Wall clock time and date at job start Tue Mar 31 2020 08:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47544 * 2 1 4 4 C 1.50704 * 109.47440 * 120.00477 * 2 1 3 5 5 O 1.21288 * 120.00306 * 105.61517 * 4 2 1 6 6 N 1.34773 * 119.99535 * 285.62273 * 4 2 1 7 7 C 1.39980 * 119.99681 * 184.24783 * 6 4 2 8 8 C 1.38848 * 120.07371 * 331.04939 * 7 6 4 9 9 C 1.38119 * 119.93890 * 180.30280 * 8 7 6 10 10 C 1.38295 * 120.09598 * 359.44432 * 9 8 7 11 11 C 1.38263 * 120.14567 * 0.55642 * 10 9 8 12 12 C 1.38228 * 120.05727 * 359.72181 * 11 10 9 13 13 Cl 1.73598 * 120.04661 * 180.02562 * 12 11 10 14 14 N 1.46906 * 109.46951 * 240.00046 * 2 1 3 15 15 C 1.46902 * 110.99661 * 75.85305 * 14 2 1 16 16 C 1.46892 * 111.00108 * 311.90063 * 14 2 1 17 17 C 1.50697 * 109.47438 * 190.00053 * 16 14 2 18 18 H 1.08002 * 119.99531 * 359.97438 * 17 16 14 19 19 C 1.37876 * 120.00183 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00096 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99772 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.47175 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46777 * 120.00222 * 21 19 17 24 24 H 1.48506 * 109.46726 * 239.99551 * 21 19 17 25 25 H 1.08998 * 109.47544 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46836 * 299.99988 * 1 2 3 27 27 H 1.08999 * 109.47082 * 59.99586 * 1 2 3 28 28 H 0.96999 * 120.00664 * 4.24440 * 6 4 2 29 29 H 1.07998 * 120.02955 * 0.02562 * 8 7 6 30 30 H 1.08013 * 119.95126 * 179.72278 * 9 8 7 31 31 H 1.07992 * 119.92789 * 180.28459 * 10 9 8 32 32 H 1.07997 * 119.97002 * 179.74884 * 11 10 9 33 33 H 1.09002 * 109.47120 * 60.88950 * 15 14 2 34 34 H 1.09000 * 109.46922 * 180.88514 * 15 14 2 35 35 H 1.08994 * 109.47107 * 300.88822 * 15 14 2 36 36 H 1.09001 * 109.47025 * 309.99857 * 16 14 2 37 37 H 1.09003 * 109.47087 * 69.99557 * 16 14 2 38 38 H 0.97004 * 120.00339 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5011 -1.8253 1.1381 6 7 1.9607 -0.1071 2.4334 7 6 2.5075 -0.7290 3.5620 8 6 2.5722 -2.1143 3.6302 9 6 3.1066 -2.7252 4.7478 10 6 3.5876 -1.9588 5.7937 11 6 3.5250 -0.5791 5.7297 12 6 2.9862 0.0386 4.6167 13 17 2.9083 1.7710 4.5364 14 7 2.0196 -0.6925 -1.1995 15 6 1.8790 0.1552 -2.3910 16 6 1.3316 -1.9773 -1.3834 17 6 2.0205 -2.7655 -2.4673 18 1 2.8830 -2.3530 -2.9698 19 6 1.5492 -4.0127 -2.8184 20 7 0.4987 -4.5147 -2.2070 21 14 2.4028 -4.9894 -4.1627 22 1 3.5506 -4.2082 -4.6892 23 1 2.8929 -6.2754 -3.6048 24 1 1.4430 -5.2609 -5.2628 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.5302 0.7581 2.5172 29 1 2.2010 -2.7137 2.8121 30 1 3.1530 -3.8029 4.8030 31 1 4.0091 -2.4392 6.6643 32 1 3.8978 0.0165 6.5499 33 1 2.4682 1.0632 -2.2625 34 1 2.2343 -0.3875 -3.2670 35 1 0.8303 0.4189 -2.5276 36 1 1.3593 -2.5409 -0.4508 37 1 0.2950 -1.7968 -1.6682 38 1 0.1668 -5.3921 -2.4542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:13 Heat of formation + Delta-G solvation = 0.659907 kcal Electronic energy + Delta-G solvation = -21707.399269 eV Core-core repulsion = 18383.266032 eV Total energy + Delta-G solvation = -3324.133237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 5.46 seconds Orbital eigenvalues (eV) -40.55269 -38.74195 -36.64766 -36.47331 -34.60096 -32.62792 -30.84176 -30.65337 -29.05599 -27.21342 -25.29014 -24.03957 -23.03004 -22.36962 -20.83612 -19.32159 -17.84964 -16.87221 -16.52356 -16.34432 -15.40804 -14.81944 -14.55384 -14.46899 -14.14906 -14.02325 -13.70479 -13.57560 -13.30617 -12.75985 -12.25911 -12.16775 -12.00319 -11.81150 -11.64384 -11.53670 -11.32498 -11.07232 -10.99246 -10.83424 -10.53639 -10.51147 -10.24359 -9.82869 -9.36750 -8.94935 -8.79482 -8.32486 -8.08847 -7.25432 -5.94290 -3.93128 1.07710 1.26541 1.99138 2.91132 3.07603 3.35927 3.43199 3.48254 3.68967 4.48870 4.70943 4.81895 4.93028 5.01016 5.19884 5.35516 5.36450 5.41262 5.43689 5.45041 5.80781 5.84234 5.93766 6.06952 6.14281 6.15803 6.27815 6.39069 6.46435 6.52565 6.70461 6.93093 7.29962 7.36391 7.49490 7.85628 8.18510 8.21414 8.44474 8.61485 9.12902 9.69005 11.17145 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.004166 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.696571 B = 6719.191185 C = 7680.317497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 H 0.092 0.908 4 C 0.518 3.482 5 O -0.472 6.472 6 N -0.679 5.679 7 C 0.173 3.827 8 C -0.120 4.120 9 C -0.092 4.092 10 C -0.135 4.135 11 C -0.093 4.093 12 C -0.075 4.075 13 Cl -0.074 7.074 14 N -0.521 5.521 15 C 0.036 3.964 16 C 0.186 3.814 17 C -0.500 4.500 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.408 0.592 29 H 0.161 0.839 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.015 0.985 36 H 0.053 0.947 37 H -0.009 1.009 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.804 11.525 15.225 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.045 4.045 3 H 0.110 0.890 4 C 0.305 3.695 5 O -0.341 6.341 6 N -0.325 5.325 7 C 0.076 3.924 8 C -0.140 4.140 9 C -0.111 4.111 10 C -0.155 4.155 11 C -0.113 4.113 12 C -0.105 4.105 13 Cl -0.045 7.045 14 N -0.245 5.245 15 C -0.112 4.112 16 C 0.061 3.939 17 C -0.538 4.538 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.213 1.213 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.244 0.756 29 H 0.178 0.822 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.009 0.991 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.524 10.612 15.069 18.602 hybrid contribution -0.667 0.229 -0.729 1.014 sum 1.857 10.841 14.339 18.071 Atomic orbital electron populations 1.22395 0.95478 1.04140 1.01975 1.21517 0.94067 0.97742 0.91131 0.89030 1.21047 0.78160 0.86850 0.83468 1.90718 1.40695 1.17963 1.84756 1.43780 1.58505 1.23901 1.06325 1.17605 0.96394 0.91868 0.86556 1.21702 1.00371 0.92404 0.99569 1.21248 0.96668 1.00556 0.92645 1.21055 1.01991 0.92859 0.99565 1.20803 0.99086 0.94974 0.96401 1.20694 1.07713 0.83904 0.98161 1.98344 1.97290 1.10501 1.98400 1.62132 1.57478 1.05201 0.99729 1.22270 0.98157 0.96128 0.94638 1.19971 0.91270 0.83817 0.98805 1.21169 1.13238 1.01201 1.18235 0.92069 1.24937 0.95207 0.97524 0.96905 1.69964 1.24154 1.17733 1.42112 0.86487 0.79478 0.80091 0.81622 1.19733 1.21073 1.21255 0.90475 0.92794 0.91328 0.75552 0.82150 0.85080 0.85315 0.84980 0.93608 0.90122 0.96635 0.92911 0.99124 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.33 37.16 0.31 -2.50 16 2 C 0.07 1.17 2.70 -68.86 -0.19 0.99 16 3 H 0.09 1.29 7.97 -51.93 -0.41 0.88 16 4 C 0.52 9.33 6.81 -10.99 -0.07 9.26 16 5 O -0.47 -10.60 11.40 5.55 0.06 -10.54 16 6 N -0.68 -9.69 5.14 -9.83 -0.05 -9.74 16 7 C 0.17 2.49 6.40 -83.64 -0.54 1.96 16 8 C -0.12 -1.84 8.75 -39.40 -0.34 -2.18 16 9 C -0.09 -1.14 10.04 -39.60 -0.40 -1.53 16 10 C -0.14 -1.40 10.04 -39.55 -0.40 -1.80 16 11 C -0.09 -0.99 9.82 -39.58 -0.39 -1.38 16 12 C -0.08 -0.93 6.34 -39.32 -0.25 -1.18 16 13 Cl -0.07 -0.80 27.85 -51.86 -1.44 -2.24 16 14 N -0.52 -11.26 4.45 -237.73 -1.06 -12.31 16 15 C 0.04 0.68 9.23 60.07 0.55 1.24 16 16 C 0.19 4.88 3.23 -4.98 -0.02 4.86 16 17 C -0.50 -14.40 8.45 -34.44 -0.29 -14.69 16 18 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 21 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.08 1.44 6.53 -51.93 -0.34 1.10 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.02 6.92 -51.93 -0.36 0.66 16 28 H 0.41 4.67 7.89 -40.82 -0.32 4.35 16 29 H 0.16 2.90 5.77 -52.49 -0.30 2.60 16 30 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.05 0.72 8.10 -51.93 -0.42 0.29 16 34 H 0.08 1.65 6.74 -51.93 -0.35 1.30 16 35 H 0.02 0.27 6.86 -51.93 -0.36 -0.09 16 36 H 0.05 1.53 5.88 -51.93 -0.31 1.23 16 37 H -0.01 -0.24 6.85 -51.93 -0.36 -0.60 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -32.90 325.85 -8.70 -41.60 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.73 Total: 3.10 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.11 Total: -5.47 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.37 Total: -48.56 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.06 Total: -10.54 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.44 Total: -2.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.90 -8.70 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.258 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.46 seconds