Wall clock time and date at job start Tue Mar 31 2020 08:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46794 * 2 1 4 4 C 1.50700 * 109.46880 * 119.99989 * 2 1 3 5 5 O 1.21292 * 119.99929 * 106.32439 * 4 2 1 6 6 N 1.34770 * 120.00439 * 286.31330 * 4 2 1 7 7 C 1.39927 * 120.00381 * 175.83807 * 6 4 2 8 8 C 1.38898 * 120.06298 * 214.75917 * 7 6 4 9 9 C 1.38102 * 119.95402 * 179.69669 * 8 7 6 10 10 C 1.38287 * 120.08060 * 0.57666 * 9 8 7 11 11 C 1.38378 * 120.12901 * 359.71887 * 10 9 8 12 12 Cl 1.73592 * 119.97743 * 180.02562 * 11 10 9 13 13 C 1.38257 * 120.04265 * 359.97438 * 11 10 9 14 14 N 1.46907 * 109.46926 * 240.00066 * 2 1 3 15 15 C 1.46894 * 110.99814 * 75.66180 * 14 2 1 16 16 C 1.46896 * 110.99851 * 311.70519 * 14 2 1 17 17 C 1.50696 * 109.46822 * 190.00194 * 16 14 2 18 18 H 1.07999 * 120.00242 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00241 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99762 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00322 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46995 * 120.00440 * 21 19 17 24 24 H 1.48501 * 109.46912 * 240.00284 * 21 19 17 25 25 H 1.08998 * 109.46794 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46813 * 299.99862 * 1 2 3 27 27 H 1.08998 * 109.46985 * 59.99844 * 1 2 3 28 28 H 0.97001 * 119.99378 * 355.56936 * 6 4 2 29 29 H 1.08003 * 120.02630 * 359.97438 * 8 7 6 30 30 H 1.07999 * 119.96270 * 180.29884 * 9 8 7 31 31 H 1.08002 * 119.93436 * 179.74465 * 10 9 8 32 32 H 1.07995 * 120.04054 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47571 * 61.70069 * 15 14 2 34 34 H 1.08998 * 109.47100 * 181.70529 * 15 14 2 35 35 H 1.09007 * 109.47333 * 301.69797 * 15 14 2 36 36 H 1.09002 * 109.46969 * 309.99937 * 16 14 2 37 37 H 1.08993 * 109.47275 * 70.00404 * 16 14 2 38 38 H 0.96998 * 119.99898 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5128 -1.8201 1.1364 6 7 1.9479 -0.1127 2.4354 7 6 2.3333 -0.8052 3.5886 8 6 1.6570 -0.5974 4.7838 9 6 2.0353 -1.2867 5.9191 10 6 3.0942 -2.1748 5.8702 11 6 3.7743 -2.3799 4.6827 12 17 5.1026 -3.4961 4.6255 13 6 3.3960 -1.6973 3.5415 14 7 2.0197 -0.6925 -1.1995 15 6 1.8750 0.1534 -2.3917 16 6 1.3349 -1.9794 -1.3808 17 6 2.0244 -2.7669 -2.4649 18 1 2.8849 -2.3526 -2.9692 19 6 1.5567 -4.0163 -2.8132 20 7 0.5085 -4.5206 -2.1995 21 14 2.4109 -4.9922 -4.1576 22 1 3.5557 -4.2084 -4.6869 23 1 2.9064 -6.2756 -3.5989 24 1 1.4498 -5.2685 -5.2554 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6235 0.7990 2.5028 29 1 0.8329 0.0996 4.8243 30 1 1.5064 -1.1288 6.8474 31 1 3.3906 -2.7096 6.7604 32 1 3.9266 -1.8577 2.6146 33 1 2.4733 1.0566 -2.2713 34 1 2.2168 -0.3946 -3.2697 35 1 0.8272 0.4260 -2.5188 36 1 1.3657 -2.5419 -0.4476 37 1 0.2975 -1.8022 -1.6642 38 1 0.1792 -5.3994 -2.4447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:52 Heat of formation + Delta-G solvation = -0.570431 kcal Electronic energy + Delta-G solvation = -21592.366006 eV Core-core repulsion = 18268.179417 eV Total energy + Delta-G solvation = -3324.186589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50344 -38.74610 -36.71944 -36.25919 -34.50240 -32.61040 -30.86342 -30.64547 -29.10756 -27.20449 -25.30173 -24.05134 -22.94320 -22.38963 -20.86259 -19.35290 -17.83540 -16.85634 -16.42156 -16.19650 -15.33764 -15.03655 -14.72911 -14.39693 -14.20778 -13.88156 -13.70583 -13.48439 -13.31935 -12.77398 -12.23678 -12.04792 -11.98961 -11.84560 -11.76922 -11.48592 -11.30737 -10.98832 -10.92274 -10.81698 -10.50717 -10.42915 -10.15457 -9.84273 -9.38605 -8.94698 -8.75387 -8.31334 -8.16143 -7.25674 -5.92524 -3.91557 1.07718 1.25006 2.15201 2.92168 3.10285 3.37264 3.44683 3.49298 3.65441 4.50199 4.73468 4.87514 4.99465 4.99698 5.05116 5.33661 5.36535 5.38334 5.41794 5.44989 5.74586 5.83505 5.92576 6.06110 6.13987 6.23057 6.27038 6.28392 6.36530 6.47002 6.70130 6.90816 7.30901 7.37172 7.51563 7.86741 8.20310 8.22298 8.47245 8.62656 9.14467 9.70572 11.18995 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.004498 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.896692 B = 6223.732618 C = 7494.044857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.069 3.931 3 H 0.091 0.909 4 C 0.514 3.486 5 O -0.471 6.471 6 N -0.683 5.683 7 C 0.171 3.829 8 C -0.149 4.149 9 C -0.091 4.091 10 C -0.135 4.135 11 C -0.014 4.014 12 Cl -0.069 7.069 13 C -0.115 4.115 14 N -0.522 5.522 15 C 0.036 3.964 16 C 0.186 3.814 17 C -0.500 4.500 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.286 1.286 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.408 0.592 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.015 0.985 36 H 0.053 0.947 37 H -0.009 1.009 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 12.065 15.479 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.044 4.044 3 H 0.109 0.891 4 C 0.300 3.700 5 O -0.340 6.340 6 N -0.331 5.331 7 C 0.076 3.924 8 C -0.169 4.169 9 C -0.110 4.110 10 C -0.155 4.155 11 C -0.041 4.041 12 Cl -0.040 7.040 13 C -0.136 4.136 14 N -0.246 5.246 15 C -0.112 4.112 16 C 0.062 3.938 17 C -0.539 4.539 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.213 1.213 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.244 0.756 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.008 0.992 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.233 10.874 15.333 18.929 hybrid contribution -0.618 -0.135 -0.776 1.001 sum 1.615 10.739 14.557 18.162 Atomic orbital electron populations 1.22380 0.95523 1.04093 1.01870 1.21508 0.94057 0.97642 0.91193 0.89089 1.21077 0.78404 0.86819 0.83662 1.90788 1.39882 1.18684 1.84641 1.43727 1.66809 1.17436 1.05102 1.17606 0.93081 0.95105 0.86634 1.20994 1.00518 1.03122 0.92316 1.20827 0.96357 0.95643 0.98137 1.20981 0.97167 1.00576 0.96782 1.20759 0.92760 0.95521 0.95069 1.98373 1.45926 1.60937 1.98757 1.21290 0.96368 0.97185 0.98751 1.62140 1.57535 1.05175 0.99729 1.22272 0.98064 0.96169 0.94712 1.19966 0.91260 0.83752 0.98865 1.21161 1.13429 1.01088 1.18228 0.92064 1.24945 0.95211 0.97525 0.96901 1.69968 1.24323 1.17574 1.42051 0.86486 0.79467 0.80129 0.81597 1.19718 1.21063 1.21250 0.90587 0.92781 0.91430 0.75603 0.85245 0.84950 0.85150 0.82872 0.93617 0.90112 0.96678 0.92894 0.99177 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.33 37.16 0.31 -2.43 16 2 C 0.07 1.15 2.70 -68.86 -0.19 0.96 16 3 H 0.09 1.19 7.98 -51.93 -0.41 0.78 16 4 C 0.51 9.06 6.77 -10.99 -0.07 8.98 16 5 O -0.47 -10.77 11.77 5.55 0.07 -10.71 16 6 N -0.68 -8.86 5.34 -9.87 -0.05 -8.91 16 7 C 0.17 2.33 6.30 -83.70 -0.53 1.81 16 8 C -0.15 -1.58 9.97 -39.39 -0.39 -1.97 16 9 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 10 C -0.14 -1.53 9.83 -39.51 -0.39 -1.91 16 11 C -0.01 -0.19 6.32 -39.52 -0.25 -0.44 16 12 Cl -0.07 -0.95 28.95 -51.86 -1.50 -2.46 16 13 C -0.12 -1.81 8.48 -39.36 -0.33 -2.14 16 14 N -0.52 -11.19 4.45 -237.73 -1.06 -12.25 16 15 C 0.04 0.67 9.25 60.06 0.56 1.23 16 16 C 0.19 4.93 3.24 -4.98 -0.02 4.92 16 17 C -0.50 -14.56 8.43 -34.44 -0.29 -14.85 16 18 H 0.06 1.77 7.14 -52.49 -0.37 1.39 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 21 Si 0.90 22.49 29.54 -169.99 -5.02 17.46 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H 0.08 1.44 6.53 -51.93 -0.34 1.10 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.99 6.90 -51.93 -0.36 0.63 16 28 H 0.41 3.60 8.82 -40.82 -0.36 3.24 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.15 2.83 6.23 -52.49 -0.33 2.50 16 33 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.08 1.65 6.72 -51.93 -0.35 1.30 16 35 H 0.01 0.26 6.83 -51.92 -0.35 -0.09 16 36 H 0.05 1.57 5.88 -51.93 -0.31 1.27 16 37 H -0.01 -0.26 6.85 -51.93 -0.36 -0.62 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -34.45 328.38 -8.76 -43.20 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.79 Total: 1.29 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.09 Total: -5.62 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.37 Total: -48.13 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.45 -8.76 -43.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.634 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds