Wall clock time and date at job start Tue Mar 31 2020 08:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46888 * 2 1 4 4 C 1.50703 * 109.47051 * 119.99176 * 2 1 3 5 5 O 1.21279 * 120.00200 * 120.00146 * 4 2 1 6 6 N 1.34774 * 119.99925 * 300.00369 * 4 2 1 7 7 C 1.46506 * 119.99977 * 179.97438 * 6 4 2 8 8 C 1.50697 * 109.46988 * 180.02562 * 7 6 4 9 9 C 1.38234 * 120.00493 * 105.00430 * 8 7 6 10 10 C 1.38228 * 120.01433 * 179.97438 * 9 8 7 11 11 C 1.38262 * 120.02341 * 0.04041 * 10 9 8 12 12 C 1.38193 * 120.01652 * 359.97438 * 11 10 9 13 13 C 1.38331 * 120.00858 * 284.72797 * 8 7 6 14 14 Cl 1.73600 * 120.01386 * 359.97438 * 13 8 7 15 15 N 1.46492 * 109.47477 * 239.99396 * 2 1 3 16 16 C 1.46493 * 120.00190 * 299.99772 * 15 2 1 17 17 C 1.36942 * 119.99843 * 120.00256 * 15 2 1 18 18 H 1.07996 * 120.00185 * 22.69010 * 17 15 2 19 19 C 1.38813 * 119.99560 * 202.69501 * 17 15 2 20 20 N 1.31615 * 120.00391 * 14.12563 * 19 17 15 21 21 Si 1.86802 * 119.99736 * 194.12324 * 19 17 15 22 22 H 1.48497 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47192 * 120.00076 * 21 19 17 24 24 H 1.48501 * 109.47184 * 240.00104 * 21 19 17 25 25 H 1.08997 * 109.47031 * 60.01165 * 1 2 3 26 26 H 1.08995 * 109.47741 * 300.00495 * 1 2 3 27 27 H 1.09009 * 109.46888 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00378 * 0.02562 * 6 4 2 29 29 H 1.08995 * 109.46988 * 300.00349 * 7 6 4 30 30 H 1.08994 * 109.46751 * 60.00470 * 7 6 4 31 31 H 1.07994 * 119.99548 * 359.97438 * 9 8 7 32 32 H 1.07997 * 119.98690 * 180.02562 * 10 9 8 33 33 H 1.07999 * 119.98905 * 179.97438 * 11 10 9 34 34 H 1.07997 * 120.00539 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.47315 * 95.26336 * 16 15 2 36 36 H 1.08998 * 109.47567 * 215.25901 * 16 15 2 37 37 H 1.08998 * 109.47233 * 335.26086 * 16 15 2 38 38 H 0.97006 * 120.00215 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7102 1.2306 5 8 2.7296 -1.6963 1.1195 6 7 1.7066 -0.2496 2.4546 7 6 2.1945 -0.9404 3.6509 8 6 1.6916 -0.2302 4.8812 9 6 0.6629 -0.7786 5.6241 10 6 0.2019 -0.1275 6.7529 11 6 0.7688 1.0729 7.1392 12 6 1.7970 1.6223 6.3972 13 6 2.2632 0.9678 5.2706 14 17 3.5605 1.6532 4.3427 15 7 2.0184 -0.6907 -1.1960 16 6 1.6646 -2.0932 -1.4277 17 6 2.8057 -0.0252 -2.0974 18 1 3.3650 0.8449 -1.7869 19 6 2.8849 -0.4691 -3.4103 20 7 2.0097 -1.3411 -3.8641 21 14 4.2335 0.1714 -4.5330 22 1 5.0826 1.1347 -3.7872 23 1 5.0682 -0.9639 -5.0016 24 1 3.6221 0.8521 -5.7027 25 1 -0.3633 0.5136 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.1486 0.5388 2.5435 29 1 1.8308 -1.9679 3.6508 30 1 3.2844 -0.9407 3.6511 31 1 0.2193 -1.7159 5.3225 32 1 -0.6016 -0.5566 7.3332 33 1 0.4078 1.5813 8.0210 34 1 2.2400 2.5598 6.6994 35 1 0.7907 -2.1451 -2.0772 36 1 2.5012 -2.6053 -1.9030 37 1 1.4385 -2.5730 -0.4755 38 1 2.0648 -1.6510 -4.7816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:05 Heat of formation + Delta-G solvation = -13.935287 kcal Electronic energy + Delta-G solvation = -21419.267776 eV Core-core repulsion = 18094.501644 eV Total energy + Delta-G solvation = -3324.766132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01630 -40.14208 -37.40020 -37.35728 -35.88118 -34.05237 -32.48988 -31.65734 -30.79098 -28.04478 -27.28279 -25.66077 -23.67596 -23.44572 -22.31992 -20.89159 -18.93219 -18.32034 -17.56263 -17.27340 -16.90004 -16.53993 -16.08738 -15.95113 -15.43103 -14.99572 -14.78055 -14.64318 -14.39988 -14.22625 -13.85035 -13.68374 -13.17774 -13.10286 -12.83178 -12.68029 -12.56445 -12.48584 -12.39157 -12.27392 -12.20155 -12.00992 -11.85524 -11.68807 -10.87978 -10.56247 -10.04657 -9.90366 -9.68134 -8.80501 -7.83520 -5.32350 0.09967 0.26960 1.18461 1.44177 1.47093 1.57084 1.82185 2.25285 2.51852 2.78447 3.31007 3.54417 3.60676 3.77479 4.06516 4.09341 4.29828 4.36313 4.40315 4.44390 4.57863 4.61501 4.76977 4.82366 4.92584 4.96131 5.03232 5.27198 5.35849 5.38187 5.39712 5.47040 5.50968 5.60886 5.66880 5.85782 6.27903 6.64057 7.11406 7.41437 7.83026 8.27156 9.19783 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.003640 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.027014 B = 7689.757322 C = 8260.767038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.150 3.850 3 H 0.096 0.904 4 C 0.500 3.500 5 O -0.574 6.574 6 N -0.711 5.711 7 C 0.163 3.837 8 C -0.107 4.107 9 C -0.094 4.094 10 C -0.112 4.112 11 C -0.097 4.097 12 C -0.118 4.118 13 C -0.038 4.038 14 Cl -0.079 7.079 15 N -0.592 5.592 16 C 0.196 3.804 17 C -0.268 4.268 18 H 0.070 0.930 19 C -0.050 4.050 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.285 1.285 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.409 0.591 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.147 0.853 35 H 0.009 0.991 36 H 0.001 0.999 37 H 0.019 0.981 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 6.853 25.800 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.039 3.961 3 H 0.114 0.886 4 C 0.286 3.714 5 O -0.452 6.452 6 N -0.365 5.365 7 C 0.039 3.961 8 C -0.108 4.108 9 C -0.112 4.112 10 C -0.130 4.130 11 C -0.115 4.115 12 C -0.136 4.136 13 C -0.065 4.065 14 Cl -0.050 7.050 15 N -0.313 5.313 16 C 0.051 3.949 17 C -0.398 4.398 18 H 0.088 0.912 19 C -0.246 4.246 20 N -0.580 5.580 21 Si 0.798 3.202 22 H -0.192 1.192 23 H -0.221 1.221 24 H -0.211 1.211 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.245 0.755 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.165 0.835 35 H 0.027 0.973 36 H 0.020 0.980 37 H 0.037 0.963 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.653 6.122 25.454 26.784 hybrid contribution 0.894 0.287 -1.153 1.488 sum -4.759 6.410 24.301 25.578 Atomic orbital electron populations 1.22066 0.93514 1.01655 1.02670 1.20543 0.95363 0.95963 0.84276 0.88609 1.22295 0.79094 0.84411 0.85638 1.90618 1.39136 1.28283 1.87142 1.45991 1.53993 1.32403 1.04114 1.20049 0.98693 0.95709 0.81643 1.19698 0.98623 0.94901 0.97561 1.21327 0.94430 1.00612 0.94853 1.21632 1.00189 0.95141 0.96052 1.21569 0.94490 0.95578 0.99850 1.21339 0.97987 1.00937 0.93357 1.21100 0.93693 0.95726 0.95971 1.98408 1.48912 1.84347 1.73379 1.43795 1.58461 1.08305 1.20765 1.20302 0.96821 0.83604 0.94221 1.19573 1.19461 1.11074 0.89705 0.91191 1.25759 1.00527 1.00236 0.98028 1.70249 1.36159 1.36167 1.15417 0.85167 0.78936 0.77415 0.78672 1.19197 1.22137 1.21121 0.92653 0.89158 0.93895 0.75488 0.90913 0.92424 0.83776 0.82363 0.82003 0.83539 0.97293 0.98023 0.96275 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.09 71.98 0.65 -4.10 16 2 C 0.15 6.22 3.12 44.25 0.14 6.36 16 3 H 0.10 3.77 7.86 -2.38 -0.02 3.75 16 4 C 0.50 19.68 6.85 87.66 0.60 20.28 16 5 O -0.57 -28.08 14.61 -3.03 -0.04 -28.12 16 6 N -0.71 -20.24 5.35 -466.79 -2.50 -22.74 16 7 C 0.16 4.21 5.14 85.63 0.44 4.65 16 8 C -0.11 -2.08 5.25 -19.84 -0.10 -2.18 16 9 C -0.09 -1.35 9.67 22.27 0.22 -1.14 16 10 C -0.11 -1.13 10.05 22.27 0.22 -0.90 16 11 C -0.10 -0.93 10.05 22.26 0.22 -0.71 16 12 C -0.12 -1.63 9.83 22.29 0.22 -1.41 16 13 C -0.04 -0.72 6.31 22.33 0.14 -0.58 16 14 Cl -0.08 -1.84 27.56 -2.72 -0.07 -1.91 16 15 N -0.59 -31.84 2.58 -707.01 -1.83 -33.67 16 16 C 0.20 10.89 7.47 127.77 0.95 11.85 16 17 C -0.27 -15.54 9.58 84.03 0.81 -14.73 16 18 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.05 -2.94 5.08 84.86 0.43 -2.51 16 20 N -0.93 -57.49 10.75 21.65 0.23 -57.25 16 21 Si 0.97 47.04 29.58 68.60 2.03 49.07 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.09 2.18 7.56 -2.39 -0.02 2.16 16 27 H 0.04 1.54 7.67 -2.38 -0.02 1.52 16 28 H 0.41 9.47 7.88 -92.71 -0.73 8.74 16 29 H 0.07 1.91 7.95 -2.39 -0.02 1.89 16 30 H 0.06 1.74 7.57 -2.39 -0.02 1.72 16 31 H 0.14 1.74 8.00 -2.91 -0.02 1.72 16 32 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 33 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.01 0.52 7.34 -2.38 -0.02 0.50 16 36 H 0.00 0.06 7.36 -2.39 -0.02 0.04 16 37 H 0.02 0.99 6.44 -2.39 -0.02 0.97 16 38 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -75.26 333.34 3.10 -72.16 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.34 Total: 7.59 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 4.94 Total: 14.88 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.09 Total: -113.67 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.04 Total: -28.12 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -75.26 3.10 -72.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.221 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds