Wall clock time and date at job start Tue Mar 31 2020 08:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 C 1.50699 * 109.47572 * 120.00158 * 2 1 3 5 5 O 1.21294 * 119.99984 * 106.72786 * 4 2 1 6 6 N 1.34777 * 120.00018 * 286.73591 * 4 2 1 7 7 C 1.39970 * 120.00166 * 185.35377 * 6 4 2 8 8 C 1.38864 * 120.05956 * 212.40628 * 7 6 4 9 9 C 1.38114 * 119.94329 * 180.27514 * 8 7 6 10 10 C 1.38382 * 120.05661 * 359.49074 * 9 8 7 11 11 Cl 1.73599 * 119.94313 * 180.25246 * 10 9 8 12 12 C 1.38388 * 120.11407 * 0.50954 * 10 9 8 13 13 C 1.38107 * 120.05849 * 359.74772 * 12 10 9 14 14 N 1.46904 * 109.47046 * 240.00282 * 2 1 3 15 15 C 1.46901 * 110.99758 * 75.78654 * 14 2 1 16 16 C 1.46893 * 110.99990 * 311.83370 * 14 2 1 17 17 C 1.50703 * 109.47350 * 190.00135 * 16 14 2 18 18 H 1.07999 * 119.99452 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00111 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99791 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00118 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46756 * 90.00072 * 21 19 17 23 23 H 1.48490 * 109.47201 * 209.99904 * 21 19 17 24 24 H 1.48498 * 109.47209 * 330.00505 * 21 19 17 25 25 H 1.08996 * 109.47601 * 59.99613 * 1 2 3 26 26 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47314 * 299.99488 * 1 2 3 28 28 H 0.96999 * 119.99888 * 5.34984 * 6 4 2 29 29 H 1.08004 * 120.02846 * 359.97438 * 8 7 6 30 30 H 1.08001 * 119.97199 * 179.72436 * 9 8 7 31 31 H 1.07994 * 119.97060 * 179.71779 * 12 10 9 32 32 H 1.07994 * 120.03267 * 179.97438 * 13 12 10 33 33 H 1.09006 * 109.46964 * 54.16686 * 15 14 2 34 34 H 1.08998 * 109.46683 * 174.16266 * 15 14 2 35 35 H 1.08995 * 109.47165 * 294.16583 * 15 14 2 36 36 H 1.09006 * 109.47225 * 310.00382 * 16 14 2 37 37 H 1.09001 * 109.47568 * 69.99605 * 16 14 2 38 38 H 0.96998 * 120.00006 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5196 -1.8171 1.1352 6 7 1.9402 -0.1161 2.4366 7 6 2.5067 -0.7255 3.5621 8 6 1.9175 -0.5669 4.8095 9 6 2.4817 -1.1645 5.9195 10 6 3.6273 -1.9295 5.7877 11 17 4.3303 -2.6847 7.1838 12 6 4.2165 -2.0891 4.5457 13 6 3.6593 -1.4893 3.4335 14 7 2.0196 -0.6925 -1.1995 15 6 1.8776 0.1547 -2.3912 16 6 1.3327 -1.9779 -1.3825 17 6 2.0219 -2.7659 -2.4666 18 1 2.8837 -2.3528 -2.9696 19 6 1.5522 -4.0142 -2.8163 20 7 2.1533 -4.7015 -3.7627 21 14 0.0620 -4.7289 -1.9457 22 1 -1.1718 -4.3346 -2.6720 23 1 0.1680 -6.2098 -1.9179 24 1 0.0050 -4.2105 -0.5554 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.4813 0.7339 2.5246 29 1 1.0215 0.0273 4.9124 30 1 2.0263 -1.0378 6.8906 31 1 5.1131 -2.6829 4.4462 32 1 4.1197 -1.6138 2.4645 33 1 2.3668 1.1129 -2.2162 34 1 2.3409 -0.3392 -3.2453 35 1 0.8198 0.3189 -2.5963 36 1 1.3614 -2.5413 -0.4498 37 1 0.2958 -1.7987 -1.6669 38 1 1.8231 -5.5799 -4.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:03 Heat of formation + Delta-G solvation = 2.197127 kcal Electronic energy + Delta-G solvation = -21514.795097 eV Core-core repulsion = 18190.728518 eV Total energy + Delta-G solvation = -3324.066578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63733 -38.89113 -36.94628 -36.35403 -34.58522 -32.57727 -31.20023 -30.85608 -29.02942 -27.89380 -25.43154 -23.99771 -23.15402 -22.32406 -20.79652 -19.41071 -17.90895 -16.99826 -16.89991 -16.60420 -15.42290 -15.01433 -14.79475 -14.29243 -14.24865 -14.06471 -13.65189 -13.58817 -13.41444 -13.10591 -12.44124 -12.41416 -12.25796 -12.03166 -11.94537 -11.63743 -11.45506 -11.19427 -11.09916 -10.96632 -10.55338 -10.24595 -10.16631 -9.85117 -9.54403 -9.19392 -8.98755 -8.48913 -8.11941 -7.45866 -5.98227 -3.93473 0.97425 1.17127 2.03434 2.76299 2.96412 3.31499 3.40341 3.44878 3.58263 4.48895 4.58092 4.68412 4.73624 4.80709 5.11094 5.17861 5.21084 5.27446 5.35905 5.39038 5.64559 5.74150 5.79028 5.86767 5.93921 6.12372 6.13737 6.17293 6.24814 6.32786 6.63486 6.80054 6.87657 7.02835 7.33756 7.68527 7.84833 7.99768 8.32496 8.70677 9.09555 9.64155 11.15290 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.003922 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.070034 B = 7138.182706 C = 7983.477093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.098 0.902 4 C 0.514 3.486 5 O -0.474 6.474 6 N -0.683 5.683 7 C 0.166 3.834 8 C -0.143 4.143 9 C -0.091 4.091 10 C -0.058 4.058 11 Cl -0.079 7.079 12 C -0.087 4.087 13 C -0.111 4.111 14 N -0.511 5.511 15 C 0.037 3.963 16 C 0.156 3.844 17 C -0.501 4.501 18 H 0.079 0.921 19 C 0.069 3.931 20 N -0.903 5.903 21 Si 0.871 3.129 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.267 1.267 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.408 0.592 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.017 0.983 36 H 0.049 0.951 37 H -0.017 1.017 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 13.060 18.709 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.048 4.048 3 H 0.116 0.884 4 C 0.301 3.699 5 O -0.343 6.343 6 N -0.330 5.330 7 C 0.070 3.930 8 C -0.164 4.164 9 C -0.111 4.111 10 C -0.085 4.085 11 Cl -0.050 7.050 12 C -0.106 4.106 13 C -0.131 4.131 14 N -0.235 5.235 15 C -0.111 4.111 16 C 0.030 3.970 17 C -0.540 4.540 18 H 0.097 0.903 19 C -0.132 4.132 20 N -0.542 5.542 21 Si 0.699 3.301 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.244 0.756 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.000 1.000 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.693 11.900 18.594 22.087 hybrid contribution -1.898 -0.004 0.461 1.954 sum -2.591 11.896 19.055 22.613 Atomic orbital electron populations 1.22419 0.95680 1.03682 1.02355 1.21602 0.93987 0.98051 0.91159 0.88437 1.21055 0.78669 0.86511 0.83686 1.90787 1.40391 1.18275 1.84859 1.43776 1.57645 1.25059 1.06522 1.17868 0.92342 0.96065 0.86684 1.20811 1.00664 1.03762 0.91144 1.20764 0.94504 0.96673 0.99121 1.20858 0.97664 1.01578 0.88424 1.98355 1.83912 1.81108 1.41660 1.20981 1.00232 0.99238 0.90157 1.21285 0.94163 0.97835 0.99862 1.61959 1.56898 1.04536 1.00078 1.22291 0.98773 0.95792 0.94235 1.20407 0.91275 0.86238 0.99030 1.20987 1.14678 1.00943 1.17363 0.90286 1.24838 0.96768 0.96717 0.94883 1.69888 1.40968 1.12875 1.30516 0.86912 0.83606 0.78704 0.80897 1.20491 1.21133 1.19149 0.91113 0.91156 0.92462 0.75593 0.84925 0.84842 0.84613 0.83297 0.93326 0.89765 0.96429 0.93279 0.99983 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.33 37.16 0.31 -2.15 16 2 C 0.07 1.00 2.70 -68.87 -0.19 0.81 16 3 H 0.10 1.17 7.87 -51.93 -0.41 0.76 16 4 C 0.51 8.38 6.67 -10.99 -0.07 8.30 16 5 O -0.47 -10.12 11.98 5.55 0.07 -10.05 16 6 N -0.68 -8.08 5.35 -9.85 -0.05 -8.13 16 7 C 0.17 2.08 6.30 -83.68 -0.53 1.55 16 8 C -0.14 -1.43 9.96 -39.40 -0.39 -1.83 16 9 C -0.09 -0.92 9.82 -39.57 -0.39 -1.31 16 10 C -0.06 -0.66 6.32 -39.47 -0.25 -0.91 16 11 Cl -0.08 -0.83 28.95 -51.86 -1.50 -2.33 16 12 C -0.09 -1.08 9.82 -39.57 -0.39 -1.47 16 13 C -0.11 -1.56 8.66 -39.40 -0.34 -1.90 16 14 N -0.51 -10.43 4.44 -237.73 -1.06 -11.49 16 15 C 0.04 0.66 9.10 60.07 0.55 1.21 16 16 C 0.16 3.84 2.30 -4.98 -0.01 3.83 16 17 C -0.50 -14.61 9.09 -34.44 -0.31 -14.92 16 18 H 0.08 2.49 7.34 -52.49 -0.39 2.10 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 21 Si 0.87 22.39 27.47 -169.99 -4.67 17.72 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 25 H 0.07 0.91 7.06 -51.93 -0.37 0.54 16 26 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 27 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.41 3.19 8.82 -40.82 -0.36 2.83 16 29 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.15 2.41 6.35 -52.49 -0.33 2.08 16 33 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 34 H 0.08 1.71 6.91 -51.93 -0.36 1.35 16 35 H 0.02 0.29 7.09 -51.93 -0.37 -0.08 16 36 H 0.05 1.31 4.96 -51.93 -0.26 1.05 16 37 H -0.02 -0.42 6.26 -51.93 -0.33 -0.74 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -34.39 325.22 -8.43 -42.82 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.77 Total: 0.96 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.11 Total: -6.83 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.34 Total: -47.19 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.39 -8.43 -42.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.016 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds