Wall clock time and date at job start Tue Mar 31 2020 08:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47617 * 2 1 4 4 C 1.38926 * 120.00290 * 180.02562 * 3 2 1 5 5 C 1.38944 * 120.16421 * 5.57927 * 4 3 2 6 6 C 1.37950 * 120.08459 * 180.02562 * 5 4 3 7 7 C 1.38712 * 120.40884 * 359.97438 * 6 5 4 8 8 Cl 1.73598 * 119.83670 * 180.02562 * 7 6 5 9 9 C 1.37845 * 120.32450 * 359.76580 * 7 6 5 10 10 C 1.39751 * 119.91031 * 0.48776 * 9 7 6 11 11 C 1.47430 * 120.20055 * 179.76393 * 10 9 7 12 12 O 1.21601 * 120.00202 * 174.12052 * 11 10 9 13 13 N 1.34779 * 120.00120 * 354.11943 * 11 10 9 14 14 C 1.46499 * 120.00459 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.46744 * 325.00147 * 14 13 11 16 16 C 1.52998 * 109.47208 * 84.99638 * 14 13 11 17 17 C 1.50701 * 109.47312 * 205.00198 * 14 13 11 18 18 H 1.07994 * 119.99958 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99495 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00537 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99490 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.46767 * 90.00117 * 21 19 17 23 23 H 1.48500 * 109.47318 * 209.99599 * 21 19 17 24 24 H 1.48493 * 109.47562 * 330.00290 * 21 19 17 25 25 H 1.09005 * 109.46904 * 300.00410 * 1 2 3 26 26 H 1.08998 * 109.47003 * 59.99590 * 1 2 3 27 27 H 1.09002 * 109.47703 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46904 * 239.99590 * 2 1 3 29 29 H 1.08998 * 109.47003 * 120.00410 * 2 1 3 30 30 H 0.97003 * 120.00077 * 359.97438 * 3 2 1 31 31 H 1.08008 * 119.95850 * 0.02605 * 5 4 3 32 32 H 1.08000 * 119.79729 * 180.02562 * 6 5 4 33 33 H 1.07994 * 120.04354 * 180.27993 * 9 7 6 34 34 H 0.97002 * 119.99796 * 0.02562 * 13 11 10 35 35 H 1.09004 * 109.46852 * 60.00576 * 16 14 13 36 36 H 1.08997 * 109.47566 * 300.00821 * 16 14 13 37 37 H 1.08997 * 109.47270 * 180.02562 * 16 14 13 38 38 H 0.97001 * 120.00085 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3843 1.6349 -0.0005 5 6 4.2891 0.5870 -0.1179 6 6 5.6450 0.8409 -0.1177 7 6 6.1161 2.1404 -0.0013 8 17 7.8255 2.4429 -0.0034 9 6 5.2333 3.1932 0.1107 10 6 3.8570 2.9509 0.1174 11 6 2.9073 4.0717 0.2421 12 8 1.7124 3.8703 0.1403 13 7 3.3635 5.3195 0.4688 14 6 2.4199 6.4333 0.5922 15 1 1.5777 6.2722 -0.0809 16 6 1.9125 6.5147 2.0333 17 6 3.1131 7.7215 0.2301 18 1 4.1527 7.7115 -0.0622 19 6 2.4200 8.9126 0.2721 20 7 1.1542 8.9248 0.6285 21 14 3.2795 10.5095 -0.1760 22 1 3.1301 10.7603 -1.6321 23 1 2.6700 11.6300 0.5843 24 1 4.7216 10.4076 0.1633 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3881 2.1185 -0.0004 31 1 3.9304 -0.4276 -0.2093 32 1 6.3442 0.0229 -0.2096 33 1 5.6050 4.2035 0.1965 34 1 4.3167 5.4802 0.5496 35 1 2.7546 6.6757 2.7064 36 1 1.4111 5.5830 2.2952 37 1 1.2101 7.3431 2.1250 38 1 0.6666 9.7628 0.6577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192201731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:17 Heat of formation + Delta-G solvation = -23.659127 kcal Electronic energy + Delta-G solvation = -21384.119624 eV Core-core repulsion = 18058.931834 eV Total energy + Delta-G solvation = -3325.187790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15668 -38.10959 -36.74480 -35.66527 -34.80947 -32.57372 -31.48642 -31.09824 -28.80740 -27.72741 -25.28266 -24.10484 -23.29400 -21.37890 -21.03857 -19.55127 -18.08544 -17.01592 -16.36914 -15.85049 -15.25848 -15.18599 -15.03245 -14.57146 -14.31104 -14.04955 -13.83128 -13.20606 -12.97815 -12.69578 -12.43161 -12.17063 -12.12079 -11.93512 -11.73019 -11.44989 -11.26962 -11.09332 -10.99279 -10.88284 -10.76275 -10.32342 -10.25396 -9.78820 -9.15819 -9.09574 -9.02732 -8.57664 -8.02209 -7.30221 -6.14380 -4.23632 1.00955 1.44866 2.30220 3.23031 3.24630 3.31224 3.33431 3.53863 4.02243 4.09106 4.36571 4.75983 4.87605 4.90047 4.97896 5.18364 5.22401 5.28795 5.37736 5.52391 5.62766 5.79542 5.82659 5.95269 6.00252 6.14549 6.27773 6.59517 6.79510 6.92518 7.11064 7.33278 7.33911 7.52456 7.66719 7.87454 7.99879 8.14172 8.59089 8.74328 9.04537 9.43828 10.91630 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.004693 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.324570 B = 5965.113881 C = 7938.679354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.722 5.722 4 C 0.277 3.723 5 C -0.206 4.206 6 C -0.039 4.039 7 C -0.110 4.110 8 Cl -0.083 7.083 9 C -0.024 4.024 10 C -0.205 4.205 11 C 0.559 3.441 12 O -0.563 6.563 13 N -0.697 5.697 14 C 0.264 3.736 15 H 0.051 0.949 16 C -0.147 4.147 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.884 5.884 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.424 0.576 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.014 0.986 37 H 0.091 0.909 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -17.527 -0.622 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.362 5.362 4 C 0.165 3.835 5 C -0.229 4.229 6 C -0.059 4.059 7 C -0.138 4.138 8 Cl -0.055 7.055 9 C -0.044 4.044 10 C -0.213 4.213 11 C 0.346 3.654 12 O -0.446 6.446 13 N -0.343 5.343 14 C 0.162 3.838 15 H 0.068 0.932 16 C -0.205 4.205 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.275 0.725 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.224 0.776 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.082 -17.581 -0.647 18.312 hybrid contribution 0.915 1.221 -0.178 1.536 sum 5.996 -16.360 -0.825 17.444 Atomic orbital electron populations 1.21948 0.94392 1.02602 1.03249 1.21376 0.95062 0.84088 1.00873 1.45912 1.04256 1.09094 1.76934 1.17863 0.85085 0.91772 0.88773 1.20542 0.91984 0.98271 1.12109 1.20834 0.95155 0.94868 0.95031 1.20351 0.84301 0.94587 1.14599 1.98338 1.13273 1.96296 1.97583 1.21005 0.91025 0.98690 0.93688 1.19563 0.93253 0.92902 1.15608 1.17914 0.87323 0.83066 0.77071 1.90322 1.16611 1.83069 1.54555 1.46444 1.11305 1.07431 1.69149 1.18804 0.88686 0.82040 0.94239 0.93164 1.22076 1.00521 1.00300 0.97624 1.21207 0.97746 0.91115 1.47231 0.92005 1.24873 0.94869 0.99164 0.94699 1.69897 1.08378 1.27105 1.46716 0.86440 0.79628 0.82493 0.78512 1.20535 1.21064 1.19771 0.91731 0.91763 0.91087 0.92297 0.92275 0.72499 0.85027 0.85125 0.84622 0.77630 0.95385 0.96642 0.89060 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.03 37.16 0.37 -1.15 16 2 C 0.11 1.14 5.66 -4.05 -0.02 1.11 16 3 N -0.72 -10.44 5.59 -58.44 -0.33 -10.77 16 4 C 0.28 4.11 6.65 -83.60 -0.56 3.55 16 5 C -0.21 -2.45 9.30 -39.43 -0.37 -2.82 16 6 C -0.04 -0.45 9.81 -39.51 -0.39 -0.83 16 7 C -0.11 -1.42 6.31 -39.55 -0.25 -1.67 16 8 Cl -0.08 -1.00 28.94 -51.86 -1.50 -2.50 16 9 C -0.02 -0.35 9.29 -39.16 -0.36 -0.71 16 10 C -0.20 -3.39 5.89 -104.80 -0.62 -4.01 16 11 C 0.56 11.32 7.71 -12.52 -0.10 11.22 16 12 O -0.56 -12.71 13.30 5.28 0.07 -12.64 16 13 N -0.70 -14.67 5.02 -56.01 -0.28 -14.95 16 14 C 0.26 6.66 2.56 -69.08 -0.18 6.48 16 15 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 17 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -24.67 11.32 55.43 0.63 -24.05 16 21 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.53 7.73 -51.93 -0.40 0.13 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.42 7.21 4.98 -40.95 -0.20 7.01 16 31 H 0.13 1.23 6.72 -52.48 -0.35 0.88 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.86 6.45 -52.49 -0.34 1.52 16 34 H 0.39 7.25 6.60 -40.82 -0.27 6.98 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -29.12 330.59 -8.74 -37.86 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.77 Total: 11.29 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.52 Total: -4.79 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.02 Total: -49.77 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.12 -8.74 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192201731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.198 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds