Wall clock time and date at job start Tue Mar 31 2020 08:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50705 * 109.47035 * 240.00563 * 2 1 3 5 5 O 1.21280 * 119.99693 * 245.60294 * 4 2 1 6 6 N 1.34772 * 120.00112 * 65.59705 * 4 2 1 7 7 C 1.39927 * 119.99954 * 175.76189 * 6 4 2 8 8 C 1.38908 * 120.06105 * 214.90476 * 7 6 4 9 9 C 1.38098 * 119.94965 * 179.72542 * 8 7 6 10 10 C 1.38278 * 120.08521 * 0.57274 * 9 8 7 11 11 C 1.38381 * 120.12929 * 359.70311 * 10 9 8 12 12 Cl 1.73603 * 119.97911 * 180.02562 * 11 10 9 13 13 C 1.38246 * 120.04171 * 359.97438 * 11 10 9 14 14 N 1.46891 * 109.47306 * 120.00482 * 2 1 3 15 15 C 1.46903 * 111.00112 * 285.36866 * 14 2 1 16 16 C 1.46898 * 111.00099 * 49.31958 * 14 2 1 17 17 C 1.50700 * 109.47151 * 169.99958 * 16 14 2 18 18 H 1.08003 * 120.00083 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00233 * 179.97438 * 17 16 14 20 20 N 1.31519 * 119.99676 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00319 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47339 * 89.99971 * 21 19 17 23 23 H 1.48502 * 109.47401 * 210.00197 * 21 19 17 24 24 H 1.48500 * 109.47056 * 329.99904 * 21 19 17 25 25 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47030 * 299.99325 * 1 2 3 27 27 H 1.09001 * 109.47357 * 59.99738 * 1 2 3 28 28 H 0.96996 * 120.00393 * 355.76943 * 6 4 2 29 29 H 1.07994 * 120.02244 * 0.02562 * 8 7 6 30 30 H 1.08003 * 119.95847 * 180.27811 * 9 8 7 31 31 H 1.08007 * 119.93950 * 179.72505 * 10 9 8 32 32 H 1.08006 * 120.04293 * 180.02562 * 13 11 10 33 33 H 1.08991 * 109.47267 * 189.02558 * 15 14 2 34 34 H 1.09000 * 109.46919 * 309.02253 * 15 14 2 35 35 H 1.08994 * 109.47356 * 69.01939 * 15 14 2 36 36 H 1.08999 * 109.46998 * 289.99917 * 16 14 2 37 37 H 1.09003 * 109.47517 * 50.00247 * 16 14 2 38 38 H 0.97007 * 119.99603 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.6435 -1.7523 -1.1222 6 7 1.8023 -0.1878 -2.4514 7 6 2.3440 -0.7991 -3.5875 8 6 2.7632 -0.0243 -4.6615 9 6 3.3027 -0.6298 -5.7794 10 6 3.4153 -2.0068 -5.8356 11 6 2.9935 -2.7823 -4.7699 12 17 3.1373 -4.5108 -4.8444 13 6 2.4588 -2.1814 -3.6456 14 7 2.0197 -0.6925 1.1993 15 6 1.8525 0.1438 2.3954 16 6 1.3524 -1.9904 1.3671 17 6 2.0443 -2.7744 2.4524 18 1 2.8944 -2.3507 2.9663 19 6 1.5913 -4.0321 2.7899 20 7 0.5558 -4.5479 2.1643 21 14 2.4484 -5.0036 4.1356 22 1 1.8190 -4.6969 5.4451 23 1 2.3228 -6.4563 3.8541 24 1 3.8851 -4.6300 4.1773 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2614 0.6122 -2.5425 29 1 2.6717 1.0509 -4.6204 30 1 3.6328 -0.0272 -6.6127 31 1 3.8335 -2.4781 -6.7128 32 1 2.1300 -2.7866 -2.8136 33 1 2.3644 -0.3207 3.2380 34 1 2.2777 1.1304 2.2111 35 1 0.7915 0.2425 2.6243 36 1 0.3101 -1.8301 1.6428 37 1 1.3991 -2.5468 0.4309 38 1 0.2374 -5.4330 2.4015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:54 Heat of formation + Delta-G solvation = -25.550763 kcal Electronic energy + Delta-G solvation = -21619.761611 eV Core-core repulsion = 18294.491793 eV Total energy + Delta-G solvation = -3325.269817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.72934 -39.90386 -38.13961 -37.43611 -35.74152 -34.77214 -32.19714 -31.71270 -30.19486 -29.20729 -26.76296 -25.66462 -24.17229 -23.59130 -22.26736 -20.70740 -18.97200 -18.63565 -18.03893 -17.31448 -16.69596 -16.50573 -16.20117 -15.66957 -15.50560 -15.40627 -15.20714 -14.58054 -14.44932 -14.37851 -14.03184 -13.60070 -13.20516 -13.03192 -12.97429 -12.84704 -12.75711 -12.61472 -12.46081 -12.32325 -12.23077 -11.99740 -11.76125 -11.37241 -11.22124 -10.66461 -10.49968 -9.79220 -9.20352 -8.94556 -8.18901 -6.26583 0.11892 0.26827 1.12837 1.35608 1.39124 1.49965 1.64741 1.97514 2.39734 2.69685 3.14223 3.36795 3.69037 3.93605 4.07855 4.11633 4.13242 4.18018 4.40290 4.49723 4.55667 4.63846 4.70655 4.80045 4.86318 5.08837 5.13863 5.20427 5.28523 5.30518 5.34097 5.38603 5.47378 5.64093 5.91948 6.09071 6.37546 6.41188 6.68300 6.88964 7.26134 7.41248 8.92426 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.004663 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.870970 B = 6003.896868 C = 7505.183515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.067 3.933 3 H 0.143 0.857 4 C 0.509 3.491 5 O -0.536 6.536 6 N -0.661 5.661 7 C 0.149 3.851 8 C -0.130 4.130 9 C -0.077 4.077 10 C -0.130 4.130 11 C -0.033 4.033 12 Cl -0.085 7.085 13 C -0.149 4.149 14 N -0.542 5.542 15 C 0.042 3.958 16 C 0.215 3.785 17 C -0.520 4.520 18 H 0.057 0.943 19 C -0.002 4.002 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.269 1.269 25 H 0.028 0.972 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.430 0.570 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.155 0.845 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.021 0.979 36 H -0.030 1.030 37 H 0.007 0.993 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 15.484 -16.900 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.046 4.046 3 H 0.160 0.840 4 C 0.297 3.703 5 O -0.409 6.409 6 N -0.310 5.310 7 C 0.054 3.946 8 C -0.150 4.150 9 C -0.096 4.096 10 C -0.149 4.149 11 C -0.060 4.060 12 Cl -0.056 7.056 13 C -0.170 4.170 14 N -0.266 5.266 15 C -0.105 4.105 16 C 0.089 3.911 17 C -0.558 4.558 18 H 0.075 0.925 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.194 1.194 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.271 0.729 29 H 0.189 0.811 30 H 0.197 0.803 31 H 0.172 0.828 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.039 0.961 36 H -0.013 1.013 37 H 0.025 0.975 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.628 14.369 -16.783 22.250 hybrid contribution -0.970 -1.187 1.088 1.880 sum 1.659 13.182 -15.696 20.564 Atomic orbital electron populations 1.22326 0.94273 1.01816 1.04656 1.21770 0.94992 0.99133 0.88658 0.83994 1.21370 0.78609 0.85092 0.85264 1.90780 1.39961 1.23778 1.86397 1.43380 1.52829 1.31337 1.03407 1.17840 0.97759 0.90494 0.88472 1.21423 0.99547 1.01480 0.92583 1.21398 0.96476 0.93162 0.98538 1.21365 1.01322 0.94628 0.97617 1.20952 1.03791 0.84531 0.96760 1.98362 1.96681 1.12108 1.98429 1.21096 1.03056 0.95243 0.97622 1.61864 1.58114 1.04229 1.02425 1.22242 0.99165 0.96781 0.92359 1.19351 0.90295 0.85872 0.95606 1.21520 1.14220 1.01326 1.18750 0.92466 1.25882 0.95922 0.98679 0.99388 1.70100 1.26700 1.17428 1.43509 0.85447 0.79002 0.77390 0.79179 1.19073 1.21035 1.19360 0.95271 0.90452 0.88211 0.72943 0.81105 0.80293 0.82777 0.87761 0.92863 0.89194 0.96094 1.01275 0.97530 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 8.33 71.98 0.60 -4.36 16 2 C 0.07 2.15 2.70 44.17 0.12 2.27 16 3 H 0.14 3.20 7.85 -2.39 -0.02 3.19 16 4 C 0.51 18.35 6.68 87.66 0.59 18.93 16 5 O -0.54 -26.35 11.98 -3.03 -0.04 -26.39 16 6 N -0.66 -16.48 5.31 -303.52 -1.61 -18.09 16 7 C 0.15 3.95 6.30 38.15 0.24 4.19 16 8 C -0.13 -2.17 9.97 22.40 0.22 -1.95 16 9 C -0.08 -1.13 10.04 22.25 0.22 -0.91 16 10 C -0.13 -2.62 9.83 22.31 0.22 -2.40 16 11 C -0.03 -0.97 6.32 22.31 0.14 -0.83 16 12 Cl -0.08 -2.59 28.95 -2.72 -0.08 -2.67 16 13 C -0.15 -5.09 8.48 22.41 0.19 -4.91 16 14 N -0.54 -23.68 4.40 -906.08 -3.98 -27.66 16 15 C 0.04 1.53 9.02 127.69 1.15 2.68 16 16 C 0.21 12.00 3.27 85.56 0.28 12.28 16 17 C -0.52 -31.56 8.58 25.60 0.22 -31.34 16 18 H 0.06 3.42 7.10 -2.91 -0.02 3.40 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 20 N -0.94 -60.06 13.29 21.45 0.28 -59.77 16 21 Si 0.97 47.42 29.54 68.60 2.03 49.45 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 25 H 0.03 1.11 6.53 -2.39 -0.02 1.09 16 26 H 0.08 2.08 7.08 -2.39 -0.02 2.06 16 27 H 0.10 1.90 7.84 -2.39 -0.02 1.88 16 28 H 0.43 6.34 8.52 -92.71 -0.79 5.55 16 29 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.10 4.62 6.24 -2.91 -0.02 4.60 16 33 H 0.05 2.14 7.01 -2.39 -0.02 2.13 16 34 H 0.09 2.41 7.90 -2.39 -0.02 2.39 16 35 H 0.02 0.73 7.12 -2.39 -0.02 0.71 16 36 H -0.03 -1.77 6.79 -2.39 -0.02 -1.79 16 37 H 0.01 0.42 6.04 -2.39 -0.01 0.41 16 38 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 Total: -1.00 -84.06 328.25 1.55 -82.51 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.30 Total: 8.59 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.65 Total: -5.97 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -5.31 Total: -105.52 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.04 Total: -26.39 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.08 Total: -2.67 kcal Total: -84.06 1.55 -82.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.957 kcal (2) G-P(sol) polarization free energy of solvation -84.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds