Wall clock time and date at job start Tue Mar 31 2020 08:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50705 * 109.47035 * 240.00563 * 2 1 3 5 5 O 1.21280 * 119.99693 * 245.60294 * 4 2 1 6 6 N 1.34772 * 120.00112 * 65.59705 * 4 2 1 7 7 C 1.39927 * 119.99954 * 175.76189 * 6 4 2 8 8 C 1.38908 * 120.06105 * 214.90476 * 7 6 4 9 9 C 1.38098 * 119.94965 * 179.72542 * 8 7 6 10 10 C 1.38278 * 120.08521 * 0.57274 * 9 8 7 11 11 C 1.38381 * 120.12929 * 359.70311 * 10 9 8 12 12 Cl 1.73603 * 119.97911 * 180.02562 * 11 10 9 13 13 C 1.38246 * 120.04171 * 359.97438 * 11 10 9 14 14 N 1.46891 * 109.47306 * 120.00482 * 2 1 3 15 15 C 1.46903 * 111.00112 * 285.36866 * 14 2 1 16 16 C 1.46898 * 111.00099 * 49.31958 * 14 2 1 17 17 C 1.50700 * 109.47151 * 169.99958 * 16 14 2 18 18 H 1.08003 * 120.00083 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00233 * 179.97438 * 17 16 14 20 20 N 1.31519 * 119.99676 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00319 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47339 * 89.99971 * 21 19 17 23 23 H 1.48502 * 109.47401 * 210.00197 * 21 19 17 24 24 H 1.48500 * 109.47056 * 329.99904 * 21 19 17 25 25 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47030 * 299.99325 * 1 2 3 27 27 H 1.09001 * 109.47357 * 59.99738 * 1 2 3 28 28 H 0.96996 * 120.00393 * 355.76943 * 6 4 2 29 29 H 1.07994 * 120.02244 * 0.02562 * 8 7 6 30 30 H 1.08003 * 119.95847 * 180.27811 * 9 8 7 31 31 H 1.08007 * 119.93950 * 179.72505 * 10 9 8 32 32 H 1.08006 * 120.04293 * 180.02562 * 13 11 10 33 33 H 1.08991 * 109.47267 * 189.02558 * 15 14 2 34 34 H 1.09000 * 109.46919 * 309.02253 * 15 14 2 35 35 H 1.08994 * 109.47356 * 69.01939 * 15 14 2 36 36 H 1.08999 * 109.46998 * 289.99917 * 16 14 2 37 37 H 1.09003 * 109.47517 * 50.00247 * 16 14 2 38 38 H 0.97007 * 119.99603 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.6435 -1.7523 -1.1222 6 7 1.8023 -0.1878 -2.4514 7 6 2.3440 -0.7991 -3.5875 8 6 2.7632 -0.0243 -4.6615 9 6 3.3027 -0.6298 -5.7794 10 6 3.4153 -2.0068 -5.8356 11 6 2.9935 -2.7823 -4.7699 12 17 3.1373 -4.5108 -4.8444 13 6 2.4588 -2.1814 -3.6456 14 7 2.0197 -0.6925 1.1993 15 6 1.8525 0.1438 2.3954 16 6 1.3524 -1.9904 1.3671 17 6 2.0443 -2.7744 2.4524 18 1 2.8944 -2.3507 2.9663 19 6 1.5913 -4.0321 2.7899 20 7 0.5558 -4.5479 2.1643 21 14 2.4484 -5.0036 4.1356 22 1 1.8190 -4.6969 5.4451 23 1 2.3228 -6.4563 3.8541 24 1 3.8851 -4.6300 4.1773 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2614 0.6122 -2.5425 29 1 2.6717 1.0509 -4.6204 30 1 3.6328 -0.0272 -6.6127 31 1 3.8335 -2.4781 -6.7128 32 1 2.1300 -2.7866 -2.8136 33 1 2.3644 -0.3207 3.2380 34 1 2.2777 1.1304 2.2111 35 1 0.7915 0.2425 2.6243 36 1 0.3101 -1.8301 1.6428 37 1 1.3991 -2.5468 0.4309 38 1 0.2374 -5.4330 2.4015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:55 Heat of formation + Delta-G solvation = -0.736841 kcal Electronic energy + Delta-G solvation = -21618.685598 eV Core-core repulsion = 18294.491793 eV Total energy + Delta-G solvation = -3324.193805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50517 -38.73978 -36.70675 -36.24647 -34.50799 -32.61765 -30.86126 -30.67023 -29.06528 -27.21914 -25.30098 -24.01919 -22.97837 -22.40130 -20.86060 -19.31010 -17.86551 -16.82535 -16.41031 -16.26728 -15.45022 -14.93206 -14.61162 -14.41909 -14.13599 -13.97636 -13.72004 -13.48637 -13.30430 -12.79065 -12.23819 -12.05056 -11.98549 -11.84484 -11.74535 -11.52604 -11.28857 -10.98331 -10.89789 -10.85082 -10.54044 -10.44303 -10.12719 -9.80578 -9.38992 -8.98633 -8.76156 -8.32598 -8.15813 -7.25766 -5.93272 -3.92315 1.07982 1.25490 2.17740 2.93135 3.10692 3.37511 3.43988 3.49230 3.65808 4.49778 4.73390 4.86738 4.97603 4.99170 5.05626 5.34021 5.35297 5.39185 5.41520 5.44036 5.75319 5.81537 5.93093 6.02442 6.14573 6.23373 6.28247 6.29590 6.37817 6.44834 6.68471 6.91868 7.29141 7.34004 7.51338 7.85979 8.17259 8.21115 8.46666 8.62193 9.13129 9.69993 11.18175 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.004663 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.870970 B = 6003.896868 C = 7505.183515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.094 0.906 4 C 0.513 3.487 5 O -0.471 6.471 6 N -0.684 5.684 7 C 0.171 3.829 8 C -0.149 4.149 9 C -0.091 4.091 10 C -0.136 4.136 11 C -0.014 4.014 12 Cl -0.067 7.067 13 C -0.115 4.115 14 N -0.521 5.521 15 C 0.040 3.960 16 C 0.190 3.810 17 C -0.500 4.500 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.896 3.104 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.408 0.592 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.017 0.983 36 H -0.009 1.009 37 H 0.047 0.953 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 11.980 -15.407 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.044 4.044 3 H 0.112 0.888 4 C 0.300 3.700 5 O -0.339 6.339 6 N -0.331 5.331 7 C 0.076 3.924 8 C -0.170 4.170 9 C -0.110 4.110 10 C -0.155 4.155 11 C -0.041 4.041 12 Cl -0.038 7.038 13 C -0.136 4.136 14 N -0.245 5.245 15 C -0.108 4.108 16 C 0.065 3.935 17 C -0.539 4.539 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.724 3.276 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.244 0.756 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.172 0.828 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.009 0.991 37 H 0.065 0.935 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.869 10.795 -15.261 18.786 hybrid contribution -0.736 -0.202 0.768 1.083 sum 1.133 10.593 -14.493 17.988 Atomic orbital electron populations 1.22424 0.95715 1.04050 1.01911 1.21548 0.93899 0.97784 0.91205 0.88830 1.21064 0.79460 0.85869 0.83647 1.90786 1.36716 1.21082 1.85353 1.43725 1.53357 1.31257 1.04772 1.17611 0.96359 0.91150 0.87314 1.20981 1.01992 0.99763 0.94291 1.20816 0.98640 0.93792 0.97778 1.20980 1.02648 0.93723 0.98189 1.20771 1.02336 0.85016 0.95965 1.98380 1.96534 1.10534 1.98395 1.21329 1.00361 0.93907 0.97984 1.62120 1.57828 1.04972 0.99589 1.22227 0.98857 0.95562 0.94189 1.19910 0.91443 0.83519 0.98625 1.21112 1.14226 1.00499 1.18051 0.92114 1.24941 0.95236 0.97511 0.96877 1.69957 1.25157 1.17008 1.41848 0.86534 0.80092 0.79206 0.81800 1.20881 1.21312 1.19811 0.90601 0.91415 0.92824 0.75590 0.85272 0.84979 0.85162 0.82803 0.90524 0.93730 0.96413 0.99093 0.93490 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.33 37.16 0.31 -2.39 16 2 C 0.07 1.14 2.70 -68.87 -0.19 0.96 16 3 H 0.09 1.25 7.85 -51.93 -0.41 0.84 16 4 C 0.51 9.08 6.68 -10.99 -0.07 9.01 16 5 O -0.47 -10.77 11.98 5.56 0.07 -10.70 16 6 N -0.68 -8.95 5.31 -9.87 -0.05 -9.01 16 7 C 0.17 2.35 6.30 -83.70 -0.53 1.82 16 8 C -0.15 -1.56 9.97 -39.38 -0.39 -1.95 16 9 C -0.09 -0.88 10.04 -39.62 -0.40 -1.28 16 10 C -0.14 -1.53 9.83 -39.51 -0.39 -1.92 16 11 C -0.01 -0.19 6.32 -39.53 -0.25 -0.44 16 12 Cl -0.07 -0.97 28.95 -51.86 -1.50 -2.47 16 13 C -0.11 -1.85 8.48 -39.36 -0.33 -2.19 16 14 N -0.52 -11.20 4.40 -237.74 -1.05 -12.24 16 15 C 0.04 0.74 9.02 60.07 0.54 1.28 16 16 C 0.19 5.00 3.27 -4.98 -0.02 4.98 16 17 C -0.50 -14.54 8.58 -34.44 -0.30 -14.83 16 18 H 0.06 1.75 7.10 -52.48 -0.37 1.38 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 21 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.08 1.39 6.53 -51.93 -0.34 1.05 16 26 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 27 H 0.05 0.59 7.84 -51.93 -0.41 0.18 16 28 H 0.41 3.69 8.52 -40.82 -0.35 3.34 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.15 3.01 6.24 -52.48 -0.33 2.68 16 33 H 0.08 1.54 7.01 -51.93 -0.36 1.17 16 34 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 35 H 0.02 0.32 7.12 -51.93 -0.37 -0.05 16 36 H -0.01 -0.24 6.79 -51.93 -0.35 -0.59 16 37 H 0.05 1.38 6.04 -51.93 -0.31 1.07 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -34.30 328.25 -8.76 -43.06 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.78 Total: 1.21 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.11 Total: -5.44 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.36 Total: -48.05 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.30 -8.76 -43.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.319 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds