Wall clock time and date at job start Tue Mar 31 2020 07:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47193 * 2 1 4 4 C 1.53004 * 109.47629 * 120.00091 * 2 1 3 5 5 N 1.46493 * 109.47329 * 175.07765 * 4 2 1 6 6 C 1.46500 * 120.00085 * 275.39689 * 5 4 2 7 7 C 1.50703 * 109.47324 * 94.87192 * 6 5 4 8 8 H 1.07995 * 119.99847 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99996 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00043 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00082 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47396 * 89.99599 * 11 9 7 13 13 H 1.48505 * 109.47174 * 209.99922 * 11 9 7 14 14 H 1.48503 * 109.46921 * 329.99752 * 11 9 7 15 15 C 1.34784 * 119.99928 * 95.39382 * 5 4 2 16 16 O 1.21512 * 120.00002 * 5.18474 * 15 5 4 17 17 C 1.48114 * 119.99512 * 185.18379 * 15 5 4 18 18 C 1.39353 * 119.70196 * 186.04244 * 17 15 5 19 19 C 1.38518 * 119.07501 * 180.02562 * 18 17 15 20 20 C 1.38773 * 118.48137 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 120.33866 * 179.97438 * 20 19 18 22 22 C 1.38726 * 119.32015 * 0.02562 * 20 19 18 23 23 N 1.31482 * 120.88127 * 359.71806 * 22 20 19 24 24 H 1.09002 * 109.46569 * 300.00300 * 1 2 3 25 25 H 1.09000 * 109.47203 * 59.99977 * 1 2 3 26 26 H 1.08995 * 109.46754 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47180 * 240.00361 * 2 1 3 28 28 H 1.08989 * 109.47107 * 65.94838 * 3 2 1 29 29 H 1.08998 * 109.47065 * 185.94932 * 3 2 1 30 30 H 1.08998 * 109.46854 * 305.94699 * 3 2 1 31 31 H 1.08992 * 109.46641 * 55.07937 * 4 2 1 32 32 H 1.09003 * 109.46721 * 295.07845 * 4 2 1 33 33 H 1.09006 * 109.47262 * 214.86901 * 6 5 4 34 34 H 1.08992 * 109.47158 * 334.86891 * 6 5 4 35 35 H 0.96998 * 120.00164 * 179.97438 * 10 9 7 36 36 H 1.08000 * 120.46178 * 359.97438 * 18 17 15 37 37 H 1.08005 * 120.76074 * 180.02562 * 19 18 17 38 38 H 1.07995 * 119.55548 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5003 -0.8247 1.1914 6 6 4.1281 -1.9276 0.4595 7 6 4.4614 -1.4769 -0.9394 8 1 4.2286 -0.4698 -1.2521 9 6 5.0628 -2.3507 -1.8203 10 7 5.3459 -3.5773 -1.4396 11 14 5.4754 -1.7923 -3.5544 12 1 6.8445 -1.2178 -3.5769 13 1 5.4108 -2.9541 -4.4771 14 1 4.4987 -0.7611 -3.9879 15 6 4.2661 0.0949 1.8114 16 8 3.7483 0.9549 2.4962 17 6 5.7388 0.0571 1.6581 18 6 6.5328 0.9295 2.3999 19 6 7.9087 0.8834 2.2460 20 6 8.4444 -0.0354 1.3546 21 17 10.1621 -0.1341 1.1235 22 6 7.5931 -0.8734 0.6492 23 7 6.2909 -0.8108 0.8192 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.7663 1.9247 0.9383 29 1 3.1248 1.4444 -0.1065 30 1 1.5924 1.9862 -0.8320 31 1 1.6066 -1.7203 1.2943 32 1 1.7506 -0.1590 2.1370 33 1 5.0418 -2.2298 0.9713 34 1 3.4404 -2.7721 0.4150 35 1 5.7686 -4.1921 -2.0594 36 1 6.0818 1.6324 3.0847 37 1 8.5499 1.5467 2.8075 38 1 8.0059 -1.5895 -0.0458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:28 Heat of formation + Delta-G solvation = 1.659554 kcal Electronic energy + Delta-G solvation = -22447.639895 eV Core-core repulsion = 19123.550006 eV Total energy + Delta-G solvation = -3324.089889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26886 -38.60739 -36.47137 -35.94366 -34.02332 -32.24855 -31.99154 -30.77621 -27.40006 -26.70299 -26.04935 -23.76510 -23.18004 -22.63178 -20.04582 -18.99537 -16.93515 -16.73625 -16.48860 -16.01679 -15.26250 -14.73128 -14.59497 -14.21464 -13.95846 -13.81315 -13.33926 -13.09078 -12.87969 -12.29310 -12.28281 -12.00433 -11.82179 -11.69617 -11.50752 -11.28085 -11.10825 -11.02770 -10.75831 -10.63515 -10.44733 -10.27995 -9.90071 -9.58100 -9.50712 -9.46964 -8.67030 -8.56139 -8.22912 -7.65145 -6.00464 -3.96946 0.90111 1.50605 2.15545 3.25050 3.28738 3.36091 3.40101 3.80625 4.29872 4.44269 4.77003 4.93785 5.04514 5.20060 5.35236 5.39671 5.41730 5.48610 5.60700 5.91613 5.97502 6.04855 6.12443 6.14432 6.20271 6.27033 6.31271 6.41082 6.52328 6.72616 6.78416 6.85294 7.03060 7.47920 7.67696 7.91340 8.22952 8.28852 8.34553 8.87410 9.02630 9.60627 11.07878 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.006946 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.955755 B = 4029.976317 C = 5634.749069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.134 4.134 4 C 0.123 3.877 5 N -0.572 5.572 6 C 0.237 3.763 7 C -0.482 4.482 8 H 0.053 0.947 9 C 0.068 3.932 10 N -0.892 5.892 11 Si 0.880 3.120 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.566 3.434 16 O -0.567 6.567 17 C 0.080 3.920 18 C -0.112 4.112 19 C -0.091 4.091 20 C -0.077 4.077 21 Cl -0.069 7.069 22 C 0.109 3.891 23 N -0.355 5.355 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 5.786 5.459 8.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.191 4.191 4 C 0.000 4.000 5 N -0.300 5.300 6 C 0.118 3.882 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.134 4.134 10 N -0.531 5.531 11 Si 0.708 3.292 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.202 1.202 15 C 0.353 3.647 16 O -0.448 6.448 17 C -0.059 4.059 18 C -0.133 4.133 19 C -0.118 4.118 20 C -0.107 4.107 21 Cl -0.040 7.040 22 C -0.051 4.051 23 N -0.065 5.065 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.133 5.444 5.252 7.649 hybrid contribution 1.211 0.750 -0.867 1.667 sum 2.344 6.194 4.385 7.943 Atomic orbital electron populations 1.21759 0.95673 1.01296 1.01139 1.21513 0.94631 0.96933 1.00228 1.21708 1.01256 0.95690 1.00486 1.21462 0.80374 1.00268 0.97901 1.48228 1.05639 1.26938 1.49182 1.19894 0.93862 0.82755 0.91730 1.21185 1.37558 0.97922 0.95526 0.92869 1.24730 0.95978 0.94888 0.97779 1.69915 1.42873 1.04931 1.35428 0.86793 0.78862 0.78165 0.85356 1.20811 1.21381 1.20166 1.17750 0.85140 0.81873 0.79975 1.90673 1.73833 1.38209 1.42100 1.21514 0.95475 0.94259 0.94641 1.22054 0.92568 0.99153 0.99501 1.21329 0.95107 0.97765 0.97565 1.22538 0.85644 1.00957 1.01527 1.98355 1.11730 1.97689 1.96247 1.23185 0.88535 0.96540 0.96842 1.69133 1.10085 1.16186 1.11138 0.93189 0.92998 0.92845 0.89208 0.92968 0.92904 0.93926 0.91178 0.90777 0.91585 0.95607 0.93063 0.83474 0.84033 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 37.16 0.34 -1.59 16 2 C -0.11 -1.95 3.12 -90.61 -0.28 -2.23 16 3 C -0.13 -2.34 8.16 37.16 0.30 -2.04 16 4 C 0.12 2.22 5.01 -4.04 -0.02 2.20 16 5 N -0.57 -11.86 2.28 -176.08 -0.40 -12.26 16 6 C 0.24 5.52 4.78 -5.19 -0.02 5.49 16 7 C -0.48 -12.02 6.81 -34.44 -0.23 -12.25 16 8 H 0.05 1.38 7.72 -52.49 -0.41 0.98 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -23.82 13.29 55.43 0.74 -23.09 16 11 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.57 11.73 6.27 -12.20 -0.08 11.66 16 16 O -0.57 -12.06 15.18 5.36 0.08 -11.98 16 17 C 0.08 1.55 6.57 -83.01 -0.55 1.01 16 18 C -0.11 -1.79 9.63 -39.06 -0.38 -2.17 16 19 C -0.09 -1.28 9.97 -39.28 -0.39 -1.67 16 20 C -0.08 -1.18 6.35 -39.20 -0.25 -1.43 16 21 Cl -0.07 -0.91 28.99 -51.86 -1.50 -2.42 16 22 C 0.11 1.98 10.98 -17.52 -0.19 1.78 16 23 N -0.36 -7.33 4.79 -9.77 -0.05 -7.38 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.77 7.37 -51.93 -0.38 1.38 16 28 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.05 1.06 7.03 -51.93 -0.37 0.69 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 32 H 0.07 1.31 7.21 -51.93 -0.37 0.94 16 33 H 0.07 1.63 5.69 -51.93 -0.30 1.34 16 34 H 0.03 0.64 7.89 -51.93 -0.41 0.23 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.15 2.15 7.65 -52.49 -0.40 1.75 16 37 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.17 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -27.14 331.27 -8.15 -35.28 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.14 Total: 1.00 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.85 Total: 0.39 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.29 Total: -42.73 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.14 -8.15 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.941 kcal (2) G-P(sol) polarization free energy of solvation -27.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds