Wall clock time and date at job start Tue Mar 31 2020 08:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46707 * 2 1 4 4 C 1.50703 * 109.47099 * 119.99389 * 2 1 3 5 5 C 1.38230 * 120.00564 * 93.70520 * 4 2 1 6 6 C 1.38226 * 120.01563 * 179.74598 * 5 4 2 7 7 C 1.38269 * 120.02251 * 0.55465 * 6 5 4 8 8 C 1.38198 * 120.01041 * 359.69747 * 7 6 5 9 9 C 1.38332 * 120.00823 * 273.98291 * 4 2 1 10 10 Cl 1.73601 * 120.01109 * 359.97438 * 9 4 2 11 11 N 1.46895 * 109.47678 * 239.99685 * 2 1 3 12 12 C 1.46909 * 110.99940 * 51.31631 * 11 2 1 13 13 C 1.46890 * 111.00309 * 175.27291 * 11 2 1 14 14 C 1.50702 * 109.47310 * 170.00164 * 13 11 2 15 15 O 1.21293 * 119.99699 * 359.97438 * 14 13 11 16 16 N 1.34774 * 120.00387 * 180.02562 * 14 13 11 17 17 C 1.37094 * 120.00285 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99931 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00292 * 179.97438 * 17 16 14 20 20 N 1.31410 * 120.00553 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99581 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47283 * 89.99969 * 21 19 17 23 23 H 1.48503 * 109.46996 * 209.99363 * 21 19 17 24 24 H 1.48497 * 109.47158 * 329.99450 * 21 19 17 25 25 H 1.08999 * 109.47058 * 60.00584 * 1 2 3 26 26 H 1.09009 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47543 * 299.99792 * 1 2 3 28 28 H 1.08006 * 119.99570 * 0.02562 * 5 4 2 29 29 H 1.08000 * 119.99096 * 180.25256 * 6 5 4 30 30 H 1.07993 * 119.99264 * 179.72104 * 7 6 5 31 31 H 1.07998 * 120.00255 * 180.02562 * 8 7 6 32 32 H 1.08991 * 109.46783 * 177.52471 * 12 11 2 33 33 H 1.09002 * 109.46694 * 57.52329 * 12 11 2 34 34 H 1.09003 * 109.46846 * 297.52378 * 12 11 2 35 35 H 1.08997 * 109.47565 * 289.99960 * 13 11 2 36 36 H 1.08997 * 109.47174 * 50.00338 * 13 11 2 37 37 H 0.97006 * 119.99519 * 359.97438 * 16 14 13 38 38 H 0.96996 * 120.00102 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.3357 -2.0578 1.1755 6 6 2.8014 -2.7083 2.3027 7 6 2.9533 -2.0142 3.4889 8 6 2.6454 -0.6682 3.5464 9 6 2.1845 -0.0153 2.4169 10 17 1.7975 1.6755 2.4884 11 7 2.0198 -0.6925 -1.1993 12 6 1.3871 -0.1565 -2.4120 13 6 3.4838 -0.6150 -1.2910 14 6 3.9680 -1.5329 -2.3838 15 8 3.1717 -2.1877 -3.0229 16 7 5.2858 -1.6271 -2.6502 17 6 5.7263 -2.4626 -3.6439 18 1 5.0172 -3.0450 -4.2135 19 6 7.0849 -2.5593 -3.9189 20 7 7.5071 -3.3597 -4.8717 21 14 8.3111 -1.5514 -2.9341 22 1 8.7494 -2.3276 -1.7464 23 1 9.4889 -1.2378 -3.7825 24 1 7.6701 -0.2875 -2.4904 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.2131 -2.6015 0.2504 29 1 3.0422 -3.7602 2.2582 30 1 3.3129 -2.5239 4.3704 31 1 2.7644 -0.1261 4.4729 32 1 1.7997 -0.6563 -3.2883 33 1 1.5805 0.9141 -2.4797 34 1 0.3118 -0.3295 -2.3676 35 1 3.7799 0.4089 -1.5190 36 1 3.9239 -0.9175 -0.3409 37 1 5.9226 -1.1037 -2.1387 38 1 8.4555 -3.4274 -5.0634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076669107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:31 Heat of formation + Delta-G solvation = -0.780480 kcal Electronic energy + Delta-G solvation = -21794.372957 eV Core-core repulsion = 18470.177260 eV Total energy + Delta-G solvation = -3324.195697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99791 -38.54304 -36.81554 -36.53118 -33.96932 -32.14604 -31.66447 -30.80556 -29.76222 -27.47970 -25.65579 -23.91774 -22.98760 -22.28712 -20.05056 -19.32984 -18.24453 -17.25528 -16.39057 -15.89659 -15.39644 -15.02769 -14.81656 -14.54065 -14.28567 -13.79136 -13.70500 -13.55117 -13.08615 -12.90358 -12.47443 -12.41288 -12.20167 -11.84901 -11.76039 -11.62693 -11.50976 -11.40520 -11.29165 -11.07732 -10.93847 -10.59705 -10.55509 -9.97128 -9.52917 -8.89938 -8.74268 -8.55308 -8.17185 -7.96219 -6.30685 -3.81772 1.07649 1.23112 2.02921 3.03455 3.07668 3.15606 3.57153 3.74660 3.87734 4.10952 4.49139 4.77280 4.85580 4.97953 5.16200 5.19460 5.23506 5.25228 5.40851 5.48187 5.61736 5.65605 5.71257 5.84076 5.85607 5.89619 5.95627 5.98373 6.14309 6.17038 6.37723 6.44302 6.53649 6.79206 7.17016 7.31863 7.59225 8.15305 8.61001 8.95931 9.43457 9.84471 10.82436 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.004507 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.215299 B = 6211.155676 C = 6782.770936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.115 3.885 3 H 0.055 0.945 4 C -0.069 4.069 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.035 4.035 10 Cl -0.076 7.076 11 N -0.511 5.511 12 C 0.020 3.980 13 C 0.038 3.962 14 C 0.455 3.545 15 O -0.559 6.559 16 N -0.591 5.591 17 C -0.303 4.303 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.882 5.882 21 Si 0.877 3.123 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.015 0.985 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.370 0.630 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 8.511 17.162 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.007 3.993 3 H 0.073 0.927 4 C -0.070 4.070 5 C -0.097 4.097 6 C -0.135 4.135 7 C -0.131 4.131 8 C -0.136 4.136 9 C -0.062 4.062 10 Cl -0.047 7.047 11 N -0.235 5.235 12 C -0.127 4.127 13 C -0.093 4.093 14 C 0.241 3.759 15 O -0.441 6.441 16 N -0.231 5.231 17 C -0.432 4.432 18 H 0.138 0.862 19 C -0.160 4.160 20 N -0.522 5.522 21 Si 0.703 3.297 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.195 1.195 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.168 0.832 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.115 0.885 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.202 0.798 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.532 7.634 16.625 21.109 hybrid contribution 1.502 1.783 0.744 2.447 sum -9.029 9.417 17.369 21.723 Atomic orbital electron populations 1.21864 0.92938 1.03013 1.01978 1.20592 0.95961 0.94952 0.87809 0.92727 1.19701 0.99573 0.94421 0.93289 1.21342 0.95764 0.93157 0.99485 1.21382 0.98826 1.00617 0.92714 1.21112 0.99999 0.93567 0.98416 1.20941 1.00483 0.94971 0.97172 1.20789 1.04727 0.85131 0.95512 1.98349 1.92830 1.15086 1.98478 1.61599 1.04536 1.55474 1.01894 1.22592 0.99843 0.96527 0.93779 1.21959 0.88957 0.98474 0.99928 1.19591 0.82783 0.86680 0.86878 1.90526 1.53709 1.47339 1.52493 1.42220 1.05964 1.40889 1.33999 1.19418 0.93221 1.19592 1.10957 0.86236 1.25017 0.96915 0.97276 0.96840 1.69616 1.15702 1.36879 1.29981 0.86712 0.81946 0.80385 0.80620 1.19584 1.20178 1.19534 0.91679 0.91410 0.92140 0.83201 0.85314 0.85409 0.85294 0.88474 0.96632 0.91405 0.93416 0.89314 0.79765 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.64 37.16 0.32 -1.27 16 2 C 0.12 1.51 1.82 -68.87 -0.13 1.39 16 3 H 0.06 0.72 7.07 -51.93 -0.37 0.35 16 4 C -0.07 -0.89 4.15 -104.59 -0.43 -1.32 16 5 C -0.08 -1.06 8.06 -39.59 -0.32 -1.38 16 6 C -0.12 -1.34 10.05 -39.57 -0.40 -1.73 16 7 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 8 C -0.12 -1.22 9.83 -39.55 -0.39 -1.61 16 9 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 10 Cl -0.08 -0.83 27.28 -51.86 -1.41 -2.25 16 11 N -0.51 -8.07 3.32 -237.73 -0.79 -8.86 16 12 C 0.02 0.31 8.52 60.07 0.51 0.82 16 13 C 0.04 0.66 4.99 -4.98 -0.02 0.64 16 14 C 0.46 10.22 7.45 -10.99 -0.08 10.13 16 15 O -0.56 -14.49 13.93 5.55 0.08 -14.41 16 16 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 17 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 18 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 19 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 20 N -0.88 -25.69 13.96 55.50 0.77 -24.91 16 21 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 25 H 0.06 0.69 6.37 -51.93 -0.33 0.36 16 26 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.06 0.62 8.04 -51.93 -0.42 0.21 16 28 H 0.15 2.29 7.24 -52.48 -0.38 1.91 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.10 1.84 5.80 -51.93 -0.30 1.53 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.92 6.36 -51.93 -0.33 0.59 16 35 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 36 H 0.09 1.44 6.18 -51.93 -0.32 1.12 16 37 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -30.87 324.68 -7.84 -38.70 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.77 Total: 10.32 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.83 Total: -4.11 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.07 Total: -47.90 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.41 Total: -2.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.87 -7.84 -38.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076669107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.923 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds