Wall clock time and date at job start Tue Mar 31 2020 08:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46829 * 2 1 4 4 C 1.36935 * 120.00384 * 274.32728 * 3 2 1 5 5 H 1.07994 * 119.99988 * 318.93914 * 4 3 2 6 6 C 1.38814 * 120.00059 * 138.93098 * 4 3 2 7 7 N 1.31621 * 119.99779 * 160.31109 * 6 4 3 8 8 Si 1.86800 * 119.99984 * 340.31064 * 6 4 3 9 9 H 1.48500 * 109.47199 * 95.31543 * 8 6 4 10 10 H 1.48503 * 109.47119 * 215.31282 * 8 6 4 11 11 H 1.48497 * 109.47122 * 335.31546 * 8 6 4 12 12 C 1.46501 * 119.99981 * 94.33184 * 3 2 1 13 13 C 1.50704 * 109.47543 * 89.99883 * 12 3 2 14 14 O 1.21281 * 119.99443 * 359.97438 * 13 12 3 15 15 N 1.34773 * 120.00170 * 180.02562 * 13 12 3 16 16 C 1.39920 * 119.99551 * 184.68993 * 15 13 12 17 17 C 1.38893 * 120.06772 * 22.52520 * 16 15 13 18 18 C 1.38103 * 119.95917 * 179.97438 * 17 16 15 19 19 C 1.38288 * 120.08050 * 359.74109 * 18 17 16 20 20 C 1.38385 * 120.12547 * 0.51074 * 19 18 17 21 21 Cl 1.73596 * 119.97669 * 179.76240 * 20 19 18 22 22 C 1.38254 * 120.04207 * 359.48974 * 20 19 18 23 23 C 1.50694 * 120.03778 * 180.22825 * 22 20 19 24 24 H 1.09005 * 109.47192 * 299.99644 * 1 2 3 25 25 H 1.08995 * 109.47415 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47219 * 240.00371 * 2 1 3 28 28 H 1.09003 * 109.47465 * 119.99769 * 2 1 3 29 29 H 0.97000 * 119.99328 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47188 * 329.99831 * 12 3 2 31 31 H 1.09002 * 109.47272 * 209.99899 * 12 3 2 32 32 H 0.96993 * 119.99887 * 4.68375 * 15 13 12 33 33 H 1.08001 * 120.02179 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.95886 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.93759 * 180.28091 * 19 18 17 36 36 H 1.09010 * 109.47276 * 89.99973 * 23 22 20 37 37 H 1.09002 * 109.47357 * 210.00349 * 23 22 20 38 38 H 1.09001 * 109.47596 * 330.00043 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1621 2.0567 -1.1825 5 1 2.5677 1.5520 -2.0467 6 6 1.7863 3.3901 -1.2703 7 7 2.2601 4.1449 -2.2389 8 14 0.6083 4.1132 -0.0138 9 1 1.3823 4.7771 1.0658 10 1 -0.2717 5.1093 -0.6762 11 1 -0.2222 3.0283 0.5678 12 6 2.3527 2.0399 1.2651 13 6 3.8032 1.7936 1.5917 14 8 4.4897 1.1325 0.8417 15 7 4.3370 2.3071 2.7176 16 6 5.7052 2.1622 2.9723 17 6 6.5874 1.9313 1.9247 18 6 7.9375 1.7891 2.1785 19 6 8.4127 1.8817 3.4739 20 6 7.5361 2.1065 4.5209 21 17 8.1361 2.2160 6.1462 22 6 6.1836 2.2497 4.2726 23 6 5.2298 2.4996 5.4122 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.9978 5.0767 -2.3000 30 1 1.7274 1.6362 2.0614 31 1 2.1778 3.1120 1.1740 32 1 3.7728 2.7772 3.3513 33 1 6.2179 1.8629 0.9122 34 1 8.6234 1.6091 1.3640 35 1 9.4694 1.7747 3.6693 36 1 5.1281 3.5731 5.5722 37 1 4.2557 2.0743 5.1707 38 1 5.6156 2.0323 6.3182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068959282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:19 Heat of formation + Delta-G solvation = 11.749515 kcal Electronic energy + Delta-G solvation = -21745.774462 eV Core-core repulsion = 18422.122107 eV Total energy + Delta-G solvation = -3323.652356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41646 -38.49337 -36.55864 -35.83443 -34.50257 -32.43810 -31.98491 -30.50124 -29.37472 -27.24410 -26.47957 -23.95969 -22.93632 -21.51814 -20.62075 -19.88309 -17.97278 -17.04079 -16.60885 -15.78165 -15.51913 -15.25449 -14.72180 -14.40976 -14.13822 -13.90684 -13.55396 -13.35715 -13.23858 -12.76750 -12.58358 -12.50220 -12.17542 -11.91950 -11.75253 -11.56077 -11.47813 -11.39594 -10.96489 -10.83640 -10.67208 -10.32629 -10.17298 -10.06907 -9.71641 -9.21949 -8.63872 -8.57550 -7.87688 -6.94222 -6.08472 -3.55649 1.24577 1.29544 2.06100 3.09096 3.13149 3.33848 3.36338 3.39378 3.80644 4.38036 4.72034 4.84930 4.87269 5.04604 5.18172 5.30487 5.41593 5.47825 5.52883 5.64934 5.75651 5.79564 5.88874 5.98902 6.00217 6.21024 6.22569 6.28318 6.38506 6.45603 6.46875 6.62616 6.78778 7.02534 7.10488 7.65577 7.95722 8.34857 8.61477 8.87195 9.57598 9.96796 11.06615 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.004039 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.043669 B = 6930.461341 C = 6965.463029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 N -0.577 5.577 4 C -0.263 4.263 5 H 0.081 0.919 6 C 0.037 3.963 7 N -0.894 5.894 8 Si 0.869 3.131 9 H -0.286 1.286 10 H -0.296 1.296 11 H -0.261 1.261 12 C 0.119 3.881 13 C 0.484 3.516 14 O -0.492 6.492 15 N -0.682 5.682 16 C 0.177 3.823 17 C -0.129 4.129 18 C -0.090 4.090 19 C -0.140 4.140 20 C -0.016 4.016 21 Cl -0.077 7.077 22 C -0.125 4.125 23 C -0.116 4.116 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.406 0.594 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -3.297 15.739 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 N -0.297 5.297 4 C -0.392 4.392 5 H 0.098 0.902 6 C -0.164 4.164 7 N -0.534 5.534 8 Si 0.698 3.302 9 H -0.214 1.214 10 H -0.224 1.224 11 H -0.185 1.185 12 C -0.012 4.012 13 C 0.270 3.730 14 O -0.364 6.364 15 N -0.328 5.328 16 C 0.080 3.920 17 C -0.150 4.150 18 C -0.109 4.109 19 C -0.159 4.159 20 C -0.043 4.043 21 Cl -0.048 7.048 22 C -0.129 4.129 23 C -0.173 4.173 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.242 0.758 33 H 0.178 0.822 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.629 -3.640 15.107 16.895 hybrid contribution -0.697 0.958 1.147 1.649 sum 5.932 -2.683 16.254 17.509 Atomic orbital electron populations 1.22306 0.99132 0.99418 1.01840 1.20867 0.91731 0.85503 0.99488 1.43795 1.72502 1.11730 1.01699 1.18780 1.37031 0.94290 0.89072 0.90197 1.25572 0.97581 0.96847 0.96438 1.69855 1.43019 1.06649 1.33902 0.87036 0.82986 0.78913 0.81268 1.21432 1.22355 1.18528 1.21453 0.88781 0.99791 0.91165 1.23494 0.93084 0.77620 0.78810 1.90553 1.61949 1.36533 1.47336 1.44292 1.06461 1.57250 1.24770 1.17659 0.84517 0.97944 0.91885 1.21833 0.92281 0.99871 1.00988 1.21031 0.95344 0.98630 0.95923 1.20917 0.99362 1.03892 0.91767 1.20408 0.92742 1.05685 0.85437 1.98333 1.87921 1.96749 1.21831 1.19329 0.93192 1.06582 0.93749 1.20759 0.97945 1.02372 0.96195 0.93994 0.92205 0.94015 0.92831 0.94315 0.92549 0.90835 0.89788 0.75820 0.82201 0.84978 0.85365 0.90858 0.91428 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.22 37.16 0.38 -2.57 16 2 C 0.15 2.94 6.39 -4.04 -0.03 2.91 16 3 N -0.58 -13.25 1.51 -174.61 -0.26 -13.52 16 4 C -0.26 -7.18 9.90 -15.06 -0.15 -7.33 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.04 1.02 5.33 -17.43 -0.09 0.93 16 7 N -0.89 -26.65 13.97 55.49 0.78 -25.87 16 8 Si 0.87 20.45 25.03 -169.99 -4.25 16.20 16 9 H -0.29 -6.37 6.71 56.52 0.38 -5.99 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 12 C 0.12 2.37 4.94 -5.19 -0.03 2.35 16 13 C 0.48 9.44 7.73 -10.99 -0.08 9.35 16 14 O -0.49 -11.23 13.44 5.56 0.07 -11.16 16 15 N -0.68 -10.66 5.02 -9.87 -0.05 -10.71 16 16 C 0.18 2.78 6.45 -83.70 -0.54 2.24 16 17 C -0.13 -2.16 8.75 -39.39 -0.34 -2.50 16 18 C -0.09 -1.24 10.04 -39.61 -0.40 -1.64 16 19 C -0.14 -1.74 9.83 -39.51 -0.39 -2.13 16 20 C -0.02 -0.20 6.31 -39.52 -0.25 -0.45 16 21 Cl -0.08 -0.85 27.29 -51.86 -1.42 -2.27 16 22 C -0.12 -1.66 5.90 -104.40 -0.62 -2.28 16 23 C -0.12 -1.21 9.05 36.00 0.33 -0.88 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 28 H 0.04 0.69 8.04 -51.93 -0.42 0.27 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.08 1.78 3.54 -51.93 -0.18 1.60 16 32 H 0.41 5.01 7.31 -40.82 -0.30 4.71 16 33 H 0.16 3.14 5.59 -52.49 -0.29 2.85 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 0.64 6.94 -51.93 -0.36 0.28 16 38 H 0.07 0.74 6.90 -51.93 -0.36 0.38 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -31.25 327.55 -7.27 -38.52 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.87 Total: 5.88 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.21 Total: -2.00 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.46 Total: -50.10 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.25 Total: 16.20 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.42 Total: -2.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.25 -7.27 -38.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.268 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds