Wall clock time and date at job start Tue Mar 31 2020 08:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47269 * 2 1 4 4 C 1.50702 * 109.47193 * 239.99923 * 2 1 3 5 5 H 1.07996 * 120.00163 * 239.99428 * 4 2 1 6 6 C 1.37876 * 119.99706 * 60.00353 * 4 2 1 7 7 N 1.31513 * 120.00103 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99879 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47075 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.46928 * 299.99265 * 8 6 4 11 11 H 1.48501 * 109.47458 * 59.99700 * 8 6 4 12 12 N 1.46906 * 109.47217 * 120.00389 * 2 1 3 13 13 C 1.46903 * 110.99767 * 176.04953 * 12 2 1 14 14 C 1.46904 * 110.99437 * 299.99555 * 12 2 1 15 15 C 1.50706 * 109.46673 * 170.00052 * 14 12 2 16 16 O 1.21286 * 120.00132 * 0.02562 * 15 14 12 17 17 N 1.34772 * 119.99810 * 180.02562 * 15 14 12 18 18 C 1.39922 * 120.00046 * 174.72744 * 17 15 14 19 19 C 1.38901 * 120.06357 * 326.54678 * 18 17 15 20 20 C 1.38101 * 119.95310 * 179.72496 * 19 18 17 21 21 C 1.38280 * 120.08348 * 0.56665 * 20 19 18 22 22 C 1.38378 * 120.12878 * 359.70634 * 21 20 19 23 23 Cl 1.73595 * 119.97695 * 180.02562 * 22 21 20 24 24 C 1.38248 * 120.04218 * 359.97438 * 22 21 20 25 25 H 1.08996 * 109.46877 * 299.99584 * 1 2 3 26 26 H 1.08995 * 109.47476 * 59.99997 * 1 2 3 27 27 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99978 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47540 * 59.99741 * 13 12 2 30 30 H 1.08997 * 109.46543 * 179.97438 * 13 12 2 31 31 H 1.08999 * 109.46822 * 299.99394 * 13 12 2 32 32 H 1.08992 * 109.47516 * 289.99959 * 14 12 2 33 33 H 1.09005 * 109.46627 * 50.00727 * 14 12 2 34 34 H 0.97001 * 120.00315 * 354.72765 * 17 15 14 35 35 H 1.08001 * 120.02225 * 359.97438 * 19 18 17 36 36 H 1.08001 * 119.95882 * 180.27753 * 20 19 18 37 37 H 1.08005 * 119.93409 * 179.72987 * 21 20 19 38 38 H 1.08000 * 120.03779 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 1.8260 -0.4205 -5.2204 10 1 3.8063 -1.1208 -4.0082 11 1 1.8258 -2.5202 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6159 16 8 2.4163 -1.9573 3.4647 17 7 1.5142 -0.4800 4.8525 18 6 1.7006 -1.3288 5.9491 19 6 1.5569 -2.7021 5.7984 20 6 1.7470 -3.5382 6.8810 21 6 2.0686 -3.0091 8.1174 22 6 2.2071 -1.6410 8.2727 23 17 2.6116 -0.9810 9.8265 24 6 2.0245 -0.7996 7.1910 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7082 1.1609 -3.4844 29 1 3.9187 0.2051 1.1591 30 1 3.8209 -1.3109 2.0862 31 1 3.8030 -1.3531 0.3066 32 1 2.0519 0.9345 2.5280 33 1 0.4722 0.1323 2.3563 34 1 1.1376 0.4045 4.9823 35 1 1.3007 -3.1160 4.8343 36 1 1.6397 -4.6063 6.7628 37 1 2.2125 -3.6649 8.9634 38 1 2.1330 0.2680 7.3122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058575441.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:29 Heat of formation + Delta-G solvation = 0.549316 kcal Electronic energy + Delta-G solvation = -21078.031995 eV Core-core repulsion = 17753.893962 eV Total energy + Delta-G solvation = -3324.138033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58354 -38.78000 -36.86368 -36.40486 -34.70057 -32.78402 -30.97488 -30.22092 -29.20883 -27.78720 -24.95092 -23.78305 -23.12170 -22.49586 -20.47077 -19.44399 -18.01732 -17.13948 -16.46240 -16.18639 -15.62472 -15.27385 -14.94794 -14.57016 -14.02164 -13.93911 -13.78587 -13.67094 -13.53895 -12.60539 -12.43146 -12.11453 -12.06959 -11.74488 -11.63045 -11.19504 -11.17559 -11.01254 -10.86488 -10.71220 -10.40653 -10.21389 -10.17377 -9.99047 -9.40751 -9.01475 -8.93781 -8.45477 -8.29058 -7.25942 -6.05059 -4.09024 0.98323 1.01613 1.84739 2.71616 2.99109 3.31895 3.35688 3.39667 3.52384 4.38830 4.57598 4.81681 4.86002 4.98360 5.01694 5.20045 5.27893 5.35886 5.48547 5.65852 5.73144 5.92706 6.06423 6.16091 6.25303 6.31176 6.39623 6.71698 6.74909 6.86613 6.95378 7.07250 7.28862 7.42877 7.62842 7.79568 8.10427 8.23834 8.26691 8.51731 8.97079 9.56065 11.02047 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.041619 B = 0.002725 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.606356 B =10274.599219 C =10498.052021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.519 5.519 13 C 0.033 3.967 14 C 0.033 3.967 15 C 0.515 3.485 16 O -0.494 6.494 17 N -0.683 5.683 18 C 0.173 3.827 19 C -0.118 4.118 20 C -0.086 4.086 21 C -0.134 4.134 22 C -0.015 4.015 23 Cl -0.074 7.074 24 C -0.146 4.146 25 H 0.007 0.993 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.261 0.739 29 H 0.007 0.993 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.411 0.589 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -1.858 21.130 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.244 5.244 13 C -0.115 4.115 14 C -0.098 4.098 15 C 0.303 3.697 16 O -0.366 6.366 17 N -0.330 5.330 18 C 0.078 3.922 19 C -0.138 4.138 20 C -0.105 4.105 21 C -0.153 4.153 22 C -0.043 4.043 23 Cl -0.045 7.045 24 C -0.167 4.167 25 H 0.026 0.974 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.247 0.753 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.056 -2.907 20.866 21.068 hybrid contribution 0.456 1.037 -0.602 1.283 sum 0.512 -1.870 20.264 20.356 Atomic orbital electron populations 1.21895 0.97684 0.99886 0.99889 1.19315 0.92340 0.92027 0.85596 0.98204 1.21097 1.31148 1.12387 0.89537 0.91714 1.24919 0.95162 0.95074 0.99038 1.69869 1.36885 1.23051 1.23616 0.86549 0.79117 0.79793 0.81902 1.21358 1.20301 1.20154 1.61922 1.10382 1.51736 1.00410 1.22349 0.87713 0.98808 1.02630 1.22036 1.03258 0.94544 0.90010 1.21357 0.77176 0.87749 0.83391 1.90672 1.38264 1.22852 1.84806 1.43796 1.64560 1.18851 1.05813 1.17606 0.97336 0.90653 0.86639 1.21391 1.00027 0.91900 1.00508 1.21023 0.97863 1.00225 0.91391 1.21001 1.02842 0.92927 0.98573 1.20565 1.03692 0.93406 0.86587 1.98367 1.92285 1.86241 1.27597 1.20709 1.04542 1.00303 0.91195 0.97447 0.89368 0.94427 0.92885 0.97496 0.92142 0.90461 0.92807 0.87377 0.75302 0.83811 0.84710 0.85044 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.76 37.16 0.33 -2.83 16 2 C 0.21 5.22 2.06 -68.86 -0.14 5.08 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 4 C -0.50 -13.65 7.93 -34.44 -0.27 -13.92 16 5 H 0.06 1.78 6.39 -52.49 -0.34 1.44 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.52 -11.14 4.36 -237.72 -1.04 -12.18 16 13 C 0.03 0.69 8.89 60.07 0.53 1.22 16 14 C 0.03 0.55 5.27 -4.97 -0.03 0.53 16 15 C 0.52 8.00 7.26 -10.98 -0.08 7.92 16 16 O -0.49 -9.31 12.03 5.55 0.07 -9.24 16 17 N -0.68 -7.98 5.34 -9.87 -0.05 -8.03 16 18 C 0.17 2.08 6.28 -83.70 -0.53 1.55 16 19 C -0.12 -1.48 8.65 -39.39 -0.34 -1.82 16 20 C -0.09 -0.89 10.04 -39.62 -0.40 -1.28 16 21 C -0.13 -1.29 9.83 -39.51 -0.39 -1.68 16 22 C -0.02 -0.16 6.32 -39.53 -0.25 -0.41 16 23 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 24 C -0.15 -1.52 9.74 -39.36 -0.38 -1.90 16 25 H 0.01 0.13 6.20 -51.93 -0.32 -0.19 16 26 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 1.20 5.82 -51.93 -0.30 0.90 16 31 H 0.08 1.71 6.23 -51.93 -0.32 1.38 16 32 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.11 1.69 5.83 -51.93 -0.30 1.39 16 34 H 0.41 3.42 8.82 -40.82 -0.36 3.06 16 35 H 0.14 2.07 6.43 -52.49 -0.34 1.73 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -30.27 326.00 -8.74 -39.01 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.69 Total: 1.91 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.04 Total: -6.03 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.46 Total: -44.57 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.27 -8.74 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058575441.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.561 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds