Wall clock time and date at job start Tue Mar 31 2020 07:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46516 * 2 1 4 4 H 1.09002 * 109.47628 * 305.00369 * 3 2 1 5 5 C 1.50703 * 109.47137 * 184.99735 * 3 2 1 6 6 H 1.07997 * 120.00005 * 240.00480 * 5 3 2 7 7 C 1.37882 * 119.99600 * 60.00322 * 5 3 2 8 8 N 1.31516 * 119.99911 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46938 * 59.99950 * 9 7 5 11 11 H 1.48497 * 109.46886 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47128 * 299.99999 * 9 7 5 13 13 N 1.46501 * 109.47053 * 65.00443 * 3 2 1 14 14 C 1.34787 * 119.99805 * 274.99470 * 13 3 2 15 15 O 1.21583 * 119.99552 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99813 * 179.97438 * 14 13 3 17 17 C 1.39945 * 119.99650 * 174.38061 * 16 14 13 18 18 C 1.38900 * 120.06435 * 335.18358 * 17 16 14 19 19 C 1.38104 * 119.95566 * 179.77036 * 18 17 16 20 20 C 1.38277 * 120.07974 * 0.50850 * 19 18 17 21 21 C 1.38376 * 120.13069 * 359.74330 * 20 19 18 22 22 Cl 1.73605 * 119.98036 * 179.97438 * 21 20 19 23 23 C 1.38256 * 120.04299 * 0.02562 * 21 20 19 24 24 C 1.50700 * 120.04013 * 180.02562 * 23 21 20 25 25 H 1.08997 * 109.47214 * 299.99500 * 1 2 3 26 26 H 1.09011 * 109.46163 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47144 * 60.00255 * 1 2 3 28 28 H 1.08995 * 109.47144 * 119.99745 * 2 1 3 29 29 H 1.08997 * 109.47214 * 240.00500 * 2 1 3 30 30 H 0.96997 * 119.99506 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00836 * 94.99564 * 13 3 2 32 32 H 0.96995 * 120.00434 * 354.38735 * 16 14 13 33 33 H 1.07996 * 120.01937 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.95904 * 180.25229 * 19 18 17 35 35 H 1.08004 * 119.93505 * 179.72231 * 20 19 18 36 36 H 1.09000 * 109.46907 * 269.97563 * 24 23 21 37 37 H 1.08995 * 109.47393 * 29.97729 * 24 23 21 38 38 H 1.09000 * 109.46858 * 149.97985 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1470 1.8891 0.6524 7 6 4.1433 0.8787 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8817 -1.3818 10 1 6.5975 0.1478 -0.2349 11 1 6.3978 0.2172 -2.6504 12 1 6.4993 2.2820 -1.3821 13 7 1.6524 2.0974 1.2519 14 6 0.4349 2.6643 1.3670 15 8 -0.3417 2.6317 0.4321 16 7 0.0782 3.2664 2.5189 17 6 -1.1366 3.9563 2.6007 18 6 -1.7237 4.4703 1.4516 19 6 -2.9249 5.1467 1.5343 20 6 -3.5386 5.3219 2.7610 21 6 -2.9542 4.8158 3.9086 22 17 -3.7277 5.0386 5.4468 23 6 -1.7541 4.1337 3.8313 24 6 -1.1180 3.5821 5.0811 25 1 -0.3633 0.5137 0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.8294 -0.0615 -2.9494 31 1 2.2718 2.1232 1.9979 32 1 0.6634 3.2216 3.2911 33 1 -1.2432 4.3375 0.4936 34 1 -3.3835 5.5428 0.6403 35 1 -4.4758 5.8551 2.8235 36 1 -0.4542 4.3316 5.5122 37 1 -1.8947 3.3269 5.8020 38 1 -0.5448 2.6887 4.8331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155433285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:18 Heat of formation + Delta-G solvation = -16.981965 kcal Electronic energy + Delta-G solvation = -21577.761735 eV Core-core repulsion = 18252.863489 eV Total energy + Delta-G solvation = -3324.898246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51918 -38.74613 -36.59217 -35.43180 -34.41590 -32.55333 -32.39771 -30.97037 -29.28796 -27.15253 -26.64599 -23.48060 -22.69405 -21.49898 -20.60550 -19.60315 -18.30271 -17.64783 -16.20677 -15.84726 -15.61214 -15.08025 -14.87687 -14.39335 -14.27878 -14.00348 -13.45247 -13.30615 -12.70241 -12.60063 -12.54504 -12.46110 -11.76260 -11.60827 -11.56814 -11.45959 -11.28779 -11.02434 -10.86957 -10.84367 -10.36261 -10.24884 -10.17367 -9.64125 -9.39799 -9.09605 -8.60690 -8.55447 -8.07521 -7.74160 -6.17158 -4.26928 1.22912 1.30496 2.04346 3.10324 3.22461 3.28352 3.30132 3.49736 3.94690 4.28040 4.69705 4.82876 4.87044 5.06333 5.14606 5.38440 5.47444 5.49015 5.59415 5.68147 5.99140 6.19556 6.31030 6.37150 6.42682 6.44632 6.57621 6.64283 6.95558 7.04328 7.10785 7.28551 7.31549 7.38873 7.59328 7.80466 7.90641 8.13318 8.65308 8.76426 9.14281 9.40938 10.88103 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.003301 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.295504 B = 8480.089164 C = 8704.384709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.572 6.572 16 N -0.690 5.690 17 C 0.199 3.801 18 C -0.125 4.125 19 C -0.091 4.091 20 C -0.140 4.140 21 C -0.015 4.015 22 Cl -0.077 7.077 23 C -0.125 4.125 24 C -0.116 4.116 25 H 0.038 0.962 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.100 0.900 30 H 0.266 0.734 31 H 0.386 0.614 32 H 0.403 0.597 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.641 7.716 12.662 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.367 5.367 14 C 0.393 3.607 15 O -0.449 6.449 16 N -0.337 5.337 17 C 0.101 3.899 18 C -0.146 4.146 19 C -0.110 4.110 20 C -0.160 4.160 21 C -0.042 4.042 22 Cl -0.048 7.048 23 C -0.129 4.129 24 C -0.173 4.173 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.218 0.782 32 H 0.239 0.761 33 H 0.175 0.825 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.255 7.512 11.659 17.249 hybrid contribution 1.461 -0.088 0.793 1.665 sum -8.794 7.424 12.451 16.955 Atomic orbital electron populations 1.21822 0.98238 0.97998 1.01266 1.21966 0.92700 0.99822 1.02304 1.18750 0.94066 0.88919 0.79778 0.93116 1.21172 0.90578 1.39359 1.06405 0.92123 1.24872 0.98654 0.94727 0.95330 1.69881 1.35274 1.37325 1.09335 0.86497 0.84727 0.78327 0.77489 1.20165 1.21100 1.20173 1.45887 1.12870 1.58516 1.19387 1.16109 0.83691 0.78739 0.82190 1.90859 1.51531 1.64174 1.38355 1.42934 1.20177 1.55467 1.15098 1.17231 0.86671 0.93117 0.92877 1.21707 0.96543 0.96574 0.99737 1.20998 0.95040 0.98043 0.96921 1.20905 1.01179 1.02805 0.91111 1.20383 0.94530 1.02717 0.86566 1.98337 1.80641 1.95851 1.29938 1.19285 0.95099 1.03483 0.95015 1.20754 1.01200 1.00766 0.94538 0.94338 0.95937 0.93095 0.95068 0.88189 0.92422 0.78164 0.76136 0.82461 0.85028 0.85380 0.90934 0.90648 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.91 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.04 11.29 55.43 0.63 -23.42 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.72 -13.98 5.03 -59.81 -0.30 -14.28 16 14 C 0.69 13.06 6.93 -86.91 -0.60 12.45 16 15 O -0.57 -12.54 10.64 5.29 0.06 -12.49 16 16 N -0.69 -10.13 4.99 -14.23 -0.07 -10.20 16 17 C 0.20 2.92 6.41 -83.69 -0.54 2.38 16 18 C -0.12 -1.91 8.72 -39.39 -0.34 -2.25 16 19 C -0.09 -1.14 10.04 -39.62 -0.40 -1.54 16 20 C -0.14 -1.63 9.83 -39.52 -0.39 -2.02 16 21 C -0.01 -0.18 6.31 -39.52 -0.25 -0.43 16 22 Cl -0.08 -0.81 27.29 -51.86 -1.42 -2.23 16 23 C -0.12 -1.58 5.90 -104.40 -0.62 -2.19 16 24 C -0.12 -1.16 9.05 36.01 0.33 -0.84 16 25 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 26 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 6.46 8.56 -40.82 -0.35 6.11 16 32 H 0.40 4.64 7.41 -40.82 -0.30 4.34 16 33 H 0.16 2.77 5.79 -52.49 -0.30 2.47 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 38 H 0.07 0.65 6.98 -51.93 -0.36 0.29 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -28.56 322.75 -9.18 -37.74 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.73 Total: 10.78 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -3.19 Total: -5.85 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.25 Total: -47.90 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.42 Total: -2.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.56 -9.18 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155433285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.762 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds