Wall clock time and date at job start Tue Mar 31 2020 07:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47144 * 2 1 4 4 H 1.09000 * 109.46749 * 305.43537 * 3 2 1 5 5 C 1.50704 * 109.46899 * 185.44199 * 3 2 1 6 6 H 1.08000 * 120.00029 * 245.31024 * 5 3 2 7 7 C 1.37885 * 119.99908 * 65.32207 * 5 3 2 8 8 N 1.31511 * 119.99868 * 186.10872 * 7 5 3 9 9 Si 1.86800 * 120.00062 * 6.10001 * 7 5 3 10 10 H 1.48504 * 109.46992 * 270.00687 * 9 7 5 11 11 H 1.48496 * 109.46999 * 30.00245 * 9 7 5 12 12 H 1.48500 * 109.47143 * 150.00329 * 9 7 5 13 13 N 1.46495 * 109.47556 * 65.44099 * 3 2 1 14 14 C 1.34777 * 119.99989 * 275.00105 * 13 3 2 15 15 O 1.21588 * 120.00260 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00050 * 179.97438 * 14 13 3 17 17 C 1.40001 * 120.00178 * 184.81936 * 16 14 13 18 18 C 1.38874 * 120.05276 * 332.22010 * 17 16 14 19 19 C 1.38097 * 119.94086 * 180.02562 * 18 17 16 20 20 C 1.38403 * 120.05609 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.94248 * 180.02562 * 20 19 18 22 22 C 1.38362 * 120.11699 * 0.04006 * 20 19 18 23 23 C 1.38141 * 120.04911 * 359.68317 * 22 20 19 24 24 C 1.50702 * 120.02297 * 180.32130 * 23 22 20 25 25 H 1.09000 * 109.47186 * 300.00263 * 1 2 3 26 26 H 1.09004 * 109.46836 * 60.00634 * 1 2 3 27 27 H 1.08999 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47048 * 239.99199 * 2 1 3 29 29 H 1.09004 * 109.46836 * 119.99365 * 2 1 3 30 30 H 0.97007 * 119.99816 * 354.96181 * 8 7 5 31 31 H 0.97002 * 119.99798 * 94.99759 * 13 3 2 32 32 H 0.97000 * 119.99881 * 4.81017 * 16 14 13 33 33 H 1.08002 * 120.03147 * 0.02562 * 18 17 16 34 34 H 1.08001 * 119.97190 * 179.97438 * 19 18 17 35 35 H 1.07994 * 119.97409 * 179.97438 * 22 20 19 36 36 H 1.09004 * 109.47237 * 270.25099 * 24 23 22 37 37 H 1.08996 * 109.47814 * 30.25113 * 24 23 22 38 38 H 1.09004 * 109.47160 * 150.25229 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9836 -0.8373 5 6 3.5410 1.4445 -0.1348 6 1 4.1554 1.8089 0.6753 7 6 4.1299 0.9815 -1.2923 8 7 5.4382 0.8703 -1.3655 9 14 3.0693 0.5118 -2.7565 10 1 2.7038 -0.9245 -2.6625 11 1 1.8350 1.3374 -2.7588 12 1 3.8258 0.7489 -4.0122 13 7 1.6616 2.0943 1.2562 14 6 0.4452 2.6609 1.3816 15 8 -0.3384 2.6307 0.4523 16 7 0.0968 3.2602 2.5375 17 6 -1.2004 3.7596 2.7039 18 6 -1.9328 4.1749 1.5994 19 6 -3.2120 4.6677 1.7663 20 6 -3.7645 4.7472 3.0328 21 17 -5.3731 5.3665 3.2390 22 6 -3.0369 4.3344 4.1348 23 6 -1.7590 3.8354 3.9726 24 6 -0.9697 3.3791 5.1726 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.9932 1.1822 -0.6335 31 1 2.2865 2.1180 1.9977 32 1 0.7449 3.3453 3.2541 33 1 -1.5022 4.1127 0.6109 34 1 -3.7818 4.9912 0.9078 35 1 -3.4701 4.3978 5.1220 36 1 -0.3993 4.2175 5.5725 37 1 -1.6523 3.0069 5.9365 38 1 -0.2865 2.5829 4.8768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155428528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:11 Heat of formation + Delta-G solvation = -18.098274 kcal Electronic energy + Delta-G solvation = -21603.692398 eV Core-core repulsion = 18278.745745 eV Total energy + Delta-G solvation = -3324.946653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65111 -38.87820 -36.67846 -35.63718 -34.42624 -32.68828 -32.53645 -31.52598 -29.34243 -27.37716 -26.79911 -23.30861 -22.36187 -21.64363 -20.82721 -19.85477 -18.61678 -17.73826 -17.00944 -16.32823 -15.71024 -15.15169 -15.08250 -14.20803 -14.09242 -13.92680 -13.41933 -13.27707 -12.92676 -12.86518 -12.79830 -12.61729 -12.38434 -11.97978 -11.90199 -11.67072 -11.41971 -11.00217 -10.93635 -10.74996 -10.52185 -10.17805 -9.84421 -9.70490 -9.50524 -8.94392 -8.87385 -8.60192 -8.29294 -7.85297 -6.61728 -4.30230 1.10395 1.25429 2.09824 2.93529 3.32435 3.36787 3.42370 3.55608 3.77473 4.36162 4.58718 4.66732 4.74305 5.00256 5.14206 5.16740 5.37216 5.38469 5.48904 5.74204 5.93142 5.98294 6.02035 6.03167 6.17356 6.25079 6.26792 6.46115 6.60358 6.71451 6.80803 6.93144 6.98319 7.08259 7.29953 7.38785 7.65741 8.17017 8.47969 8.65183 8.97946 9.40653 10.79031 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.003519 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.553113 B = 7955.752605 C = 8424.007893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.258 3.742 4 H 0.051 0.949 5 C -0.611 4.611 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.903 5.903 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.709 5.709 14 C 0.693 3.307 15 O -0.574 6.574 16 N -0.690 5.690 17 C 0.187 3.813 18 C -0.118 4.118 19 C -0.094 4.094 20 C -0.059 4.059 21 Cl -0.084 7.084 22 C -0.091 4.091 23 C -0.117 4.117 24 C -0.112 4.112 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.269 0.731 31 H 0.390 0.610 32 H 0.405 0.595 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 6.344 12.205 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.154 3.846 4 H 0.069 0.931 5 C -0.649 4.649 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.537 5.537 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.360 5.360 14 C 0.394 3.606 15 O -0.453 6.453 16 N -0.336 5.336 17 C 0.089 3.911 18 C -0.138 4.138 19 C -0.114 4.114 20 C -0.087 4.087 21 Cl -0.055 7.055 22 C -0.111 4.111 23 C -0.121 4.121 24 C -0.169 4.169 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.223 0.777 32 H 0.240 0.760 33 H 0.183 0.817 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.638 5.643 9.768 19.282 hybrid contribution 0.484 0.677 2.413 2.552 sum -15.154 6.319 12.181 20.444 Atomic orbital electron populations 1.21877 0.97023 0.98958 1.02218 1.22273 0.94126 0.99904 1.01354 1.19206 0.95762 0.88284 0.81342 0.93136 1.22159 0.89601 1.48782 1.04378 0.92009 1.25705 0.97479 0.93619 1.00122 1.70838 1.04245 1.42438 1.36144 0.83953 0.75339 0.77232 0.75804 1.20662 1.19762 1.21355 1.45578 1.13168 1.58273 1.18979 1.16119 0.83626 0.78653 0.82200 1.90822 1.51136 1.64653 1.38650 1.42866 1.11762 1.60834 1.18170 1.17506 0.84987 0.95297 0.93268 1.21728 0.93969 0.97354 1.00798 1.20988 0.95473 0.99392 0.95501 1.20809 0.87259 1.05452 0.95173 1.98344 1.23154 1.86265 1.97721 1.20592 0.93235 0.99378 0.97868 1.19505 0.94823 1.03811 0.93958 1.20709 0.99818 1.01263 0.95110 0.93167 0.92808 0.95044 0.92161 0.92773 0.92111 0.77689 0.75993 0.81718 0.84950 0.85040 0.91010 0.91015 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.52 37.16 0.32 -2.50 16 2 C -0.14 -2.95 5.20 -26.73 -0.14 -3.09 16 3 C 0.26 5.87 1.81 -69.08 -0.13 5.74 16 4 H 0.05 1.27 6.06 -51.93 -0.31 0.96 16 5 C -0.61 -15.93 9.09 -34.44 -0.31 -16.25 16 6 H 0.06 1.68 7.95 -52.49 -0.42 1.26 16 7 C 0.04 1.01 5.43 -17.82 -0.10 0.92 16 8 N -0.90 -26.51 13.70 55.43 0.76 -25.75 16 9 Si 1.05 24.83 25.36 -169.99 -4.31 20.52 16 10 H -0.28 -6.29 6.76 56.52 0.38 -5.91 16 11 H -0.27 -6.21 6.36 56.52 0.36 -5.85 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.71 -13.32 5.03 -59.82 -0.30 -13.62 16 14 C 0.69 12.35 7.04 -86.92 -0.61 11.74 16 15 O -0.57 -11.78 10.49 5.29 0.06 -11.72 16 16 N -0.69 -9.45 4.91 -14.22 -0.07 -9.52 16 17 C 0.19 2.55 6.41 -83.67 -0.54 2.01 16 18 C -0.12 -1.72 8.77 -39.40 -0.35 -2.07 16 19 C -0.09 -1.19 9.82 -39.57 -0.39 -1.58 16 20 C -0.06 -0.70 6.32 -39.47 -0.25 -0.95 16 21 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.39 16 22 C -0.09 -0.99 9.48 -39.57 -0.38 -1.37 16 23 C -0.12 -1.32 5.90 -104.44 -0.62 -1.93 16 24 C -0.11 -0.93 9.45 36.01 0.34 -0.59 16 25 H 0.05 0.99 5.63 -51.93 -0.29 0.69 16 26 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.35 4.43 -51.93 -0.23 1.12 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.27 7.79 8.72 -40.82 -0.36 7.43 16 31 H 0.39 6.42 8.54 -40.82 -0.35 6.07 16 32 H 0.40 4.31 7.56 -40.82 -0.31 4.00 16 33 H 0.17 2.76 5.66 -52.49 -0.30 2.46 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.07 0.56 7.05 -51.93 -0.37 0.19 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -29.69 319.99 -8.42 -38.10 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.73 Total: 9.47 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.14 Total: -9.92 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.39 Total: -48.88 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.06 Total: -11.72 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.31 Total: 20.52 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.69 -8.42 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155428528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.004 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds