Wall clock time and date at job start Tue Mar 31 2020 08:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47383 * 2 1 4 4 C 1.46499 * 120.00138 * 270.00372 * 3 2 1 5 5 C 1.50701 * 109.46918 * 269.99728 * 4 3 2 6 6 H 1.07996 * 120.00283 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00046 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99993 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99864 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46706 * 90.00399 * 9 7 5 11 11 H 1.48498 * 109.47156 * 209.99986 * 9 7 5 12 12 H 1.48498 * 109.47120 * 330.00596 * 9 7 5 13 13 C 1.34781 * 120.00240 * 89.99740 * 3 2 1 14 14 O 1.21278 * 120.00198 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99696 * 0.02562 * 13 3 2 16 16 N 1.46493 * 109.46840 * 180.02562 * 15 13 3 17 17 C 1.39751 * 120.00078 * 180.02562 * 16 15 13 18 18 C 1.38891 * 120.07708 * 359.97438 * 17 16 15 19 19 C 1.38115 * 119.93675 * 180.02562 * 18 17 16 20 20 C 1.38285 * 120.09562 * 0.02562 * 19 18 17 21 21 C 1.38266 * 120.16045 * 0.02562 * 20 19 18 22 22 C 1.38217 * 120.05955 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 120.04475 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47236 * 300.00071 * 1 2 3 25 25 H 1.09001 * 109.46991 * 60.00215 * 1 2 3 26 26 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47236 * 239.99929 * 2 1 3 28 28 H 1.09006 * 109.47430 * 119.99941 * 2 1 3 29 29 H 1.08999 * 109.47021 * 29.99364 * 4 3 2 30 30 H 1.08997 * 109.47782 * 149.99650 * 4 3 2 31 31 H 0.96998 * 120.00229 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47196 * 59.99720 * 15 13 3 33 33 H 1.08998 * 109.46851 * 300.00047 * 15 13 3 34 34 H 0.97001 * 120.00526 * 359.97438 * 16 15 13 35 35 H 1.07998 * 120.02493 * 0.27415 * 18 17 16 36 36 H 1.07999 * 119.94953 * 179.97438 * 19 18 17 37 37 H 1.08008 * 119.92044 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.97326 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 5.3913 2.1834 -3.2573 9 14 3.0131 3.4360 -3.9287 10 1 3.1158 4.8562 -3.5067 11 1 3.4067 3.3139 -5.3553 12 1 1.6135 2.9694 -3.7595 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3089 2.2038 3.5857 17 6 2.1544 1.7644 4.9034 18 6 1.7003 0.4769 5.1591 19 6 1.5482 0.0459 6.4624 20 6 1.8468 0.8943 7.5127 21 6 2.2982 2.1771 7.2627 22 6 2.4528 2.6153 5.9610 23 17 3.0202 4.2258 5.6476 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1410 -1.1385 31 1 5.7176 2.5745 -4.0828 32 1 2.6227 0.4187 2.5299 33 1 0.9444 1.0115 2.5302 34 1 2.6265 3.1030 3.4085 35 1 1.4702 -0.1877 4.3395 36 1 1.1947 -0.9550 6.6614 37 1 1.7264 0.5544 8.5308 38 1 2.5309 2.8371 8.0853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084408607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:29 Heat of formation + Delta-G solvation = -12.912908 kcal Electronic energy + Delta-G solvation = -21210.536400 eV Core-core repulsion = 17885.814601 eV Total energy + Delta-G solvation = -3324.721799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.90098 -39.08054 -36.37813 -35.83067 -35.14757 -32.78652 -30.82448 -30.55212 -30.05114 -28.12705 -26.20076 -23.13354 -23.00327 -22.34478 -21.43314 -18.77296 -17.86498 -17.00792 -16.71684 -16.27671 -15.83971 -15.41195 -15.16699 -14.28983 -14.25122 -13.99629 -13.87682 -13.64274 -13.58251 -13.08719 -12.76899 -12.46513 -12.25032 -12.01496 -11.90054 -11.55704 -11.50240 -11.36221 -11.05780 -10.86211 -10.83525 -10.56501 -10.27706 -10.20750 -9.61803 -9.26243 -8.90964 -8.64120 -7.88941 -7.50499 -6.13750 -4.13361 1.13339 1.41525 2.20657 3.08973 3.15498 3.25666 3.31375 3.33583 3.64283 3.79488 4.34743 4.67126 4.73253 4.85545 5.07665 5.17554 5.19526 5.23565 5.25716 5.34818 5.42684 5.45783 5.61599 5.70422 5.87390 5.98734 6.05328 6.15316 6.30219 6.39443 6.55624 6.64089 6.84416 7.09919 7.20572 7.54043 7.67934 8.07555 8.39151 8.72749 8.89390 9.45731 10.99498 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.003748 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.085730 B = 7468.729177 C = 8305.501746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.217 3.783 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.502 3.498 14 O -0.535 6.535 15 C 0.103 3.897 16 N -0.725 5.725 17 C 0.237 3.763 18 C -0.195 4.195 19 C -0.065 4.065 20 C -0.178 4.178 21 C -0.061 4.061 22 C -0.118 4.118 23 Cl -0.071 7.071 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.416 0.584 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.961 -6.013 18.100 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.318 5.318 4 C 0.096 3.904 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.288 3.712 14 O -0.412 6.412 15 C -0.025 4.025 16 N -0.357 5.357 17 C 0.129 3.871 18 C -0.218 4.218 19 C -0.083 4.083 20 C -0.198 4.198 21 C -0.080 4.080 22 C -0.149 4.149 23 Cl -0.043 7.043 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.257 0.743 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.598 -5.330 17.681 21.292 hybrid contribution -0.217 0.908 -0.837 1.254 sum -10.816 -4.422 16.844 20.500 Atomic orbital electron populations 1.22243 0.96490 1.01833 1.02361 1.21520 0.93588 0.83558 1.03462 1.47892 1.63579 1.13495 1.06800 1.19692 0.97506 0.93396 0.79768 1.21301 0.95243 1.33195 1.07280 0.90726 1.24854 0.95002 0.95747 0.97328 1.69888 1.15122 1.44777 1.23577 0.86853 0.81403 0.81620 0.79822 1.19888 1.20997 1.19069 1.20147 0.78779 0.87087 0.85176 1.90680 1.45728 1.18059 1.86704 1.21224 1.01758 0.93735 0.85810 1.44680 1.72172 1.17866 1.00940 1.17568 0.93121 0.92414 0.83967 1.20645 1.08758 0.94475 0.97892 1.20963 0.96268 0.99221 0.91885 1.20808 1.05909 0.93903 0.99221 1.20798 0.96934 0.96243 0.94042 1.20384 1.12789 0.87840 0.93889 1.98361 1.88069 1.22001 1.95848 0.92947 0.92073 0.91708 0.89310 0.91275 0.94998 0.94521 0.92481 0.89298 0.89464 0.74337 0.85249 0.85674 0.85744 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.10 1.45 5.93 -4.05 -0.02 1.43 16 3 N -0.59 -11.35 2.46 -175.07 -0.43 -11.78 16 4 C 0.22 5.13 4.23 -5.19 -0.02 5.11 16 5 C -0.53 -14.99 9.94 -34.44 -0.34 -15.33 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 9 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.50 9.75 7.74 -10.98 -0.09 9.66 16 14 O -0.53 -12.70 15.25 5.56 0.08 -12.62 16 15 C 0.10 1.45 3.95 -5.20 -0.02 1.43 16 16 N -0.72 -10.90 5.66 -59.78 -0.34 -11.24 16 17 C 0.24 3.13 6.65 -83.73 -0.56 2.57 16 18 C -0.19 -2.11 9.31 -39.38 -0.37 -2.47 16 19 C -0.06 -0.59 10.04 -39.61 -0.40 -0.99 16 20 C -0.18 -1.62 10.04 -39.55 -0.40 -2.02 16 21 C -0.06 -0.64 9.82 -39.58 -0.39 -1.03 16 22 C -0.12 -1.51 6.34 -39.31 -0.25 -1.76 16 23 Cl -0.07 -0.96 27.60 -51.86 -1.43 -2.39 16 24 H 0.05 0.56 7.22 -51.93 -0.38 0.18 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 29 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 30 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.09 1.12 7.21 -51.93 -0.37 0.74 16 33 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 34 H 0.42 7.11 6.11 -40.82 -0.25 6.86 16 35 H 0.13 1.18 6.74 -52.49 -0.35 0.83 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -33.20 332.43 -8.47 -41.67 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.90 Total: 4.27 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.57 Total: -2.95 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.01 Total: -49.63 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.43 Total: -2.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.20 -8.47 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds