Wall clock time and date at job start Tue Mar 31 2020 08:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47286 * 2 1 4 4 C 1.46503 * 120.00338 * 270.00524 * 3 2 1 5 5 C 1.50703 * 109.46663 * 269.99851 * 4 3 2 6 6 H 1.07994 * 120.00016 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99483 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99754 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47109 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47318 * 119.99964 * 9 7 5 12 12 H 1.48506 * 109.47172 * 239.99697 * 9 7 5 13 13 C 1.34780 * 119.99800 * 89.99753 * 3 2 1 14 14 O 1.21593 * 119.99753 * 179.97438 * 13 3 2 15 15 N 1.34770 * 120.00152 * 0.02562 * 13 3 2 16 16 C 1.39947 * 120.00389 * 184.47352 * 15 13 3 17 17 C 1.38864 * 120.05790 * 325.27230 * 16 15 13 18 18 C 1.38211 * 119.91884 * 180.02562 * 17 16 15 19 19 Cl 1.73598 * 119.98244 * 180.02562 * 18 17 16 20 20 C 1.38425 * 120.04107 * 359.97438 * 18 17 16 21 21 C 1.38244 * 120.12580 * 0.27553 * 20 18 17 22 22 C 1.38146 * 120.08239 * 359.44926 * 21 20 18 23 23 C 1.50694 * 120.02385 * 180.25250 * 22 21 20 24 24 H 1.09001 * 109.46974 * 299.99599 * 1 2 3 25 25 H 1.08996 * 109.47061 * 59.99761 * 1 2 3 26 26 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46974 * 240.00401 * 2 1 3 28 28 H 1.09002 * 109.47486 * 120.00370 * 2 1 3 29 29 H 1.08996 * 109.46760 * 29.99353 * 4 3 2 30 30 H 1.08998 * 109.47470 * 149.99914 * 4 3 2 31 31 H 0.97009 * 119.99789 * 180.02562 * 8 7 5 32 32 H 0.97008 * 119.99956 * 4.46798 * 15 13 3 33 33 H 1.08003 * 120.04346 * 0.04305 * 17 16 15 34 34 H 1.08000 * 119.93801 * 180.02562 * 20 18 17 35 35 H 1.07993 * 119.95811 * 179.72344 * 21 20 18 36 36 H 1.09005 * 109.47447 * 270.30043 * 23 22 21 37 37 H 1.09006 * 109.47206 * 30.29671 * 23 22 21 38 38 H 1.08996 * 109.47563 * 150.30065 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3493 3.1268 -3.6175 9 14 5.9137 2.0977 -3.4164 10 1 6.6014 1.2423 -2.4159 11 1 5.9217 1.4192 -4.7373 12 1 6.6210 3.3990 -3.5241 13 6 2.2429 2.0165 1.1673 14 8 2.6487 3.1627 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1617 2.0691 3.5446 17 6 3.1399 3.0457 3.6781 18 6 3.2789 3.7231 4.8747 19 17 4.5007 4.9448 5.0432 20 6 2.4438 3.4288 5.9387 21 6 1.4728 2.4533 5.8095 22 6 1.3255 1.7770 4.6139 23 6 0.2629 0.7179 4.4727 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6754 3.5173 -4.4434 32 1 1.7582 0.4466 2.3356 33 1 3.7911 3.2759 2.8477 34 1 2.5536 3.9595 6.8729 35 1 0.8257 2.2228 6.6427 36 1 0.6726 -0.2492 4.7646 37 1 -0.5824 0.9633 5.1156 38 1 -0.0701 0.6733 3.4358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080164481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:40 Heat of formation + Delta-G solvation = -9.676522 kcal Electronic energy + Delta-G solvation = -21699.756055 eV Core-core repulsion = 18375.174597 eV Total energy + Delta-G solvation = -3324.581459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50133 -38.71793 -36.46271 -35.50853 -34.45063 -32.74625 -32.35933 -30.23057 -29.73251 -27.16248 -26.52095 -23.58039 -23.12204 -22.22756 -21.23348 -19.41154 -18.06619 -17.04641 -16.45469 -15.86473 -15.58492 -15.15633 -14.54747 -14.30512 -14.06785 -13.90255 -13.69398 -13.45373 -13.20076 -12.84406 -12.64046 -12.53064 -12.11396 -11.83600 -11.57564 -11.55521 -11.24211 -11.18292 -10.95598 -10.87185 -10.79130 -10.57158 -10.15134 -10.05348 -9.65683 -9.29618 -8.55335 -8.44817 -8.05632 -7.65273 -6.05646 -4.10325 1.17686 1.38605 2.24936 3.11952 3.29388 3.37544 3.41601 3.52928 3.93074 4.31481 4.47413 4.74755 4.87806 5.06819 5.17995 5.24038 5.28891 5.40808 5.46299 5.49761 5.56135 5.66328 5.80836 5.90422 5.92879 6.13005 6.19857 6.35389 6.39525 6.43874 6.55310 6.77440 7.10532 7.31587 7.46609 7.61797 7.91910 8.21024 8.51396 8.90338 9.17405 9.55225 11.02279 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.004845 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.386310 B = 5777.232945 C = 7357.773519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.605 5.605 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.697 3.303 14 O -0.565 6.565 15 N -0.693 5.693 16 C 0.192 3.808 17 C -0.111 4.111 18 C -0.019 4.019 19 Cl -0.074 7.074 20 C -0.135 4.135 21 C -0.092 4.092 22 C -0.121 4.121 23 C -0.112 4.112 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.403 0.597 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -6.569 17.449 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.339 5.339 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.399 3.601 14 O -0.441 6.441 15 N -0.343 5.343 16 C 0.095 3.905 17 C -0.132 4.132 18 C -0.046 4.046 19 Cl -0.045 7.045 20 C -0.155 4.155 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.169 4.169 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.241 0.759 33 H 0.175 0.825 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.025 -5.534 17.109 18.965 hybrid contribution 0.961 -0.466 -0.437 1.154 sum -5.063 -6.000 16.672 18.429 Atomic orbital electron populations 1.22253 0.96600 1.01507 1.02591 1.21381 0.93638 0.84320 1.02453 1.47630 1.66851 1.13262 1.06198 1.19255 0.96296 0.93533 0.76820 1.21480 0.96932 1.31910 1.06247 0.92427 1.24919 0.97830 0.94881 0.96385 1.69941 1.35599 1.33428 1.14349 0.86453 0.84661 0.78087 0.78264 1.19839 1.20984 1.20851 1.15961 0.79245 0.84811 0.80091 1.90905 1.51056 1.16733 1.85390 1.42992 1.73499 1.14268 1.03519 1.17198 0.93537 0.94577 0.85177 1.21360 0.98275 0.96498 0.97064 1.20718 0.94000 0.94430 0.95497 1.98360 1.54251 1.54030 1.97833 1.20902 0.96628 0.99800 0.98191 1.20668 0.98150 0.95677 0.96590 1.19739 0.97560 1.01168 0.93999 1.20713 0.96623 0.96647 1.02912 0.93113 0.91727 0.92024 0.89384 0.92561 0.94734 0.93678 0.92750 0.75925 0.82538 0.85301 0.85133 0.91182 0.91128 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.43 2.46 -180.80 -0.44 -12.88 16 4 C 0.26 6.66 5.16 -5.19 -0.03 6.63 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.70 14.53 8.12 -86.92 -0.71 13.82 16 14 O -0.56 -14.22 13.33 5.28 0.07 -14.15 16 15 N -0.69 -10.97 4.63 -14.23 -0.07 -11.04 16 16 C 0.19 2.97 6.29 -83.69 -0.53 2.45 16 17 C -0.11 -1.90 8.48 -39.36 -0.33 -2.24 16 18 C -0.02 -0.28 6.32 -39.52 -0.25 -0.53 16 19 Cl -0.07 -1.05 28.95 -51.86 -1.50 -2.56 16 20 C -0.14 -1.62 9.83 -39.51 -0.39 -2.01 16 21 C -0.09 -0.99 9.70 -39.61 -0.38 -1.38 16 22 C -0.12 -1.46 5.90 -104.43 -0.62 -2.08 16 23 C -0.11 -0.99 9.47 36.00 0.34 -0.65 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.69 6.30 -51.93 -0.33 0.36 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.40 5.06 5.55 -40.82 -0.23 4.84 16 33 H 0.16 3.20 6.20 -52.48 -0.33 2.87 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.07 0.62 7.17 -51.93 -0.37 0.24 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -32.55 335.46 -9.10 -41.65 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.98 Total: 2.30 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.95 Total: 0.45 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.23 Total: -49.54 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.07 Total: -14.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.55 -9.10 -41.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080164481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.972 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds