Wall clock time and date at job start Tue Mar 31 2020 08:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47662 * 2 1 4 4 C 1.46907 * 110.99601 * 288.74385 * 3 2 1 5 5 C 1.50698 * 109.46727 * 160.34867 * 4 3 2 6 6 O 1.21286 * 120.00024 * 354.05786 * 5 4 3 7 7 N 1.34779 * 119.99564 * 174.06585 * 5 4 3 8 8 C 1.37096 * 119.99859 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99914 * 359.97438 * 8 7 5 10 10 C 1.38955 * 119.99840 * 179.97438 * 8 7 5 11 11 N 1.31402 * 119.99921 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99598 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47248 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46860 * 120.00207 * 12 10 8 15 15 H 1.48493 * 109.47212 * 240.00164 * 12 10 8 16 16 C 1.46894 * 111.00028 * 164.78980 * 3 2 1 17 17 C 1.50700 * 109.47483 * 293.95025 * 16 3 2 18 18 C 1.38234 * 120.00849 * 104.99674 * 17 16 3 19 19 C 1.38212 * 120.01619 * 179.97438 * 18 17 16 20 20 C 1.38260 * 120.02708 * 0.04974 * 19 18 17 21 21 C 1.38193 * 120.01198 * 359.97438 * 20 19 18 22 22 C 1.38332 * 120.00758 * 284.73584 * 17 16 3 23 23 Cl 1.73605 * 120.01002 * 359.96655 * 22 17 16 24 24 H 1.09006 * 109.46871 * 307.35572 * 1 2 3 25 25 H 1.09003 * 109.47222 * 67.35141 * 1 2 3 26 26 H 1.08997 * 109.47582 * 187.35351 * 1 2 3 27 27 H 1.09004 * 109.47053 * 239.99523 * 2 1 3 28 28 H 1.09008 * 109.46811 * 120.00030 * 2 1 3 29 29 H 1.09001 * 109.46550 * 280.34630 * 4 3 2 30 30 H 1.09000 * 109.46907 * 40.34729 * 4 3 2 31 31 H 0.97005 * 120.00127 * 359.97438 * 7 5 4 32 32 H 0.97004 * 119.99787 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.47479 * 53.95531 * 16 3 2 34 34 H 1.09000 * 109.46967 * 173.95117 * 16 3 2 35 35 H 1.08005 * 119.99258 * 0.02562 * 18 17 16 36 36 H 1.08005 * 119.98814 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.99826 * 179.97438 * 20 19 18 38 38 H 1.08007 * 120.00690 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7798 2.0281 -1.2988 5 6 1.8329 3.5253 -1.1353 6 8 1.9415 4.0110 -0.0292 7 7 1.7595 4.3244 -2.2181 8 6 1.8084 5.6864 -2.0694 9 1 1.9053 6.1190 -1.0846 10 6 1.7332 6.5103 -3.1859 11 7 1.6159 5.9839 -4.3841 12 14 1.7991 8.3661 -2.9832 13 1 1.9331 8.7023 -1.5429 14 1 2.9662 8.9041 -3.7273 15 1 0.5511 8.9671 -3.5182 16 6 3.4429 1.4400 0.3598 17 6 3.6170 0.9983 1.7900 18 6 4.1342 -0.2529 2.0691 19 6 4.2944 -0.6580 3.3808 20 6 3.9366 0.1875 4.4146 21 6 3.4190 1.4383 4.1369 22 6 3.2643 1.8469 2.8240 23 17 2.6218 3.4213 2.4743 24 1 -0.3633 0.6236 0.8169 25 1 -0.3634 0.3957 -0.9484 26 1 -0.3634 -1.0192 0.1315 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 2.5455 1.7126 -2.0074 30 1 0.7976 1.7379 -1.6719 31 1 1.6729 3.9358 -3.1027 32 1 1.5631 6.5590 -5.1635 33 1 4.0094 0.7790 -0.2961 34 1 3.8066 2.4615 0.2482 35 1 4.4139 -0.9138 1.2620 36 1 4.6990 -1.6355 3.5983 37 1 4.0616 -0.1297 5.4394 38 1 3.1399 2.0989 4.9446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066494262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:06 Heat of formation + Delta-G solvation = -7.432986 kcal Electronic energy + Delta-G solvation = -21757.657675 eV Core-core repulsion = 18433.173504 eV Total energy + Delta-G solvation = -3324.484171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55740 -38.27753 -36.49555 -35.70036 -33.72585 -32.13171 -31.10651 -30.64556 -30.13250 -27.34629 -25.00479 -24.03683 -22.58437 -21.69004 -20.55999 -18.99725 -17.75461 -16.92110 -16.15145 -15.58902 -15.39862 -15.21234 -14.59645 -14.40895 -13.79735 -13.71119 -13.65018 -13.45561 -12.99976 -12.91810 -12.57672 -11.95531 -11.71980 -11.60730 -11.45745 -11.33529 -11.14326 -11.09429 -10.92104 -10.90643 -10.57216 -10.30167 -10.13732 -9.89390 -9.38602 -8.86338 -8.38545 -8.27880 -7.84154 -7.74437 -6.32816 -3.72263 1.29026 1.31039 2.80886 3.21265 3.31123 3.38187 3.64183 4.05494 4.13968 4.34316 4.79582 4.83652 4.97318 5.14102 5.22199 5.25883 5.34456 5.40722 5.49223 5.63771 5.66846 5.71319 5.80086 5.88794 5.93504 6.06568 6.15075 6.21143 6.29441 6.37926 6.41353 6.45576 6.56149 6.86400 7.33006 7.44086 7.63607 8.16992 8.74297 9.29568 9.67286 10.20935 10.85603 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.004394 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.430932 B = 6370.930352 C = 7171.343118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.502 5.502 4 C 0.044 3.956 5 C 0.444 3.556 6 O -0.556 6.556 7 N -0.573 5.573 8 C -0.290 4.290 9 H 0.102 0.898 10 C 0.019 3.981 11 N -0.906 5.906 12 Si 0.925 3.075 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.095 3.905 17 C -0.066 4.066 18 C -0.109 4.109 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.019 4.019 23 Cl -0.006 7.006 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.389 0.611 32 H 0.269 0.731 33 H 0.035 0.965 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -14.642 10.863 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.226 5.226 4 C -0.087 4.087 5 C 0.229 3.771 6 O -0.438 6.438 7 N -0.211 5.211 8 C -0.420 4.420 9 H 0.120 0.880 10 C -0.181 4.181 11 N -0.548 5.548 12 Si 0.753 3.247 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.032 4.032 17 C -0.067 4.067 18 C -0.128 4.128 19 C -0.147 4.147 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.047 4.047 23 Cl 0.024 6.976 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.222 0.778 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.133 -13.794 11.759 18.394 hybrid contribution 0.355 0.282 -1.249 1.328 sum 3.488 -13.512 10.510 17.470 Atomic orbital electron populations 1.21771 0.95010 1.00937 1.02663 1.22130 0.96267 0.89272 1.00258 1.61543 1.16065 1.15288 1.29679 1.21926 1.01689 0.95415 0.89690 1.19810 0.84243 0.87329 0.85704 1.90555 1.53166 1.75600 1.24437 1.41893 1.65158 1.06459 1.07624 1.19694 1.46373 0.80933 0.95000 0.88031 1.25200 0.97826 1.00369 0.94730 1.69619 1.51179 1.36027 0.97977 0.85863 0.77598 0.82741 0.78509 1.19356 1.20933 1.20911 1.21064 0.88997 1.02688 0.90432 1.19716 0.98394 0.93350 0.95283 1.21028 0.99703 0.95188 0.96847 1.21076 1.01137 0.99792 0.92673 1.21039 0.99264 0.93758 0.99205 1.21127 1.00915 0.97036 0.95141 1.21188 0.98937 0.90991 0.93545 1.98532 1.83471 1.21154 1.94468 0.91574 0.92785 0.92872 0.95384 0.90931 0.93641 0.89262 0.77793 0.92160 0.94729 0.88074 0.85891 0.86049 0.85827 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.83 37.16 0.37 -1.49 16 2 C 0.05 0.65 5.55 -3.83 -0.02 0.63 16 3 N -0.50 -8.22 3.90 -237.51 -0.93 -9.14 16 4 C 0.04 0.78 5.32 -4.97 -0.03 0.75 16 5 C 0.44 10.18 7.32 -10.99 -0.08 10.10 16 6 O -0.56 -13.98 11.94 5.55 0.07 -13.92 16 7 N -0.57 -14.39 5.29 -10.96 -0.06 -14.44 16 8 C -0.29 -8.06 9.68 -14.93 -0.14 -8.20 16 9 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 10 C 0.02 0.53 5.50 -17.47 -0.10 0.43 16 11 N -0.91 -24.93 13.05 55.50 0.72 -24.21 16 12 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.10 1.52 4.08 -4.98 -0.02 1.50 16 17 C -0.07 -0.96 4.48 -104.59 -0.47 -1.43 16 18 C -0.11 -1.28 8.69 -39.59 -0.34 -1.62 16 19 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 20 C -0.11 -1.22 10.05 -39.59 -0.40 -1.61 16 21 C -0.12 -1.58 9.83 -39.55 -0.39 -1.97 16 22 C -0.02 -0.29 6.31 -39.50 -0.25 -0.54 16 23 Cl -0.01 -0.11 24.50 -51.86 -1.27 -1.38 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.69 6.75 -51.93 -0.35 0.34 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.34 8.06 -51.93 -0.42 -0.08 16 28 H 0.07 0.93 6.16 -51.92 -0.32 0.61 16 29 H 0.05 0.74 8.00 -51.93 -0.42 0.33 16 30 H 0.09 1.47 6.31 -51.93 -0.33 1.14 16 31 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.03 0.48 7.93 -51.93 -0.41 0.07 16 34 H 0.10 1.92 6.33 -51.93 -0.33 1.59 16 35 H 0.12 1.20 8.00 -52.48 -0.42 0.78 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -30.22 327.60 -8.76 -38.98 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.94 Total: 8.01 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.27 Total: -5.20 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.26 Total: -47.80 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.92 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.27 Total: -1.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.22 -8.76 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066494262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.544 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds