Wall clock time and date at job start Tue Mar 31 2020 08:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 N 1.46499 * 109.47192 * 240.00328 * 2 1 3 5 5 C 1.39744 * 120.00334 * 84.99504 * 4 2 1 6 6 C 1.38896 * 120.06306 * 179.97438 * 5 4 2 7 7 C 1.38107 * 119.93730 * 179.97438 * 6 5 4 8 8 C 1.38378 * 120.06058 * 0.28091 * 7 6 5 9 9 Cl 1.73602 * 119.93923 * 179.69773 * 8 7 6 10 10 C 1.38385 * 120.12543 * 359.44535 * 8 7 6 11 11 C 1.38112 * 120.05717 * 0.55252 * 10 8 7 12 12 C 1.50705 * 109.47338 * 120.00147 * 2 1 3 13 13 O 1.21276 * 119.99900 * 119.99569 * 12 2 1 14 14 N 1.34780 * 119.99709 * 300.00519 * 12 2 1 15 15 C 1.46495 * 119.99979 * 359.97438 * 14 12 2 16 16 C 1.46495 * 119.99580 * 180.02562 * 14 12 2 17 17 C 1.50701 * 109.47228 * 89.99514 * 16 14 12 18 18 H 1.07994 * 120.00217 * 359.97438 * 17 16 14 19 19 C 1.37885 * 119.99866 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00045 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46987 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46936 * 120.00270 * 21 19 17 24 24 H 1.48504 * 109.47022 * 239.99935 * 21 19 17 25 25 H 1.08994 * 109.47047 * 299.99591 * 1 2 3 26 26 H 1.08995 * 109.47078 * 59.99889 * 1 2 3 27 27 H 1.08996 * 109.46863 * 180.02562 * 1 2 3 28 28 H 0.97005 * 120.00071 * 264.99927 * 4 2 1 29 29 H 1.08000 * 120.03113 * 359.96096 * 6 5 4 30 30 H 1.08002 * 119.96597 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.96850 * 180.25020 * 10 8 7 32 32 H 1.07997 * 120.02593 * 179.70190 * 11 10 8 33 33 H 1.09005 * 109.47022 * 90.00842 * 15 14 12 34 34 H 1.08998 * 109.47268 * 210.00349 * 15 14 12 35 35 H 1.08997 * 109.47760 * 330.01024 * 15 14 12 36 36 H 1.08998 * 109.46779 * 209.99394 * 16 14 12 37 37 H 1.09004 * 109.47510 * 329.99507 * 16 14 12 38 38 H 0.97000 * 120.00399 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1518 0.0066 -2.4000 6 6 2.6152 -0.6468 -3.5347 7 6 2.7455 0.0446 -4.7232 8 6 2.4204 1.3883 -4.7827 9 17 2.5929 2.2562 -6.2763 10 6 1.9531 2.0404 -3.6551 11 6 1.8208 1.3540 -2.4640 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 0.8649 0.9413 2.5890 16 6 2.1956 -0.9403 3.6507 17 6 3.5230 -0.3562 4.0605 18 1 3.9590 0.4484 3.4872 19 6 4.1807 -0.8492 5.1676 20 7 3.6499 -1.8293 5.8656 21 14 5.8257 -0.1247 5.6761 22 1 6.2019 0.9591 4.7333 23 1 5.7190 0.4297 7.0496 24 1 6.8635 -1.1866 5.6501 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 2.2491 -1.6317 -1.1527 29 1 2.8735 -1.6943 -3.4877 30 1 3.1062 -0.4629 -5.6057 31 1 1.6964 3.0882 -3.7054 32 1 1.4607 1.8646 -1.5831 33 1 -0.1832 0.6437 2.6222 34 1 1.1227 1.4665 3.5086 35 1 1.0285 1.6001 1.7362 36 1 1.4777 -0.8151 4.4612 37 1 2.3171 -2.0016 3.4336 38 1 4.1124 -2.1759 6.6446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070816281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:12 Heat of formation + Delta-G solvation = -9.290074 kcal Electronic energy + Delta-G solvation = -21150.924191 eV Core-core repulsion = 17826.359490 eV Total energy + Delta-G solvation = -3324.564701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05775 -39.01412 -36.67008 -35.43163 -35.05081 -32.81337 -31.52923 -30.89126 -28.31562 -27.54535 -26.23885 -24.22611 -23.21029 -22.49910 -21.22734 -18.85541 -17.94547 -16.74860 -16.62068 -16.19118 -15.75272 -15.24065 -14.86422 -14.54908 -14.22114 -13.92306 -13.75035 -13.56368 -13.37999 -12.97397 -12.53128 -12.32574 -12.22831 -12.13283 -11.93350 -11.61919 -11.45470 -11.33679 -11.18805 -10.93965 -10.78703 -10.66833 -10.23618 -9.95136 -9.70184 -9.15145 -9.06978 -8.51087 -7.81005 -7.44294 -6.11971 -4.17134 1.23654 1.32789 2.19829 3.17934 3.19376 3.25346 3.33507 3.37936 3.65901 3.88362 4.38554 4.67709 4.76863 4.80222 5.02934 5.14105 5.20647 5.22897 5.28098 5.40324 5.50185 5.61203 5.65671 5.79153 5.83265 5.96861 6.05647 6.14855 6.18453 6.25572 6.54833 6.88665 7.20036 7.31861 7.40005 7.70204 7.83756 8.13557 8.23399 8.75873 8.91580 9.48383 10.96210 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.023527 B = 0.003064 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.815257 B = 9136.041754 C = 9557.247449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.127 3.873 3 H 0.100 0.900 4 N -0.719 5.719 5 C 0.235 3.765 6 C -0.187 4.187 7 C -0.059 4.059 8 C -0.102 4.102 9 Cl -0.089 7.089 10 C -0.058 4.058 11 C -0.194 4.194 12 C 0.502 3.498 13 O -0.537 6.537 14 N -0.595 5.595 15 C 0.078 3.922 16 C 0.245 3.755 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.411 0.589 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.044 0.956 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 7.482 -17.732 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.018 3.982 3 H 0.117 0.883 4 N -0.347 5.347 5 C 0.129 3.871 6 C -0.210 4.210 7 C -0.078 4.078 8 C -0.131 4.131 9 Cl -0.061 7.061 10 C -0.077 4.077 11 C -0.217 4.217 12 C 0.287 3.713 13 O -0.414 6.414 14 N -0.327 5.327 15 C -0.066 4.066 16 C 0.126 3.874 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.249 0.751 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.414 7.002 -17.524 20.275 hybrid contribution 1.050 0.164 0.358 1.122 sum -6.363 7.166 -17.166 19.660 Atomic orbital electron populations 1.22469 0.93767 1.03583 1.03526 1.20816 0.95060 0.97394 0.84967 0.88251 1.44600 1.71235 1.13182 1.05724 1.17919 0.91802 0.91352 0.86010 1.20542 1.08234 1.00690 0.91559 1.20717 0.97256 0.92043 0.97785 1.20547 1.11393 0.93303 0.87811 1.98332 1.96832 1.76970 1.33959 1.20744 0.96550 0.99705 0.90751 1.20635 1.09479 0.93078 0.98516 1.20221 0.81258 0.85340 0.84515 1.90670 1.37918 1.26848 1.85961 1.48092 1.49327 1.28145 1.07096 1.21861 0.93930 0.88025 1.02797 1.19347 0.94390 0.93717 0.79960 1.21445 1.04804 1.19189 1.11288 0.92391 1.24941 0.98014 0.94907 0.96217 1.69935 1.39005 1.26021 1.18317 0.86430 0.83609 0.79092 0.78235 1.19778 1.20885 1.20815 0.89868 0.91518 0.91783 0.75084 0.85235 0.85283 0.85290 0.85186 0.93026 0.90479 0.92256 0.94722 0.93765 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.06 37.16 0.34 -1.58 16 2 C 0.13 1.76 1.87 -69.08 -0.13 1.63 16 3 H 0.10 1.26 5.75 -51.93 -0.30 0.96 16 4 N -0.72 -9.79 5.13 -53.27 -0.27 -10.06 16 5 C 0.24 2.90 6.64 -83.76 -0.56 2.34 16 6 C -0.19 -2.12 9.90 -39.39 -0.39 -2.51 16 7 C -0.06 -0.62 9.82 -39.58 -0.39 -1.01 16 8 C -0.10 -1.12 6.32 -39.48 -0.25 -1.37 16 9 Cl -0.09 -0.92 28.95 -51.86 -1.50 -2.42 16 10 C -0.06 -0.61 9.82 -39.57 -0.39 -1.00 16 11 C -0.19 -2.17 8.85 -39.39 -0.35 -2.52 16 12 C 0.50 9.72 7.14 -10.98 -0.08 9.64 16 13 O -0.54 -12.73 15.42 5.56 0.09 -12.64 16 14 N -0.59 -11.77 2.86 -182.96 -0.52 -12.29 16 15 C 0.08 1.10 8.80 59.84 0.53 1.63 16 16 C 0.24 6.17 5.16 -5.20 -0.03 6.14 16 17 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.08 0.82 4.53 -51.93 -0.24 0.58 16 26 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.41 5.95 7.80 -40.82 -0.32 5.64 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.28 6.11 -52.49 -0.32 0.96 16 33 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 34 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.06 0.66 6.01 -51.93 -0.31 0.35 16 36 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -31.76 331.58 -8.32 -40.08 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.71 Total: 3.10 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.11 Total: -1.95 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.06 Total: -47.72 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.76 -8.32 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070816281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.792 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds