Wall clock time and date at job start Tue Mar 31 2020 07:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 N 1.46496 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99759 * 89.99861 * 4 3 2 6 6 C 1.50699 * 109.46928 * 90.00349 * 5 4 3 7 7 O 1.21297 * 119.99980 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00037 * 179.97438 * 6 5 4 9 9 C 1.37097 * 119.99944 * 179.97438 * 8 6 5 10 10 H 1.08003 * 120.00055 * 0.02562 * 9 8 6 11 11 C 1.38948 * 119.99682 * 180.02562 * 9 8 6 12 12 N 1.31416 * 120.00213 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99894 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46950 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47074 * 120.00029 * 13 11 9 16 16 H 1.48505 * 109.46997 * 240.00023 * 13 11 9 17 17 C 1.39743 * 120.00263 * 270.00311 * 4 3 2 18 18 C 1.38895 * 120.05586 * 359.72156 * 17 4 3 19 19 C 1.38113 * 119.93492 * 179.71929 * 18 17 4 20 20 C 1.38385 * 120.05798 * 0.55928 * 19 18 17 21 21 Cl 1.73598 * 119.93757 * 179.69891 * 20 19 18 22 22 C 1.38374 * 120.12555 * 359.71940 * 20 19 18 23 23 C 1.38112 * 120.06362 * 359.97438 * 22 20 19 24 24 H 1.08995 * 109.47359 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46453 * 300.00095 * 1 2 3 26 26 H 1.08999 * 109.47518 * 59.99843 * 1 2 3 27 27 H 1.08998 * 109.46534 * 240.00386 * 2 1 3 28 28 H 1.08992 * 109.47166 * 120.00302 * 2 1 3 29 29 H 1.09001 * 109.47328 * 59.99995 * 3 2 1 30 30 H 1.08999 * 109.46987 * 300.00482 * 3 2 1 31 31 H 1.09004 * 109.47073 * 210.00177 * 5 4 3 32 32 H 1.09000 * 109.47212 * 330.00260 * 5 4 3 33 33 H 0.96996 * 119.99844 * 0.02562 * 8 6 5 34 34 H 0.97002 * 120.00016 * 180.02562 * 12 11 9 35 35 H 1.07996 * 120.03637 * 359.97438 * 18 17 4 36 36 H 1.07993 * 119.97149 * 180.25210 * 19 18 17 37 37 H 1.08005 * 119.97068 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.03400 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.4427 -1.2697 6 6 4.4880 2.8635 -1.7046 7 8 4.0938 3.7854 -1.0219 8 7 5.1504 3.1100 -2.8522 9 6 5.3783 4.4027 -3.2481 10 1 5.0273 5.2235 -2.6401 11 6 6.0608 4.6567 -4.4314 12 7 6.4874 3.6580 -5.1714 13 14 6.3719 6.4180 -4.9705 14 1 5.7944 7.3512 -3.9701 15 1 7.8345 6.6513 -5.0794 16 1 5.7337 6.6515 -6.2909 17 6 4.2043 1.4423 1.2093 18 6 3.5116 1.4478 2.4131 19 6 4.2052 1.4417 3.6074 20 6 5.5890 1.4417 3.6053 21 17 6.4577 1.4420 5.1083 22 6 6.2817 1.4420 2.4074 23 6 5.5932 1.4417 1.2101 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 5.1895 0.9288 -1.1399 32 1 3.6475 0.9290 -2.0292 33 1 5.4653 2.3729 -3.3983 34 1 6.9642 3.8354 -5.9973 35 1 2.4316 1.4528 2.4154 36 1 3.6672 1.4420 4.5438 37 1 7.3617 1.4424 2.4087 38 1 6.1343 1.4424 0.2754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111271920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:20 Heat of formation + Delta-G solvation = -18.981895 kcal Electronic energy + Delta-G solvation = -21307.822981 eV Core-core repulsion = 17982.838012 eV Total energy + Delta-G solvation = -3324.984970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -39.74287 -38.12819 -36.71722 -35.78410 -34.01034 -33.20672 -31.33784 -30.92507 -29.50880 -27.85519 -25.39258 -24.22742 -22.51925 -21.76954 -20.68373 -19.22014 -18.02368 -17.59870 -16.16810 -15.88637 -15.76088 -15.01414 -14.62659 -14.34287 -14.16949 -13.82753 -13.67925 -13.57256 -13.23460 -13.15424 -12.64685 -12.09960 -11.96917 -11.84436 -11.62511 -11.56336 -11.50869 -11.22676 -11.16017 -11.03698 -10.72028 -10.43428 -10.38489 -10.28146 -9.60565 -9.57090 -8.85063 -8.47917 -8.03434 -7.01240 -6.47237 -3.88721 1.53263 1.61241 2.43131 3.12140 3.21047 3.24445 3.31954 3.79973 3.94424 4.14609 4.83754 4.90113 4.94118 5.05059 5.07352 5.15278 5.23571 5.37254 5.46060 5.53337 5.62746 5.67541 5.70179 5.76972 5.81501 5.94915 6.02157 6.14020 6.18562 6.22993 6.33645 6.43012 6.53614 6.84477 7.40768 7.49885 7.65883 7.99506 8.53935 9.11917 9.46309 9.97220 10.69585 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.004215 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.123106 B = 6641.385459 C = 8327.825344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.595 5.595 5 C 0.108 3.892 6 C 0.416 3.584 7 O -0.581 6.581 8 N -0.561 5.561 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.024 3.976 12 N -0.900 5.900 13 Si 0.928 3.072 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.244 3.756 18 C -0.191 4.191 19 C -0.063 4.063 20 C -0.102 4.102 21 Cl -0.094 7.094 22 C -0.059 4.059 23 C -0.181 4.181 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 -9.857 11.474 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.003 3.997 4 N -0.300 5.300 5 C -0.019 4.019 6 C 0.201 3.799 7 O -0.465 6.465 8 N -0.198 5.198 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.178 4.178 12 N -0.541 5.541 13 Si 0.755 3.245 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.207 1.207 17 C 0.140 3.860 18 C -0.214 4.214 19 C -0.082 4.082 20 C -0.130 4.130 21 Cl -0.066 7.066 22 C -0.079 4.079 23 C -0.204 4.204 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.048 -9.219 11.687 16.067 hybrid contribution 0.542 0.530 -0.714 1.041 sum -5.506 -8.689 10.973 15.041 Atomic orbital electron populations 1.21697 0.95383 1.01657 1.01989 1.22005 0.95825 0.97837 1.02581 1.21460 0.79152 0.95761 1.03302 1.46122 1.04495 1.77304 1.02122 1.21281 0.98071 0.96661 0.85907 1.20514 0.84810 0.90739 0.83854 1.90547 1.55334 1.45495 1.55154 1.41906 1.49247 1.08930 1.19678 1.19740 1.33563 0.84290 1.05305 0.87948 1.25257 0.96804 0.99627 0.96087 1.69613 1.38533 1.31200 1.14763 0.85818 0.78084 0.82022 0.78552 1.19234 1.20662 1.20707 1.17851 0.91135 0.91137 0.85901 1.20543 0.99709 1.10813 0.90342 1.20660 0.91808 0.97758 0.98006 1.20494 0.92136 1.14192 0.86218 1.98316 1.77179 1.97585 1.33507 1.20719 0.99821 0.97113 0.90223 1.20663 0.92356 1.09071 0.98277 0.92663 0.92670 0.92528 0.91756 0.91697 0.90737 0.90512 0.89112 0.89133 0.77463 0.91845 0.85411 0.85623 0.85446 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.14 -1.49 6.26 -26.73 -0.17 -1.66 16 3 C 0.13 1.67 5.17 -4.04 -0.02 1.65 16 4 N -0.59 -9.24 2.10 -173.11 -0.36 -9.61 16 5 C 0.11 1.78 5.64 -5.19 -0.03 1.75 16 6 C 0.42 9.35 7.85 -10.99 -0.09 9.27 16 7 O -0.58 -15.40 16.01 5.54 0.09 -15.31 16 8 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 9 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 10 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 11 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 12 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 13 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.24 3.84 6.55 -83.77 -0.55 3.29 16 18 C -0.19 -2.66 9.21 -39.38 -0.36 -3.02 16 19 C -0.06 -0.83 9.82 -39.57 -0.39 -1.22 16 20 C -0.10 -1.43 6.32 -39.48 -0.25 -1.68 16 21 Cl -0.09 -1.20 28.95 -51.86 -1.50 -2.70 16 22 C -0.06 -0.86 9.82 -39.58 -0.39 -1.25 16 23 C -0.18 -2.87 9.21 -39.38 -0.36 -3.23 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.95 6.19 -51.93 -0.32 0.63 16 30 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.09 1.34 6.20 -51.93 -0.32 1.02 16 32 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.39 9.04 7.90 -40.82 -0.32 8.71 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.13 1.54 6.14 -52.49 -0.32 1.22 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.13 2.06 6.14 -52.49 -0.32 1.74 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -30.49 338.20 -8.43 -38.92 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.92 Total: 9.53 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.48 Total: -4.81 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.30 Total: -46.47 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.09 Total: -15.31 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.49 -8.43 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111271920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.935 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds