Wall clock time and date at job start Tue Mar 31 2020 08:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47413 * 2 1 4 4 C 1.50701 * 109.46828 * 239.99835 * 2 1 3 5 5 C 1.38236 * 120.00725 * 265.01948 * 4 2 1 6 6 C 1.38224 * 120.01528 * 179.97438 * 5 4 2 7 7 C 1.38264 * 120.02372 * 0.02562 * 6 5 4 8 8 C 1.38199 * 120.01177 * 359.67909 * 7 6 5 9 9 C 1.38335 * 120.00592 * 85.00500 * 4 2 1 10 10 Cl 1.73599 * 120.01202 * 0.02562 * 9 4 2 11 11 N 1.46899 * 109.47005 * 120.00192 * 2 1 3 12 12 C 1.46896 * 110.99817 * 176.04719 * 11 2 1 13 13 C 1.46904 * 110.99948 * 299.99549 * 11 2 1 14 14 C 1.50697 * 109.47055 * 170.00080 * 13 11 2 15 15 O 1.21290 * 120.00205 * 0.02562 * 14 13 11 16 16 N 1.34782 * 119.99725 * 180.02562 * 14 13 11 17 17 C 1.37095 * 119.99726 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00408 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99743 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00097 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99872 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47193 * 119.99614 * 21 19 17 24 24 H 1.48496 * 109.46873 * 239.99693 * 21 19 17 25 25 H 1.09000 * 109.46630 * 59.99793 * 1 2 3 26 26 H 1.08999 * 109.46703 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46868 * 300.00386 * 1 2 3 28 28 H 1.08003 * 119.99208 * 359.96515 * 5 4 2 29 29 H 1.07991 * 119.98575 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.99322 * 179.97438 * 7 6 5 31 31 H 1.08000 * 120.00335 * 180.30335 * 8 7 6 32 32 H 1.08998 * 109.47596 * 59.99555 * 12 11 2 33 33 H 1.09003 * 109.47009 * 180.02562 * 12 11 2 34 34 H 1.08998 * 109.47208 * 299.99068 * 12 11 2 35 35 H 1.08995 * 109.47060 * 290.00750 * 13 11 2 36 36 H 1.09006 * 109.47056 * 50.00108 * 13 11 2 37 37 H 0.96996 * 120.00116 * 0.02562 * 16 14 13 38 38 H 0.97004 * 119.99892 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.3607 -2.0518 -1.1686 6 6 2.8209 -2.7038 -2.2973 7 6 2.9536 -2.0146 -3.4885 8 6 2.6198 -0.6751 -3.5531 9 6 2.1646 -0.0205 -2.4222 10 17 1.7526 1.6641 -2.5005 11 7 2.0197 -0.6925 1.1994 12 6 3.4851 -0.7945 1.1870 13 6 1.5487 -0.0264 2.4211 14 6 1.8580 -0.8911 3.6159 15 8 2.4163 -1.9572 3.4647 16 7 1.5142 -0.4798 4.8525 17 6 1.7961 -1.2662 5.9395 18 1 2.2939 -2.2152 5.8050 19 6 1.4412 -0.8424 7.2143 20 7 0.8359 0.3124 7.3781 21 14 1.8258 -1.9137 8.6956 22 1 2.5065 -3.1545 8.2457 23 1 2.7133 -1.1713 9.6263 24 1 0.5628 -2.2672 9.3920 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2578 -2.5905 -0.2382 29 1 3.0769 -3.7517 -2.2485 30 1 3.3136 -2.5243 -4.3700 31 1 2.7188 -0.1381 -4.4849 32 1 3.9187 0.2051 1.1591 33 1 3.8209 -1.3117 2.0858 34 1 3.8030 -1.3532 0.3068 35 1 2.0519 0.9346 2.5279 36 1 0.4723 0.1325 2.3564 37 1 1.0675 0.3726 4.9734 38 1 0.5885 0.6084 8.2681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076669110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:36 Heat of formation + Delta-G solvation = -5.231153 kcal Electronic energy + Delta-G solvation = -21458.222142 eV Core-core repulsion = 18133.833449 eV Total energy + Delta-G solvation = -3324.388693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.00990 -38.44042 -36.67330 -36.50486 -33.91159 -32.07912 -31.23676 -30.87601 -29.61764 -27.71635 -24.87535 -24.32781 -22.99803 -22.44021 -20.17004 -19.07331 -17.83593 -17.21160 -16.39132 -15.90377 -15.32396 -14.81508 -14.62276 -14.57000 -14.14407 -13.85120 -13.67754 -13.60621 -13.38076 -12.90839 -12.44097 -12.18478 -11.95719 -11.66852 -11.62765 -11.49692 -11.47177 -11.27439 -11.13681 -11.09397 -10.85540 -10.46824 -10.33366 -10.21018 -9.47175 -8.87998 -8.76426 -8.42601 -7.96460 -7.84190 -6.40405 -3.81022 1.05290 1.19501 2.03404 3.17107 3.27620 3.34611 3.53389 3.91650 3.94704 4.24328 4.54365 4.77620 4.92629 5.07255 5.15406 5.23193 5.26426 5.37164 5.39171 5.56243 5.62252 5.76283 5.78021 5.90609 5.95586 6.00934 6.04351 6.12161 6.27141 6.31947 6.34975 6.40918 6.59033 6.75298 7.29083 7.39696 7.56715 8.08232 8.63511 9.19767 9.56392 10.08138 10.77472 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.030256 B = 0.003319 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.202421 B = 8432.984671 C = 9057.136021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.115 3.885 3 H 0.054 0.946 4 C -0.063 4.063 5 C -0.081 4.081 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.034 4.034 10 Cl -0.074 7.074 11 N -0.511 5.511 12 C 0.014 3.986 13 C 0.042 3.958 14 C 0.446 3.554 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.013 0.987 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.392 0.608 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 1.311 -20.144 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.006 3.994 3 H 0.072 0.928 4 C -0.065 4.065 5 C -0.099 4.099 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.136 4.136 9 C -0.061 4.061 10 Cl -0.045 7.045 11 N -0.235 5.235 12 C -0.134 4.134 13 C -0.089 4.089 14 C 0.232 3.768 15 O -0.462 6.462 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.032 0.968 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.225 0.775 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.318 0.360 -20.065 20.112 hybrid contribution 0.169 1.147 0.818 1.419 sum 1.487 1.507 -19.248 19.364 Atomic orbital electron populations 1.21876 0.93024 1.03113 1.01986 1.20595 0.96059 0.95047 0.87685 0.92779 1.19683 0.99067 0.94436 0.93273 1.21351 0.95865 0.93208 0.99501 1.21338 0.99451 1.00388 0.92715 1.21090 1.00132 0.93665 0.98335 1.20941 1.00506 0.95025 0.97142 1.20798 1.04456 0.85452 0.95386 1.98355 1.92212 1.15488 1.98456 1.61610 1.11274 1.50825 0.99783 1.22704 0.86502 0.99576 1.04593 1.21937 1.01504 0.95503 0.89967 1.19704 0.85109 0.88261 0.83767 1.90474 1.46365 1.24107 1.85220 1.41869 1.52750 1.20765 1.04792 1.19741 1.35965 1.02928 0.84054 0.87864 1.25255 0.96974 0.96695 0.99060 1.69622 1.40843 1.19977 1.23917 0.85813 0.78078 0.79814 0.80716 1.19225 1.20812 1.20775 0.92134 0.91379 0.91584 0.83098 0.85431 0.85472 0.85299 0.96838 0.88404 0.91608 0.93445 0.88867 0.77516 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.97 37.16 0.33 -1.47 16 2 C 0.11 1.58 1.80 -68.86 -0.12 1.46 16 3 H 0.05 0.76 7.12 -51.93 -0.37 0.39 16 4 C -0.06 -0.82 4.31 -104.59 -0.45 -1.27 16 5 C -0.08 -1.03 7.33 -39.59 -0.29 -1.32 16 6 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 7 C -0.11 -1.06 10.05 -39.59 -0.40 -1.46 16 8 C -0.12 -1.18 9.83 -39.55 -0.39 -1.57 16 9 C -0.03 -0.40 6.31 -39.50 -0.25 -0.65 16 10 Cl -0.07 -0.83 27.17 -51.86 -1.41 -2.24 16 11 N -0.51 -8.46 3.50 -237.73 -0.83 -9.29 16 12 C 0.01 0.23 8.46 60.06 0.51 0.74 16 13 C 0.04 0.75 5.26 -4.98 -0.03 0.73 16 14 C 0.45 10.41 7.48 -10.98 -0.08 10.33 16 15 O -0.58 -15.21 13.91 5.55 0.08 -15.13 16 16 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 21 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H 0.06 0.69 7.90 -51.93 -0.41 0.28 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.82 6.20 -51.93 -0.32 0.49 16 28 H 0.15 2.15 6.85 -52.48 -0.36 1.79 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 34 H 0.07 0.99 5.31 -51.93 -0.28 0.71 16 35 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 36 H 0.09 1.52 5.83 -51.93 -0.30 1.22 16 37 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -29.95 325.79 -8.13 -38.08 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.71 Total: 9.82 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.81 Total: -4.03 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.17 Total: -47.40 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.41 Total: -2.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.95 -8.13 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076669110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.853 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds