Wall clock time and date at job start Tue Mar 31 2020 08:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47383 * 2 1 4 4 C 1.46499 * 120.00138 * 270.00372 * 3 2 1 5 5 C 1.50701 * 109.46918 * 269.99728 * 4 3 2 6 6 H 1.07996 * 120.00283 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00046 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99993 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99864 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46706 * 90.00399 * 9 7 5 11 11 H 1.48498 * 109.47156 * 209.99986 * 9 7 5 12 12 H 1.48498 * 109.47120 * 330.00596 * 9 7 5 13 13 C 1.34781 * 120.00240 * 89.99740 * 3 2 1 14 14 O 1.21278 * 120.00198 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99696 * 0.02562 * 13 3 2 16 16 N 1.46493 * 109.46840 * 180.02562 * 15 13 3 17 17 C 1.39751 * 120.00078 * 180.02562 * 16 15 13 18 18 C 1.38891 * 120.07708 * 359.97438 * 17 16 15 19 19 C 1.38115 * 119.93675 * 180.02562 * 18 17 16 20 20 C 1.38285 * 120.09562 * 0.02562 * 19 18 17 21 21 C 1.38266 * 120.16045 * 0.02562 * 20 19 18 22 22 C 1.38217 * 120.05955 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 120.04475 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47236 * 300.00071 * 1 2 3 25 25 H 1.09001 * 109.46991 * 60.00215 * 1 2 3 26 26 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47236 * 239.99929 * 2 1 3 28 28 H 1.09006 * 109.47430 * 119.99941 * 2 1 3 29 29 H 1.08999 * 109.47021 * 29.99364 * 4 3 2 30 30 H 1.08997 * 109.47782 * 149.99650 * 4 3 2 31 31 H 0.96998 * 120.00229 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.47196 * 59.99720 * 15 13 3 33 33 H 1.08998 * 109.46851 * 300.00047 * 15 13 3 34 34 H 0.97001 * 120.00526 * 359.97438 * 16 15 13 35 35 H 1.07998 * 120.02493 * 0.27415 * 18 17 16 36 36 H 1.07999 * 119.94953 * 179.97438 * 19 18 17 37 37 H 1.08008 * 119.92044 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.97326 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 5.3913 2.1834 -3.2573 9 14 3.0131 3.4360 -3.9287 10 1 3.1158 4.8562 -3.5067 11 1 3.4067 3.3139 -5.3553 12 1 1.6135 2.9694 -3.7595 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3089 2.2038 3.5857 17 6 2.1544 1.7644 4.9034 18 6 1.7003 0.4769 5.1591 19 6 1.5482 0.0459 6.4624 20 6 1.8468 0.8943 7.5127 21 6 2.2982 2.1771 7.2627 22 6 2.4528 2.6153 5.9610 23 17 3.0202 4.2258 5.6476 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1410 -1.1385 31 1 5.7176 2.5745 -4.0828 32 1 2.6227 0.4187 2.5299 33 1 0.9444 1.0115 2.5302 34 1 2.6265 3.1030 3.4085 35 1 1.4702 -0.1877 4.3395 36 1 1.1947 -0.9550 6.6614 37 1 1.7264 0.5544 8.5308 38 1 2.5309 2.8371 8.0853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084408607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:29 Heat of formation + Delta-G solvation = -34.738924 kcal Electronic energy + Delta-G solvation = -21211.482847 eV Core-core repulsion = 17885.814601 eV Total energy + Delta-G solvation = -3325.668246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14559 -40.16884 -37.33259 -37.22685 -36.28242 -34.87040 -32.04810 -31.59764 -31.08071 -29.64146 -27.47958 -24.53727 -24.20769 -23.44591 -22.45268 -20.12595 -19.16720 -18.93174 -17.79150 -17.56758 -16.92193 -16.71528 -16.52824 -15.94185 -15.22807 -15.02387 -14.88802 -14.77751 -14.65902 -14.49835 -14.15872 -13.93782 -13.70742 -13.37333 -13.18381 -12.79041 -12.56841 -12.45857 -12.40585 -12.15606 -12.06957 -11.93811 -11.76854 -11.74635 -11.16743 -10.86313 -10.83725 -9.71936 -9.50958 -8.44373 -8.36509 -6.41846 0.33794 0.60699 1.28932 1.30466 1.34699 1.42653 1.61727 1.96481 2.28392 2.54370 2.85667 2.97975 3.47138 3.86838 4.05642 4.17366 4.22941 4.29925 4.41889 4.46356 4.51004 4.59379 4.63712 4.77668 4.86104 4.97682 4.99817 5.02444 5.19946 5.39664 5.43031 5.44497 5.57484 5.64508 5.85442 6.16312 6.21782 6.50756 6.59792 6.64104 7.15357 7.28564 8.80370 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.003748 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.085730 B = 7468.729177 C = 8305.501746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.236 1.236 13 C 0.491 3.509 14 O -0.590 6.590 15 C 0.119 3.881 16 N -0.743 5.743 17 C 0.211 3.789 18 C -0.197 4.197 19 C -0.060 4.060 20 C -0.170 4.170 21 C -0.069 4.069 22 C -0.139 4.139 23 Cl -0.092 7.092 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.017 0.983 31 H 0.268 0.732 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.402 0.598 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 -8.138 19.556 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.323 5.323 4 C 0.103 3.897 5 C -0.576 4.576 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.280 3.720 14 O -0.471 6.471 15 C -0.008 4.008 16 N -0.375 5.375 17 C 0.106 3.894 18 C -0.220 4.220 19 C -0.079 4.079 20 C -0.190 4.190 21 C -0.088 4.088 22 C -0.170 4.170 23 Cl -0.064 7.064 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.239 0.761 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.446 -7.535 19.181 24.607 hybrid contribution 0.716 1.456 -1.134 1.979 sum -12.730 -6.080 18.047 22.907 Atomic orbital electron populations 1.22174 0.93703 1.03935 1.02156 1.21893 0.95803 0.80637 1.04515 1.47993 1.63469 1.15377 1.05447 1.19320 0.94896 0.93006 0.82452 1.21556 0.97067 1.32196 1.06740 0.95212 1.25843 0.96683 0.97162 0.98978 1.70043 1.17421 1.46473 1.24514 0.85736 0.80572 0.78913 0.77851 1.20451 1.19960 1.15935 1.21126 0.77393 0.86695 0.86827 1.90646 1.48102 1.20710 1.87677 1.21220 1.04069 0.93074 0.82477 1.44727 1.73500 1.17410 1.01877 1.17861 0.94742 0.93686 0.83078 1.20977 1.07963 0.93530 0.99480 1.21402 0.94872 1.00612 0.90990 1.21240 1.03915 0.92957 1.00912 1.21078 0.96901 0.97373 0.93454 1.20683 1.14088 0.87219 0.95025 1.98347 1.88417 1.23573 1.96014 0.91891 0.93572 0.88369 0.90580 0.88034 0.92987 0.96508 0.92255 0.87363 0.86015 0.76050 0.83353 0.82264 0.82768 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.36 16 2 C 0.09 2.44 5.93 86.38 0.51 2.95 16 3 N -0.59 -22.74 2.46 -826.17 -2.03 -24.77 16 4 C 0.23 10.76 4.23 85.63 0.36 11.12 16 5 C -0.54 -31.35 9.94 25.60 0.25 -31.10 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.68 5.47 84.66 0.46 1.14 16 8 N -0.94 -59.77 13.96 21.45 0.30 -59.47 16 9 Si 0.95 44.36 27.47 68.60 1.88 46.25 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 13 C 0.49 19.17 7.74 87.66 0.68 19.84 16 14 O -0.59 -29.27 15.25 -3.02 -0.05 -29.31 16 15 C 0.12 3.16 3.95 85.63 0.34 3.49 16 16 N -0.74 -22.16 5.66 -343.04 -1.94 -24.10 16 17 C 0.21 5.32 6.65 38.21 0.25 5.58 16 18 C -0.20 -3.62 9.31 22.40 0.21 -3.41 16 19 C -0.06 -0.84 10.04 22.25 0.22 -0.62 16 20 C -0.17 -2.48 10.04 22.29 0.22 -2.26 16 21 C -0.07 -1.32 9.82 22.27 0.22 -1.11 16 22 C -0.14 -3.49 6.34 22.44 0.14 -3.35 16 23 Cl -0.09 -2.57 27.60 -2.72 -0.08 -2.64 16 24 H 0.06 1.09 7.22 -2.39 -0.02 1.07 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 28 H 0.10 1.98 6.44 -2.38 -0.02 1.96 16 29 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 30 H 0.02 0.87 6.85 -2.39 -0.02 0.86 16 31 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.11 2.43 7.21 -2.39 -0.02 2.42 16 33 H 0.12 2.36 7.00 -2.39 -0.02 2.34 16 34 H 0.40 14.29 6.11 -92.71 -0.57 13.72 16 35 H 0.15 2.06 6.74 -2.91 -0.02 2.04 16 36 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -77.99 332.43 3.16 -74.83 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.46 Total: 19.29 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 4.62 Total: -0.07 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.67 Total: -108.34 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.64 kcal Total: -77.99 3.16 -74.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.092 kcal (2) G-P(sol) polarization free energy of solvation -77.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds