Wall clock time and date at job start Tue Mar 31 2020 07:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46916 * 2 1 4 4 H 1.09000 * 109.47161 * 304.99864 * 3 2 1 5 5 C 1.50703 * 109.46791 * 185.00004 * 3 2 1 6 6 H 1.08002 * 120.00017 * 239.99402 * 5 3 2 7 7 C 1.37876 * 120.00154 * 60.00397 * 5 3 2 8 8 N 1.31520 * 119.99863 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00317 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47182 * 59.99457 * 9 7 5 11 11 H 1.48494 * 109.47299 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46804 * 299.99645 * 9 7 5 13 13 N 1.46501 * 109.47202 * 65.00351 * 3 2 1 14 14 C 1.34774 * 119.99673 * 274.99642 * 13 3 2 15 15 O 1.21590 * 120.00304 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99900 * 179.97438 * 14 13 3 17 17 C 1.40009 * 120.00107 * 174.37404 * 16 14 13 18 18 C 1.38836 * 120.07182 * 335.20580 * 17 16 14 19 19 C 1.38126 * 119.94380 * 180.02562 * 18 17 16 20 20 C 1.38297 * 120.08787 * 359.97438 * 19 18 17 21 21 C 1.38253 * 120.14562 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.96950 * 179.97438 * 21 20 19 23 23 C 1.38222 * 120.06323 * 359.77271 * 21 20 19 24 24 Cl 1.73597 * 120.05157 * 180.27633 * 23 21 20 25 25 H 1.08994 * 109.47160 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47398 * 59.99422 * 1 2 3 27 27 H 1.09004 * 109.47458 * 299.99886 * 1 2 3 28 28 H 1.08996 * 109.47191 * 119.99847 * 2 1 3 29 29 H 1.08996 * 109.47151 * 240.00118 * 2 1 3 30 30 H 0.96999 * 119.99759 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00316 * 94.99661 * 13 3 2 32 32 H 0.97002 * 120.00075 * 354.37324 * 16 14 13 33 33 H 1.08006 * 120.03075 * 359.97438 * 18 17 16 34 34 H 1.07996 * 119.95567 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.92248 * 179.97438 * 20 19 18 36 36 H 1.09007 * 109.46495 * 89.99978 * 22 21 20 37 37 H 1.08994 * 109.47894 * 210.00359 * 22 21 20 38 38 H 1.09001 * 109.47356 * 330.00819 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1474 -0.2350 11 1 6.3978 0.2168 -2.6504 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3416 2.6319 0.4321 16 7 0.0784 3.2665 2.5188 17 6 -1.1368 3.9570 2.6006 18 6 -1.7239 4.4705 1.4521 19 6 -2.9226 5.1517 1.5360 20 6 -3.5388 5.3223 2.7623 21 6 -2.9579 4.8115 3.9082 22 6 -3.6325 5.0002 5.2425 23 6 -1.7612 4.1243 3.8307 24 17 -1.0357 3.4769 5.2688 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0617 -2.9496 31 1 2.2719 2.1232 1.9978 32 1 0.6636 3.2215 3.2911 33 1 -1.2434 4.3382 0.4939 34 1 -3.3796 5.5509 0.6426 35 1 -4.4757 5.8557 2.8248 36 1 -4.3064 4.1642 5.4303 37 1 -2.8784 5.0427 6.0283 38 1 -4.2011 5.9302 5.2340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156141421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:47 Heat of formation + Delta-G solvation = -18.377444 kcal Electronic energy + Delta-G solvation = -21578.940974 eV Core-core repulsion = 18253.982215 eV Total energy + Delta-G solvation = -3324.958759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41577 -38.76542 -36.47245 -35.64985 -34.35108 -32.68927 -32.11795 -30.96058 -29.29746 -27.04170 -26.75052 -23.35390 -22.39573 -22.20276 -20.27085 -19.56730 -18.28795 -17.29382 -16.48622 -15.98967 -15.62186 -15.07729 -14.75019 -14.39585 -14.20244 -13.96105 -13.49341 -13.19640 -12.79540 -12.67518 -12.43987 -12.19477 -11.98255 -11.61260 -11.47111 -11.44294 -11.27162 -11.00495 -10.86083 -10.81812 -10.34493 -10.23956 -10.18159 -9.61931 -9.37587 -9.07379 -8.60029 -8.53431 -8.05694 -7.72349 -6.15246 -4.24859 1.19568 1.35604 2.10830 3.07094 3.24016 3.29634 3.31477 3.52194 3.95330 4.29709 4.68051 4.82547 4.86048 5.16360 5.17947 5.32947 5.44048 5.47209 5.54451 5.73944 5.97544 6.22964 6.29301 6.39486 6.46500 6.53082 6.60639 6.66665 6.96901 7.05064 7.11087 7.30265 7.33949 7.41125 7.61457 7.82537 7.92619 8.15340 8.67556 8.78434 9.16379 9.42913 10.90022 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.003680 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.430813 B = 7606.181354 C = 7959.967758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.694 3.306 15 O -0.572 6.572 16 N -0.691 5.691 17 C 0.203 3.797 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.144 4.144 21 C -0.058 4.058 22 C -0.115 4.115 23 C -0.085 4.085 24 Cl -0.073 7.073 25 H 0.021 0.979 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.404 0.596 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 8.351 12.753 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.394 3.606 15 O -0.450 6.450 16 N -0.337 5.337 17 C 0.105 3.895 18 C -0.150 4.150 19 C -0.107 4.107 20 C -0.164 4.164 21 C -0.059 4.059 22 C -0.172 4.172 23 C -0.115 4.115 24 Cl -0.044 7.044 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.219 0.781 32 H 0.240 0.760 33 H 0.178 0.822 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.296 8.069 11.742 18.182 hybrid contribution 1.676 -0.217 0.792 1.867 sum -9.620 7.851 12.534 17.644 Atomic orbital electron populations 1.21819 0.98239 0.97991 1.01268 1.21965 0.92711 0.99815 1.02304 1.18755 0.94073 0.88933 0.79763 0.93089 1.21177 0.90584 1.39303 1.06392 0.92118 1.24869 0.98641 0.94735 0.95329 1.69885 1.35248 1.37375 1.09335 0.86498 0.84749 0.78321 0.77472 1.20169 1.21106 1.20177 1.45882 1.12867 1.58445 1.19390 1.16076 0.83707 0.78705 0.82086 1.90855 1.51515 1.64248 1.38339 1.42977 1.20133 1.55261 1.15330 1.17323 0.86748 0.93141 0.92338 1.21583 0.96892 0.97415 0.99083 1.21155 0.94798 0.97092 0.97647 1.20868 1.00827 1.03086 0.91569 1.19464 0.92828 0.96979 0.96643 1.20827 1.00605 1.02346 0.93419 1.20461 0.96895 1.07560 0.86565 1.98327 1.82909 1.85334 1.37831 0.95942 0.93095 0.94332 0.95057 0.88183 0.92446 0.78130 0.76027 0.82238 0.85324 0.85561 0.90830 0.91026 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.29 7.03 2.24 -69.08 -0.15 6.88 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 13 N -0.72 -14.50 5.03 -59.81 -0.30 -14.80 16 14 C 0.69 13.62 6.94 -86.92 -0.60 13.02 16 15 O -0.57 -12.81 10.64 5.29 0.06 -12.75 16 16 N -0.69 -10.99 5.20 -14.20 -0.07 -11.07 16 17 C 0.20 3.14 6.43 -83.64 -0.54 2.60 16 18 C -0.13 -2.01 8.72 -39.40 -0.34 -2.35 16 19 C -0.09 -1.10 10.04 -39.60 -0.40 -1.49 16 20 C -0.14 -1.59 9.70 -39.55 -0.38 -1.97 16 21 C -0.06 -0.67 5.88 -104.62 -0.62 -1.29 16 22 C -0.12 -1.00 9.61 36.01 0.35 -0.66 16 23 C -0.08 -1.13 6.33 -39.32 -0.25 -1.38 16 24 Cl -0.07 -0.86 26.13 -51.86 -1.36 -2.22 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.82 8.56 -40.82 -0.35 6.47 16 32 H 0.40 5.48 7.79 -40.82 -0.32 5.16 16 33 H 0.16 2.85 5.79 -52.48 -0.30 2.55 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.62 6.91 -51.93 -0.36 0.26 16 38 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -28.75 323.74 -9.16 -37.91 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -4.81 Total: 11.45 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.16 Total: -5.07 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.25 Total: -49.49 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.06 Total: -12.75 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.36 Total: -2.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.75 -9.16 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156141421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.535 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds