Wall clock time and date at job start Tue Mar 31 2020 08:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47045 * 2 1 4 4 C 1.46498 * 120.00382 * 269.99622 * 3 2 1 5 5 C 1.50698 * 109.47327 * 270.00691 * 4 3 2 6 6 H 1.07998 * 120.00198 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99810 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47174 * 90.00036 * 9 7 5 11 11 H 1.48504 * 109.46909 * 209.99712 * 9 7 5 12 12 H 1.48500 * 109.46821 * 329.99820 * 9 7 5 13 13 C 1.34782 * 119.99712 * 90.00448 * 3 2 1 14 14 O 1.21586 * 120.00094 * 179.97438 * 13 3 2 15 15 N 1.34779 * 119.99678 * 359.97438 * 13 3 2 16 16 C 1.40009 * 119.99508 * 184.46233 * 15 13 3 17 17 C 1.38848 * 120.07447 * 325.30490 * 16 15 13 18 18 C 1.38121 * 119.94211 * 180.25676 * 17 16 15 19 19 C 1.38295 * 120.08769 * 359.44870 * 18 17 16 20 20 C 1.38259 * 120.14936 * 0.25649 * 19 18 17 21 21 C 1.50699 * 119.97003 * 180.02562 * 20 19 18 22 22 C 1.38227 * 120.05704 * 0.02562 * 20 19 18 23 23 Cl 1.73605 * 120.04515 * 180.02562 * 22 20 19 24 24 H 1.09000 * 109.47004 * 299.99852 * 1 2 3 25 25 H 1.09002 * 109.47318 * 59.99442 * 1 2 3 26 26 H 1.08996 * 109.47702 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47004 * 240.00148 * 2 1 3 28 28 H 1.08997 * 109.46895 * 120.00417 * 2 1 3 29 29 H 1.09003 * 109.46543 * 30.00914 * 4 3 2 30 30 H 1.09003 * 109.46823 * 150.00218 * 4 3 2 31 31 H 0.97003 * 120.00557 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00317 * 4.46231 * 15 13 3 33 33 H 1.07996 * 120.02971 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.95560 * 179.72752 * 18 17 16 35 35 H 1.07999 * 119.91838 * 180.27685 * 19 18 17 36 36 H 1.09001 * 109.47325 * 89.99724 * 21 20 19 37 37 H 1.09002 * 109.47580 * 209.99972 * 21 20 19 38 38 H 1.09005 * 109.47340 * 329.99805 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3905 -2.8773 8 7 3.3495 3.1267 -3.6174 9 14 5.9139 2.0975 -3.4163 10 1 5.9776 0.8769 -4.2596 11 1 6.3928 3.2653 -4.1987 12 1 6.7737 1.9175 -2.2190 13 6 2.2430 2.0165 1.1673 14 8 2.6487 3.1627 1.1674 15 7 2.0179 1.3812 2.3344 16 6 2.1614 2.0696 3.5451 17 6 3.1397 3.0457 3.6788 18 6 3.2822 3.7195 4.8761 19 6 2.4445 3.4311 5.9379 20 6 1.4651 2.4641 5.8070 21 6 0.5540 2.1534 6.9665 22 6 1.3208 1.7820 4.6134 23 17 0.0905 0.5683 4.4491 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.5817 1.6878 -2.0283 30 1 2.0956 3.1411 -1.1382 31 1 3.6755 3.5172 -4.4433 32 1 1.7566 0.4470 2.3357 33 1 3.7916 3.2748 2.8488 34 1 4.0460 4.4757 4.9817 35 1 2.5555 3.9627 6.8714 36 1 -0.3272 2.7931 6.9177 37 1 0.2476 1.1085 6.9181 38 1 1.0827 2.3340 7.9025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078635874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:54 Heat of formation + Delta-G solvation = -9.781281 kcal Electronic energy + Delta-G solvation = -21685.579926 eV Core-core repulsion = 18360.993925 eV Total energy + Delta-G solvation = -3324.586001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39491 -38.77882 -36.45331 -35.57698 -34.63502 -32.78612 -32.21585 -30.16295 -29.60743 -27.04788 -26.74885 -23.42083 -23.07471 -22.25654 -21.43506 -19.18332 -17.96338 -16.80269 -16.46687 -16.34589 -15.60616 -15.10593 -14.57286 -14.33420 -14.18361 -13.84415 -13.68696 -13.32408 -13.18911 -12.72192 -12.43104 -12.32623 -12.08437 -11.90937 -11.75868 -11.48470 -11.43067 -11.22149 -10.95340 -10.82389 -10.76530 -10.54154 -10.15781 -10.05608 -9.66607 -9.27047 -8.57549 -8.44289 -8.04764 -7.62926 -6.04938 -4.09787 1.20602 1.36081 2.12831 3.11329 3.29661 3.36549 3.41199 3.57272 3.94866 4.32240 4.47823 4.70920 4.88311 5.18581 5.23236 5.28744 5.32150 5.43333 5.48174 5.55507 5.58451 5.67363 5.74554 5.95331 6.01028 6.18152 6.27782 6.30707 6.46333 6.54277 6.67194 6.77382 7.10625 7.33127 7.48316 7.62973 7.92600 8.21911 8.53180 8.90622 9.18713 9.55599 11.02912 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.004326 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.964641 B = 6471.429362 C = 7418.567213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.700 3.300 14 O -0.567 6.567 15 N -0.693 5.693 16 C 0.197 3.803 17 C -0.117 4.117 18 C -0.091 4.091 19 C -0.138 4.138 20 C -0.062 4.062 21 C -0.115 4.115 22 C -0.077 4.077 23 Cl -0.072 7.072 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.404 0.596 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -5.566 18.339 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.338 5.338 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.402 3.598 14 O -0.443 6.443 15 N -0.343 5.343 16 C 0.098 3.902 17 C -0.138 4.138 18 C -0.110 4.110 19 C -0.158 4.158 20 C -0.063 4.063 21 C -0.172 4.172 22 C -0.107 4.107 23 Cl -0.044 7.044 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.698 -4.754 17.967 19.439 hybrid contribution 0.690 -0.776 -0.513 1.158 sum -5.008 -5.530 17.454 18.981 Atomic orbital electron populations 1.22243 0.96547 1.01531 1.02640 1.21379 0.93729 0.84251 1.02386 1.47622 1.66755 1.13314 1.06157 1.19250 0.96261 0.93519 0.76830 1.21450 0.96951 1.31930 1.06286 0.92465 1.24919 0.97832 0.94886 0.96378 1.69930 1.35696 1.33381 1.14325 0.86501 0.84697 0.77661 0.78575 1.20672 1.21086 1.19925 1.15893 0.79157 0.84730 0.79992 1.90880 1.51310 1.16691 1.85446 1.43028 1.73352 1.14450 1.03475 1.17303 0.93429 0.94986 0.84433 1.21491 0.97343 0.96223 0.98711 1.21157 0.98770 0.98826 0.92270 1.20886 0.96518 0.98764 0.99595 1.19479 0.97502 0.95799 0.93568 1.20822 0.98396 1.02728 0.95207 1.20580 0.94905 0.98817 0.96365 1.98325 1.53583 1.54748 1.97709 0.92952 0.91766 0.92078 0.89380 0.92602 0.94721 0.93677 0.92702 0.75855 0.82810 0.85262 0.85489 0.90835 0.91032 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.80 2.46 -180.80 -0.44 -13.24 16 4 C 0.26 6.74 5.16 -5.20 -0.03 6.72 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.74 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.70 14.98 8.12 -86.91 -0.71 14.28 16 14 O -0.57 -14.26 13.34 5.29 0.07 -14.19 16 15 N -0.69 -11.81 4.93 -14.19 -0.07 -11.88 16 16 C 0.20 3.19 6.31 -83.64 -0.53 2.66 16 17 C -0.12 -1.92 8.70 -39.40 -0.34 -2.26 16 18 C -0.09 -1.18 10.04 -39.60 -0.40 -1.58 16 19 C -0.14 -1.57 9.70 -39.55 -0.38 -1.95 16 20 C -0.06 -0.74 5.88 -104.62 -0.62 -1.35 16 21 C -0.11 -1.02 9.61 36.00 0.35 -0.67 16 22 C -0.08 -1.06 6.33 -39.32 -0.25 -1.31 16 23 Cl -0.07 -0.88 26.30 -51.86 -1.36 -2.24 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 28 H 0.06 0.76 6.30 -51.93 -0.33 0.43 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.40 5.90 5.78 -40.82 -0.24 5.67 16 33 H 0.15 2.93 6.20 -52.49 -0.33 2.60 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.63 6.90 -51.93 -0.36 0.27 16 38 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -31.96 333.66 -9.00 -40.96 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.97 Total: 3.68 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.97 Total: 0.79 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.22 Total: -50.75 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.07 Total: -14.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.36 Total: -2.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.96 -9.00 -40.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078635874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.181 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds