Wall clock time and date at job start Tue Mar 31 2020 08:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46794 * 2 1 4 4 C 1.50700 * 109.46880 * 119.99989 * 2 1 3 5 5 O 1.21292 * 119.99929 * 106.32439 * 4 2 1 6 6 N 1.34770 * 120.00439 * 286.31330 * 4 2 1 7 7 C 1.39927 * 120.00381 * 175.83807 * 6 4 2 8 8 C 1.38898 * 120.06298 * 214.75917 * 7 6 4 9 9 C 1.38102 * 119.95402 * 179.69669 * 8 7 6 10 10 C 1.38287 * 120.08060 * 0.57666 * 9 8 7 11 11 C 1.38378 * 120.12901 * 359.71887 * 10 9 8 12 12 Cl 1.73592 * 119.97743 * 180.02562 * 11 10 9 13 13 C 1.38257 * 120.04265 * 359.97438 * 11 10 9 14 14 N 1.46907 * 109.46926 * 240.00066 * 2 1 3 15 15 C 1.46894 * 110.99814 * 75.66180 * 14 2 1 16 16 C 1.46896 * 110.99851 * 311.70519 * 14 2 1 17 17 C 1.50696 * 109.46822 * 190.00194 * 16 14 2 18 18 H 1.07999 * 120.00242 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00241 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99762 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00322 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46995 * 120.00440 * 21 19 17 24 24 H 1.48501 * 109.46912 * 240.00284 * 21 19 17 25 25 H 1.08998 * 109.46794 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46813 * 299.99862 * 1 2 3 27 27 H 1.08998 * 109.46985 * 59.99844 * 1 2 3 28 28 H 0.97001 * 119.99378 * 355.56936 * 6 4 2 29 29 H 1.08003 * 120.02630 * 359.97438 * 8 7 6 30 30 H 1.07999 * 119.96270 * 180.29884 * 9 8 7 31 31 H 1.08002 * 119.93436 * 179.74465 * 10 9 8 32 32 H 1.07995 * 120.04054 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47571 * 61.70069 * 15 14 2 34 34 H 1.08998 * 109.47100 * 181.70529 * 15 14 2 35 35 H 1.09007 * 109.47333 * 301.69797 * 15 14 2 36 36 H 1.09002 * 109.46969 * 309.99937 * 16 14 2 37 37 H 1.08993 * 109.47275 * 70.00404 * 16 14 2 38 38 H 0.96998 * 119.99898 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5128 -1.8201 1.1364 6 7 1.9479 -0.1127 2.4354 7 6 2.3333 -0.8052 3.5886 8 6 1.6570 -0.5974 4.7838 9 6 2.0353 -1.2867 5.9191 10 6 3.0942 -2.1748 5.8702 11 6 3.7743 -2.3799 4.6827 12 17 5.1026 -3.4961 4.6255 13 6 3.3960 -1.6973 3.5415 14 7 2.0197 -0.6925 -1.1995 15 6 1.8750 0.1534 -2.3917 16 6 1.3349 -1.9794 -1.3808 17 6 2.0244 -2.7669 -2.4649 18 1 2.8849 -2.3526 -2.9692 19 6 1.5567 -4.0163 -2.8132 20 7 0.5085 -4.5206 -2.1995 21 14 2.4109 -4.9922 -4.1576 22 1 3.5557 -4.2084 -4.6869 23 1 2.9064 -6.2756 -3.5989 24 1 1.4498 -5.2685 -5.2554 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6235 0.7990 2.5028 29 1 0.8329 0.0996 4.8243 30 1 1.5064 -1.1288 6.8474 31 1 3.3906 -2.7096 6.7604 32 1 3.9266 -1.8577 2.6146 33 1 2.4733 1.0566 -2.2713 34 1 2.2168 -0.3946 -3.2697 35 1 0.8272 0.4260 -2.5188 36 1 1.3657 -2.5419 -0.4476 37 1 0.2975 -1.8022 -1.6642 38 1 0.1792 -5.3994 -2.4447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:51 Heat of formation + Delta-G solvation = -25.394014 kcal Electronic energy + Delta-G solvation = -21593.442437 eV Core-core repulsion = 18268.179417 eV Total energy + Delta-G solvation = -3325.263020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72113 -39.90463 -38.13558 -37.42947 -35.72708 -34.76448 -32.17767 -31.70378 -30.22776 -29.19624 -26.76065 -25.68881 -24.11625 -23.59935 -22.25256 -20.75545 -18.92685 -18.62521 -18.05469 -17.25888 -16.68669 -16.44909 -16.20011 -15.91411 -15.49947 -15.35225 -15.08732 -14.55272 -14.48032 -14.38577 -14.02509 -13.60108 -13.18181 -13.10680 -12.94272 -12.78607 -12.71537 -12.63539 -12.46003 -12.28927 -12.23729 -11.99415 -11.76964 -11.31446 -11.27897 -10.68279 -10.43346 -9.78380 -9.19658 -8.94240 -8.18130 -6.25498 0.12038 0.27426 1.12707 1.35934 1.38772 1.51174 1.63754 1.97765 2.40227 2.69918 3.15075 3.39052 3.70811 3.93679 4.08502 4.12153 4.13909 4.17686 4.40472 4.49446 4.57247 4.60853 4.72614 4.80121 4.88066 5.09967 5.15779 5.20162 5.28743 5.32218 5.34054 5.38922 5.50071 5.64985 5.91836 6.11022 6.38675 6.42646 6.68796 6.90496 7.26525 7.42056 8.93570 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.004498 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.896692 B = 6223.732618 C = 7494.044857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 H 0.140 0.860 4 C 0.510 3.490 5 O -0.536 6.536 6 N -0.660 5.660 7 C 0.148 3.852 8 C -0.134 4.134 9 C -0.080 4.080 10 C -0.132 4.132 11 C -0.033 4.033 12 Cl -0.082 7.082 13 C -0.146 4.146 14 N -0.543 5.543 15 C 0.038 3.962 16 C 0.211 3.789 17 C -0.519 4.519 18 H 0.057 0.943 19 C -0.002 4.002 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.028 0.972 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.431 0.569 29 H 0.168 0.832 30 H 0.177 0.823 31 H 0.154 0.846 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.013 0.987 37 H -0.031 1.031 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 14.507 17.039 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.046 4.046 3 H 0.158 0.842 4 C 0.298 3.702 5 O -0.410 6.410 6 N -0.308 5.308 7 C 0.053 3.947 8 C -0.154 4.154 9 C -0.098 4.098 10 C -0.151 4.151 11 C -0.061 4.061 12 Cl -0.053 7.053 13 C -0.167 4.167 14 N -0.267 5.267 15 C -0.109 4.109 16 C 0.085 3.915 17 C -0.557 4.557 18 H 0.075 0.925 19 C -0.199 4.199 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.187 1.187 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.047 0.953 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.271 0.729 29 H 0.186 0.814 30 H 0.195 0.805 31 H 0.172 0.828 32 H 0.131 0.869 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.031 0.969 37 H -0.014 1.014 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.400 13.394 16.921 21.626 hybrid contribution -0.372 -0.806 -1.117 1.427 sum 1.028 12.588 15.805 20.231 Atomic orbital electron populations 1.22280 0.94176 1.01803 1.04545 1.21728 0.95087 0.99044 0.88699 0.84250 1.21355 0.77538 0.86096 0.85199 1.90781 1.42982 1.21519 1.85705 1.43370 1.65549 1.18175 1.03739 1.17842 0.93433 0.95595 0.87821 1.21420 1.00325 1.02833 0.90804 1.21381 0.95194 0.93723 0.99495 1.21363 0.96894 1.00559 0.96258 1.20946 0.93355 0.95918 0.95839 1.98357 1.46679 1.61426 1.98823 1.21122 0.98089 0.99576 0.97938 1.61895 1.57747 1.04522 1.02518 1.22282 0.99463 0.96599 0.92591 1.19403 0.90146 0.86035 0.95882 1.21564 1.13383 1.01890 1.18900 0.92459 1.25877 0.95899 0.98703 0.99404 1.70104 1.25873 1.18061 1.43736 0.85403 0.78709 0.78214 0.78712 1.18731 1.21028 1.19821 0.95272 0.88233 0.90543 0.72891 0.81415 0.80542 0.82845 0.86934 0.89536 0.92790 0.95573 0.96862 1.01386 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.93 8.33 71.98 0.60 -4.33 16 2 C 0.07 2.15 2.70 44.17 0.12 2.27 16 3 H 0.14 3.13 7.98 -2.39 -0.02 3.11 16 4 C 0.51 18.25 6.77 87.66 0.59 18.84 16 5 O -0.54 -26.24 11.77 -3.07 -0.04 -26.27 16 6 N -0.66 -16.20 5.34 -303.52 -1.62 -17.82 16 7 C 0.15 3.90 6.30 38.15 0.24 4.14 16 8 C -0.13 -2.34 9.97 22.40 0.22 -2.12 16 9 C -0.08 -1.23 10.04 22.25 0.22 -1.00 16 10 C -0.13 -2.68 9.83 22.31 0.22 -2.46 16 11 C -0.03 -0.95 6.32 22.31 0.14 -0.81 16 12 Cl -0.08 -2.37 28.95 -2.72 -0.08 -2.45 16 13 C -0.15 -4.81 8.48 22.41 0.19 -4.62 16 14 N -0.54 -23.62 4.45 -906.04 -4.03 -27.65 16 15 C 0.04 1.39 9.25 127.69 1.18 2.57 16 16 C 0.21 11.79 3.24 85.56 0.28 12.06 16 17 C -0.52 -31.43 8.43 25.60 0.22 -31.22 16 18 H 0.06 3.42 7.14 -2.91 -0.02 3.40 16 19 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 20 N -0.94 -59.99 13.29 21.45 0.28 -59.70 16 21 Si 0.96 47.32 29.54 68.60 2.03 49.35 16 22 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 25 H 0.03 1.12 6.53 -2.39 -0.02 1.10 16 26 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.08 2.08 6.90 -2.39 -0.02 2.06 16 28 H 0.43 6.13 8.82 -92.71 -0.82 5.31 16 29 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.11 4.61 6.23 -2.91 -0.02 4.60 16 33 H 0.09 2.40 8.12 -2.39 -0.02 2.38 16 34 H 0.05 2.22 6.72 -2.39 -0.02 2.20 16 35 H 0.03 0.87 6.83 -2.38 -0.02 0.86 16 36 H 0.01 0.85 5.88 -2.39 -0.01 0.84 16 37 H -0.03 -1.84 6.85 -2.39 -0.02 -1.85 16 38 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -83.16 328.38 1.50 -81.65 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.27 Total: 9.22 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 4.69 Total: -6.33 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -5.37 Total: -105.18 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.04 Total: -26.27 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.45 kcal Total: -83.16 1.50 -81.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.259 kcal (2) G-P(sol) polarization free energy of solvation -83.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds