Wall clock time and date at job start Tue Mar 31 2020 08:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47488 * 2 1 4 4 C 1.50707 * 109.47166 * 240.00159 * 2 1 3 5 5 C 1.38258 * 119.99305 * 280.23354 * 4 2 1 6 6 C 1.38222 * 120.02441 * 180.23056 * 5 4 2 7 7 C 1.38233 * 120.01479 * 359.78917 * 6 5 4 8 8 C 1.38326 * 119.98737 * 359.97438 * 7 6 5 9 9 Cl 1.73596 * 120.01848 * 180.02562 * 8 7 6 10 10 C 1.38190 * 119.99076 * 99.99483 * 4 2 1 11 11 N 1.46901 * 109.47655 * 120.00380 * 2 1 3 12 12 C 1.46896 * 111.00506 * 176.04641 * 11 2 1 13 13 C 1.46905 * 110.99840 * 300.00100 * 11 2 1 14 14 C 1.50690 * 109.47241 * 169.99545 * 13 11 2 15 15 O 1.21288 * 120.00445 * 0.02562 * 14 13 11 16 16 N 1.34781 * 120.00254 * 179.97438 * 14 13 11 17 17 C 1.37089 * 120.00541 * 180.02562 * 16 14 13 18 18 H 1.08007 * 119.99874 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00134 * 180.02562 * 17 16 14 20 20 N 1.31407 * 120.00490 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00070 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46865 * 89.99866 * 21 19 17 23 23 H 1.48492 * 109.47473 * 210.00325 * 21 19 17 24 24 H 1.48503 * 109.47069 * 330.00218 * 21 19 17 25 25 H 1.08996 * 109.47221 * 59.99565 * 1 2 3 26 26 H 1.09000 * 109.47030 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46599 * 299.99779 * 1 2 3 28 28 H 1.08002 * 119.98825 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.99267 * 179.76841 * 6 5 4 30 30 H 1.08002 * 120.00926 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.01169 * 0.03206 * 10 4 2 32 32 H 1.09001 * 109.47063 * 59.99652 * 12 11 2 33 33 H 1.08994 * 109.47191 * 179.97438 * 12 11 2 34 34 H 1.08998 * 109.47070 * 299.99672 * 12 11 2 35 35 H 1.09003 * 109.46921 * 289.99836 * 13 11 2 36 36 H 1.09007 * 109.46899 * 49.99155 * 13 11 2 37 37 H 0.97004 * 119.99379 * 0.02562 * 16 14 13 38 38 H 0.96996 * 120.00830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.0622 -2.0922 -1.2671 6 6 2.5273 -2.7443 -2.3936 7 6 2.9588 -2.0154 -3.4859 8 6 2.9246 -0.6330 -3.4518 9 17 3.4657 0.2833 -4.8234 10 6 2.4585 0.0194 -2.3239 11 7 2.0198 -0.6926 1.1994 12 6 3.4851 -0.7946 1.1870 13 6 1.5488 -0.0265 2.4211 14 6 1.8581 -0.8913 3.6158 15 8 2.4164 -1.9573 3.4646 16 7 1.5152 -0.4796 4.8526 17 6 1.7970 -1.2661 5.9395 18 1 2.2942 -2.2154 5.8048 19 6 1.4431 -0.8419 7.2144 20 7 0.8377 0.3129 7.3783 21 14 1.8264 -1.9139 8.6955 22 1 3.1706 -1.5669 9.2229 23 1 0.8065 -1.6844 9.7500 24 1 1.8072 -3.3425 8.2908 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.7250 -2.6622 -0.4139 29 1 2.5538 -3.8237 -2.4202 30 1 3.3226 -2.5250 -4.3659 31 1 2.4320 1.0988 -2.2965 32 1 3.9187 0.2051 1.1590 33 1 3.8210 -1.3109 2.0861 34 1 3.8030 -1.3532 0.3066 35 1 2.0520 0.9345 2.5280 36 1 0.4723 0.1323 2.3563 37 1 1.0690 0.3731 4.9735 38 1 0.5909 0.6092 8.2683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066495232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:28 Heat of formation + Delta-G solvation = -10.262650 kcal Electronic energy + Delta-G solvation = -21174.498629 eV Core-core repulsion = 17849.891754 eV Total energy + Delta-G solvation = -3324.606875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96448 -38.48483 -36.98520 -36.25262 -33.92484 -32.16035 -31.24346 -30.79019 -29.65954 -27.78287 -24.89339 -24.34695 -22.91783 -22.61666 -20.16681 -19.08864 -17.84555 -17.17194 -16.30649 -15.89559 -15.41868 -14.90429 -14.69610 -14.60900 -14.16235 -13.82843 -13.65177 -13.59303 -13.45406 -13.05338 -12.40800 -12.19021 -11.99759 -11.82145 -11.59836 -11.52563 -11.42079 -11.25297 -11.19611 -11.07509 -10.90910 -10.60022 -10.39153 -10.21739 -9.47583 -9.04266 -8.71349 -8.45315 -7.98163 -7.86613 -6.41691 -3.82407 1.07939 1.13452 1.96197 3.17582 3.26341 3.32040 3.50628 3.90630 3.96994 4.23690 4.51440 4.70728 4.94938 5.04785 5.16594 5.21575 5.27018 5.29742 5.32925 5.53525 5.61509 5.67419 5.75138 5.81248 5.93298 5.97525 6.00916 6.06963 6.23141 6.29950 6.31273 6.46398 6.58857 6.72091 7.26851 7.37751 7.55241 8.06553 8.62054 9.18370 9.54767 10.06623 10.76125 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.039171 B = 0.002811 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.634590 B = 9957.262928 C =10211.500376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.117 3.883 3 H 0.048 0.952 4 C -0.059 4.059 5 C -0.083 4.083 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.038 4.038 9 Cl -0.080 7.080 10 C -0.109 4.109 11 N -0.510 5.510 12 C 0.020 3.980 13 C 0.041 3.959 14 C 0.445 3.555 15 O -0.577 6.577 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.013 0.987 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.392 0.608 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 1.351 -19.908 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.059 4.059 5 C -0.101 4.101 6 C -0.130 4.130 7 C -0.134 4.134 8 C -0.064 4.064 9 Cl -0.051 7.051 10 C -0.128 4.128 11 N -0.234 5.234 12 C -0.127 4.127 13 C -0.090 4.090 14 C 0.231 3.769 15 O -0.461 6.461 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.194 1.194 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.031 0.969 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.225 0.775 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.114 0.330 -19.943 19.977 hybrid contribution 0.300 1.076 0.719 1.328 sum 1.415 1.406 -19.224 19.328 Atomic orbital electron populations 1.21915 0.93161 1.03246 1.01847 1.20588 0.95934 0.94691 0.87914 0.93462 1.19736 0.97862 0.94050 0.94284 1.21341 0.96645 0.94065 0.98052 1.21187 0.98775 1.00251 0.92798 1.21028 1.01027 0.91737 0.99657 1.20806 1.03745 0.92149 0.89745 1.98359 1.88773 1.74467 1.43518 1.20886 0.99746 1.00273 0.91907 1.61647 1.11391 1.50687 0.99671 1.22574 0.86357 0.99371 1.04444 1.21952 1.01480 0.95508 0.90055 1.19702 0.85163 0.88283 0.83769 1.90480 1.46334 1.24118 1.85208 1.41865 1.52778 1.20729 1.04786 1.19686 1.36079 1.02912 0.84055 0.87928 1.25251 0.96937 0.96704 0.99062 1.69605 1.40759 1.20008 1.24022 0.85871 0.77995 0.80106 0.80397 1.20455 1.20942 1.19406 0.92227 0.91280 0.91615 0.83905 0.85095 0.85333 0.85304 0.96871 0.88489 0.91974 0.93467 0.88871 0.77521 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.96 37.16 0.33 -1.31 16 2 C 0.12 1.49 2.28 -68.86 -0.16 1.33 16 3 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 4 C -0.06 -0.70 3.77 -104.63 -0.39 -1.10 16 5 C -0.08 -1.00 8.08 -39.58 -0.32 -1.32 16 6 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 7 C -0.12 -1.16 9.83 -39.55 -0.39 -1.55 16 8 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 9 Cl -0.08 -0.80 28.96 -51.86 -1.50 -2.30 16 10 C -0.11 -1.21 9.45 -39.55 -0.37 -1.58 16 11 N -0.51 -8.14 3.71 -237.73 -0.88 -9.02 16 12 C 0.02 0.33 8.77 60.06 0.53 0.86 16 13 C 0.04 0.71 5.26 -4.98 -0.03 0.69 16 14 C 0.45 10.26 7.47 -10.99 -0.08 10.18 16 15 O -0.58 -15.13 13.91 5.55 0.08 -15.05 16 16 N -0.56 -14.09 5.29 -10.97 -0.06 -14.15 16 17 C -0.30 -8.20 9.68 -14.94 -0.14 -8.34 16 18 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 21 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.74 6.20 -51.93 -0.32 0.42 16 28 H 0.14 1.91 7.72 -52.49 -0.41 1.50 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.28 8.04 -52.49 -0.42 0.85 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16 34 H 0.06 0.94 6.12 -51.93 -0.32 0.62 16 35 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.09 1.45 5.83 -51.93 -0.30 1.15 16 37 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -29.68 330.98 -8.30 -37.99 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.86 Total: 9.19 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.77 Total: -3.88 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.22 Total: -46.83 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.05 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.68 -8.30 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066495232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.724 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds