Wall clock time and date at job start Tue Mar 31 2020 07:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46987 * 2 1 4 4 N 1.46498 * 109.46990 * 119.99701 * 2 1 3 5 5 C 1.46509 * 119.99788 * 120.28008 * 4 2 1 6 6 C 1.50703 * 109.46957 * 90.00155 * 5 4 2 7 7 O 1.21294 * 119.99965 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99921 * 179.97438 * 6 5 4 9 9 C 1.37096 * 120.00126 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99755 * 0.02562 * 9 8 6 11 11 C 1.38946 * 120.00280 * 180.02562 * 9 8 6 12 12 N 1.31415 * 120.00090 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00164 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47103 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47222 * 120.00178 * 13 11 9 16 16 H 1.48500 * 109.47004 * 240.00171 * 13 11 9 17 17 C 1.39738 * 120.00487 * 300.28145 * 4 2 1 18 18 C 1.38898 * 120.05880 * 358.69039 * 17 4 2 19 19 C 1.38107 * 119.93736 * 179.72242 * 18 17 4 20 20 C 1.38385 * 120.06286 * 0.54712 * 19 18 17 21 21 Cl 1.73598 * 119.93758 * 179.70123 * 20 19 18 22 22 C 1.38376 * 120.12016 * 359.72760 * 20 19 18 23 23 C 1.38115 * 120.06331 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47364 * 304.66708 * 1 2 3 25 25 H 1.09005 * 109.47187 * 64.66717 * 1 2 3 26 26 H 1.09002 * 109.47239 * 184.66145 * 1 2 3 27 27 H 1.09000 * 109.47111 * 239.99931 * 2 1 3 28 28 H 1.09000 * 109.47335 * 188.91808 * 3 2 1 29 29 H 1.09003 * 109.47715 * 308.91395 * 3 2 1 30 30 H 1.08998 * 109.47531 * 68.91650 * 3 2 1 31 31 H 1.08993 * 109.47126 * 210.00026 * 5 4 2 32 32 H 1.08999 * 109.47312 * 330.00069 * 5 4 2 33 33 H 0.97002 * 120.00005 * 0.02562 * 8 6 5 34 34 H 0.96997 * 119.99845 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.03332 * 359.96971 * 18 17 4 36 36 H 1.07999 * 119.96999 * 180.25010 * 19 18 17 37 37 H 1.08000 * 119.96989 * 179.97438 * 22 20 19 38 38 H 1.08002 * 120.02822 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8656 -1.8782 1.0618 6 6 4.3130 -1.4604 1.0198 7 8 4.6077 -0.2861 1.0942 8 7 5.2798 -2.3915 0.8994 9 6 6.5965 -2.0115 0.8607 10 1 6.8589 -0.9659 0.9269 11 6 7.5933 -2.9713 0.7361 12 7 7.2741 -4.2435 0.6549 13 14 9.3874 -2.4535 0.6839 14 1 9.4794 -0.9754 0.7932 15 1 10.1164 -3.0794 1.8163 16 1 9.9927 -2.8942 -0.5985 17 6 1.6759 -0.2166 2.4654 18 6 0.8952 0.9249 2.5945 19 6 0.5535 1.3879 3.8500 20 6 0.9976 0.7221 4.9789 21 17 0.5726 1.3113 6.5556 22 6 1.7803 -0.4121 4.8533 23 6 2.1199 -0.8831 3.6001 24 1 -0.3634 0.5845 0.8452 25 1 -0.3634 0.4397 -0.9289 26 1 -0.3634 -1.0243 0.0835 27 1 1.8933 -0.5138 -0.8900 28 1 3.1182 1.4466 -0.1593 29 1 1.5525 2.0003 -0.7996 30 1 1.8125 1.9083 0.9588 31 1 2.7028 -2.5389 1.9132 32 1 2.6121 -2.4031 0.1408 33 1 5.0441 -3.3305 0.8395 34 1 7.9700 -4.9136 0.5683 35 1 0.5523 1.4477 1.7139 36 1 -0.0569 2.2731 3.9509 37 1 2.1259 -0.9296 5.7360 38 1 2.7312 -1.7682 3.5028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066497630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:16 Heat of formation + Delta-G solvation = 0.368702 kcal Electronic energy + Delta-G solvation = -21753.364396 eV Core-core repulsion = 18429.218531 eV Total energy + Delta-G solvation = -3324.145865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.01287 -38.11004 -36.87773 -35.78736 -33.98194 -32.78655 -31.27277 -30.52325 -29.51927 -27.03916 -26.62815 -24.40726 -22.54232 -22.25064 -20.34572 -19.26381 -17.98766 -17.09170 -16.19833 -16.09134 -15.70096 -14.84420 -14.61986 -14.18859 -14.03399 -13.75709 -13.58909 -13.32896 -13.17820 -12.88705 -12.46708 -12.30335 -12.24245 -11.86993 -11.60609 -11.51173 -11.45910 -11.14683 -11.02851 -10.97645 -10.63647 -10.38222 -10.27750 -10.10808 -9.57173 -9.56024 -8.80276 -8.45049 -8.02155 -6.98534 -6.46426 -3.87791 1.54231 1.63058 2.44664 3.12476 3.20646 3.24535 3.31937 3.81422 3.95561 4.15045 4.84066 4.95147 4.96822 5.09470 5.16932 5.24691 5.30655 5.46665 5.53410 5.54632 5.66935 5.71543 5.76014 5.86876 5.89775 5.97183 6.13451 6.19876 6.25469 6.33686 6.47464 6.55082 6.63852 6.86939 7.45762 7.50563 7.69109 8.00510 8.55188 9.12971 9.47597 9.98620 10.70453 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.004163 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.110581 B = 6724.822051 C = 7815.115803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.153 3.847 3 C -0.180 4.180 4 N -0.591 5.591 5 C 0.107 3.893 6 C 0.417 3.583 7 O -0.578 6.578 8 N -0.562 5.562 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.024 3.976 12 N -0.900 5.900 13 Si 0.928 3.072 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.248 3.752 18 C -0.204 4.204 19 C -0.066 4.066 20 C -0.102 4.102 21 Cl -0.095 7.095 22 C -0.060 4.060 23 C -0.183 4.183 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 5.266 2.288 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.049 3.951 3 C -0.238 4.238 4 N -0.297 5.297 5 C -0.020 4.020 6 C 0.201 3.799 7 O -0.462 6.462 8 N -0.199 5.199 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.178 4.178 12 N -0.542 5.542 13 Si 0.755 3.245 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.207 1.207 17 C 0.144 3.856 18 C -0.226 4.226 19 C -0.086 4.086 20 C -0.130 4.130 21 Cl -0.067 7.067 22 C -0.079 4.079 23 C -0.206 4.206 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.629 5.867 2.240 15.920 hybrid contribution 1.006 -0.461 0.044 1.108 sum -13.623 5.406 2.284 14.833 Atomic orbital electron populations 1.22516 0.95745 1.02709 1.02631 1.20901 0.93041 0.93808 0.87330 1.22466 1.03376 0.95558 1.02382 1.46300 1.51610 1.29472 1.02341 1.21322 0.90088 0.87316 1.03316 1.20512 0.87075 0.87161 0.85120 1.90535 1.82923 1.17623 1.55079 1.41906 1.05854 1.08459 1.63662 1.19730 0.80972 0.95064 1.47040 0.87966 1.25250 1.00521 0.94810 0.97221 1.69612 1.34435 1.00017 1.50103 0.85824 0.81921 0.79002 0.77764 1.19256 1.20692 1.20726 1.17777 0.91139 0.91594 0.85123 1.21110 1.05368 0.98452 0.97642 1.20707 0.98488 0.98757 0.90640 1.20505 1.07360 0.99896 0.85278 1.98314 1.92766 1.88501 1.27121 1.20708 0.95537 0.94217 0.97479 1.20668 1.05934 1.03262 0.90698 0.90988 0.91800 0.92284 0.89750 0.90776 0.92537 0.90950 0.89135 0.89194 0.77506 0.91873 0.83586 0.85687 0.85528 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.98 37.16 0.33 -1.50 16 2 C 0.15 2.03 3.28 -67.94 -0.22 1.81 16 3 C -0.18 -2.50 8.97 37.15 0.33 -2.16 16 4 N -0.59 -9.10 2.02 -165.54 -0.33 -9.44 16 5 C 0.11 1.75 5.63 -5.19 -0.03 1.72 16 6 C 0.42 9.26 7.85 -10.99 -0.09 9.17 16 7 O -0.58 -14.93 15.53 5.55 0.09 -14.85 16 8 N -0.56 -13.59 5.29 -10.96 -0.06 -13.65 16 9 C -0.30 -8.11 9.68 -14.94 -0.14 -8.25 16 10 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 11 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 12 N -0.90 -23.92 13.05 55.50 0.72 -23.20 16 13 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 17 C 0.25 3.87 6.14 -83.77 -0.51 3.35 16 18 C -0.20 -2.80 6.77 -39.38 -0.27 -3.07 16 19 C -0.07 -0.88 9.82 -39.58 -0.39 -1.26 16 20 C -0.10 -1.43 6.32 -39.48 -0.25 -1.68 16 21 Cl -0.10 -1.22 28.95 -51.86 -1.50 -2.72 16 22 C -0.06 -0.87 9.82 -39.58 -0.39 -1.26 16 23 C -0.18 -2.89 9.21 -39.38 -0.36 -3.25 16 24 H 0.07 0.74 4.80 -51.93 -0.25 0.49 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.12 7.79 -51.93 -0.40 0.71 16 28 H 0.07 1.29 7.66 -51.93 -0.40 0.90 16 29 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 30 H 0.07 1.01 4.65 -51.93 -0.24 0.77 16 31 H 0.09 1.33 6.16 -51.93 -0.32 1.01 16 32 H 0.09 1.26 7.92 -51.93 -0.41 0.85 16 33 H 0.39 9.02 7.90 -40.82 -0.32 8.69 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.15 1.76 3.39 -52.49 -0.18 1.59 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.04 6.12 -52.49 -0.32 1.72 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -30.07 326.08 -7.75 -37.82 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.47 Total: 11.22 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.08 Total: -5.86 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.33 Total: -46.29 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.07 -7.75 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.188 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds