35 -0.61 16 22 C -0.02 -0.19 6.31 -39.52 -0.25 -0.44 16 23 Cl -0.07 -0.75 27.28 -51.86 -1.41 -2.16 16 24 C -0.15 -1.73 9.74 -39.36 -0.38 -2.11 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.03 5.64 -51.92 -0.29 0.74 16 27 H 0.05 1.13 7.84 -51.93 -0.41 0.72 16 28 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.39 6.39 8.56 -40.82 -0.35 6.04 16 32 H 0.41 4.24 8.83 -40.82 -0.36 3.88 16 33 H 0.15 2.34 6.43 -52.48 -0.34 2.00 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 37 H 0.07 0.58 6.89 -51.93 -0.36 0.23 16 38 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -30.18 319.88 -8.15 -38.33 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.75 Total: 8.69 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.11 Total: -6.59 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.40 Total: -48.34 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.06 Total: -11.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.18 -8.15 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.944 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds