Wall clock time and date at job start Tue Mar 31 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47266 * 2 1 4 4 N 1.46906 * 109.46958 * 119.99823 * 2 1 3 5 5 C 1.46902 * 110.99573 * 299.99941 * 4 2 1 6 6 C 1.50707 * 109.46656 * 179.97438 * 5 4 2 7 7 O 1.21294 * 120.00016 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99715 * 179.97438 * 6 5 4 9 9 C 1.37092 * 119.99635 * 180.02562 * 8 6 5 10 10 H 1.08003 * 120.00232 * 359.97438 * 9 8 6 11 11 C 1.38952 * 119.99714 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99808 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47386 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46827 * 120.00111 * 13 11 9 16 16 H 1.48504 * 109.47265 * 239.99442 * 13 11 9 17 17 C 1.50699 * 109.47163 * 239.99585 * 2 1 3 18 18 C 1.38244 * 119.98543 * 239.72934 * 17 2 1 19 19 C 1.38213 * 120.01179 * 179.72827 * 18 17 2 20 20 C 1.38360 * 119.98663 * 0.54306 * 19 18 17 21 21 Cl 1.73599 * 120.01337 * 179.70634 * 20 19 18 22 22 C 1.38351 * 119.97080 * 359.73123 * 20 19 18 23 23 C 1.38215 * 119.98641 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47598 * 300.00446 * 1 2 3 25 25 H 1.09002 * 109.46781 * 60.00248 * 1 2 3 26 26 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47331 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47018 * 299.99607 * 3 2 1 29 29 H 1.08999 * 109.47836 * 59.99633 * 3 2 1 30 30 H 1.00896 * 111.00309 * 176.04353 * 4 2 1 31 31 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 32 32 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 33 33 H 0.96993 * 119.99587 * 0.02562 * 8 6 5 34 34 H 0.96997 * 119.99955 * 180.02562 * 12 11 9 35 35 H 1.08003 * 119.99693 * 0.02562 * 18 17 2 36 36 H 1.08001 * 120.00912 * 180.27158 * 19 18 17 37 37 H 1.07995 * 120.00664 * 179.97438 * 22 20 19 38 38 H 1.08002 * 119.98853 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5485 -0.0262 2.4211 6 6 2.0691 -0.7636 3.6280 7 8 2.7645 -1.7470 3.4845 8 7 1.7628 -0.3296 4.8667 9 6 2.2368 -1.0000 5.9646 10 1 2.8553 -1.8761 5.8369 11 6 1.9205 -0.5529 7.2416 12 7 1.1675 0.5128 7.3970 13 14 2.5658 -1.4669 8.7376 14 1 3.3844 -2.6243 8.2955 15 1 3.4034 -0.5515 9.5535 16 1 1.4229 -1.9508 9.5530 17 6 2.0323 -0.7105 -1.2304 18 6 2.8317 -1.8312 -1.1031 19 6 3.2881 -2.4865 -2.2312 20 6 2.9540 -2.0142 -3.4880 21 17 3.5332 -2.8323 -4.9054 22 6 2.1587 -0.8892 -3.6147 23 6 1.6979 -0.2383 -2.4858 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.0261 -0.7626 1.1911 31 1 1.9120 1.0011 2.4379 32 1 0.4586 -0.0264 2.4379 33 1 1.2070 0.4570 4.9813 34 1 0.9471 0.8251 8.2885 35 1 3.0957 -2.1975 -0.1220 36 1 3.9090 -3.3646 -2.1317 37 1 1.8979 -0.5198 -4.5954 38 1 1.0773 0.6401 -2.5847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066498262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:11 Heat of formation + Delta-G solvation = -18.585634 kcal Electronic energy + Delta-G solvation = -21015.139349 eV Core-core repulsion = 17690.171562 eV Total energy + Delta-G solvation = -3324.967787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09686 -38.36638 -37.18377 -36.21591 -33.94897 -31.93166 -31.26475 -30.98628 -29.33851 -27.39207 -26.65480 -24.38861 -22.79845 -22.59149 -19.61045 -19.13459 -17.98618 -17.46146 -16.38220 -15.63252 -15.31648 -15.02159 -14.62172 -14.31569 -14.05109 -14.03643 -13.76764 -13.63147 -13.32773 -12.92308 -12.65222 -12.55023 -12.02513 -11.96237 -11.69883 -11.58142 -11.46796 -11.28978 -11.16518 -11.01897 -10.86748 -10.69385 -10.35140 -10.23355 -9.52969 -9.13034 -8.69929 -8.47778 -8.08490 -7.97033 -6.42907 -3.83588 1.02910 1.20640 1.99454 3.15617 3.26370 3.33565 3.52170 3.89407 4.01744 4.25787 4.52904 4.70381 4.78136 4.98064 5.01181 5.17182 5.24182 5.24939 5.35067 5.50306 5.57765 5.62069 5.69446 5.78240 5.79383 5.88294 5.97937 6.03852 6.13542 6.22295 6.24731 6.29484 6.47163 6.71780 7.20928 7.54479 7.58810 8.05474 8.60014 9.16984 9.53283 10.04476 10.74930 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.002809 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.631461 B = 9966.022138 C =10678.561825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.147 3.853 3 C -0.181 4.181 4 N -0.656 5.656 5 C 0.045 3.955 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C -0.060 4.060 18 C -0.088 4.088 19 C -0.110 4.110 20 C -0.041 4.041 21 Cl -0.081 7.081 22 C -0.114 4.114 23 C -0.104 4.104 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.350 0.650 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 2.042 -20.385 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.055 3.945 3 C -0.240 4.240 4 N -0.289 5.289 5 C -0.087 4.087 6 C 0.227 3.773 7 O -0.468 6.468 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.061 4.061 18 C -0.107 4.107 19 C -0.129 4.129 20 C -0.067 4.067 21 Cl -0.052 7.052 22 C -0.133 4.133 23 C -0.122 4.122 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.171 0.829 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.459 0.919 -20.411 20.437 hybrid contribution 0.505 0.851 0.753 1.244 sum 0.045 1.770 -19.658 19.738 Atomic orbital electron populations 1.21910 0.92763 1.03011 1.01805 1.19789 0.95713 0.90747 0.88208 1.22600 1.01663 0.96999 1.02711 1.60349 1.17343 1.51877 0.99355 1.21780 1.01289 0.95842 0.89783 1.19814 0.85968 0.87482 0.84056 1.90519 1.42074 1.28362 1.85848 1.41863 1.46145 1.27765 1.04295 1.19748 1.29025 1.10585 0.83402 0.87871 1.25263 0.96974 0.96609 0.99139 1.69618 1.37177 1.23589 1.23965 0.85807 0.78527 0.79335 0.80721 1.19204 1.20785 1.20739 1.19884 0.96652 0.95592 0.93940 1.21278 0.95793 0.94304 0.99277 1.21128 1.00647 1.00646 0.90472 1.20947 1.01437 0.96479 0.87851 1.98358 1.87888 1.78804 1.40183 1.20935 0.98149 0.94787 0.99434 1.20887 1.00168 1.00021 0.91168 0.91752 0.92316 0.91442 0.92362 0.91963 0.91436 0.82924 0.93383 0.89213 0.77489 0.91929 0.83296 0.85007 0.85262 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.05 37.16 0.30 -1.22 16 2 C 0.15 1.74 0.79 -132.75 -0.11 1.64 16 3 C -0.18 -1.90 8.04 37.15 0.30 -1.60 16 4 N -0.66 -9.99 4.73 -102.39 -0.48 -10.47 16 5 C 0.05 0.76 5.38 -4.97 -0.03 0.74 16 6 C 0.44 10.16 7.82 -10.98 -0.09 10.07 16 7 O -0.58 -15.47 15.78 5.55 0.09 -15.38 16 8 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 9 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 10 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 13 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.06 -0.69 4.77 -104.62 -0.50 -1.19 16 18 C -0.09 -1.09 9.14 -39.59 -0.36 -1.45 16 19 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 20 C -0.04 -0.44 6.32 -39.49 -0.25 -0.69 16 21 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 22 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 23 C -0.10 -1.02 8.71 -39.59 -0.34 -1.37 16 24 H 0.06 0.71 6.40 -51.93 -0.33 0.38 16 25 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.54 7.39 -51.93 -0.38 0.16 16 29 H 0.07 0.73 6.40 -51.93 -0.33 0.39 16 30 H 0.35 5.55 7.24 -39.29 -0.28 5.27 16 31 H 0.05 0.73 6.30 -51.93 -0.33 0.40 16 32 H 0.09 1.41 6.30 -51.93 -0.33 1.08 16 33 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.15 2.01 6.40 -52.48 -0.34 1.67 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.01 7.10 -52.49 -0.37 0.63 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -30.07 329.24 -7.99 -38.07 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -4.60 Total: 13.13 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.09 Total: -6.12 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.18 Total: -48.24 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.09 Total: -15.38 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.07 -7.99 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066498262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.480 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds