Wall clock time and date at job start Tue Mar 31 2020 08:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46777 * 2 1 4 4 C 1.38932 * 119.99419 * 180.02562 * 3 2 1 5 5 C 1.38944 * 120.16738 * 5.58634 * 4 3 2 6 6 C 1.37950 * 120.08080 * 180.02562 * 5 4 3 7 7 C 1.38708 * 120.41330 * 359.97438 * 6 5 4 8 8 Cl 1.73595 * 119.84058 * 180.02562 * 7 6 5 9 9 C 1.37854 * 120.31978 * 359.76582 * 7 6 5 10 10 C 1.39742 * 119.91444 * 0.48886 * 9 7 6 11 11 C 1.47426 * 120.20101 * 179.75951 * 10 9 7 12 12 O 1.21604 * 120.00016 * 174.11429 * 11 10 9 13 13 N 1.34780 * 120.00366 * 354.12728 * 11 10 9 14 14 C 1.46496 * 120.00542 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46707 * 34.99247 * 14 13 11 16 16 C 1.52998 * 109.46889 * 274.99650 * 14 13 11 17 17 C 1.50696 * 109.47509 * 154.99337 * 14 13 11 18 18 H 1.08004 * 120.00085 * 0.02562 * 17 14 13 19 19 C 1.37871 * 120.00272 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99849 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00223 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47128 * 59.99757 * 21 19 17 23 23 H 1.48497 * 109.47388 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47033 * 300.00335 * 21 19 17 25 25 H 1.08994 * 109.47172 * 59.99629 * 1 2 3 26 26 H 1.08998 * 109.47194 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47212 * 299.99975 * 1 2 3 28 28 H 1.08997 * 109.46976 * 240.00370 * 2 1 3 29 29 H 1.08994 * 109.47172 * 120.00371 * 2 1 3 30 30 H 0.96998 * 120.00405 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.95752 * 0.02593 * 5 4 3 32 32 H 1.08000 * 119.79589 * 180.02562 * 6 5 4 33 33 H 1.08005 * 120.03823 * 180.27526 * 9 7 6 34 34 H 0.97005 * 119.99584 * 359.97438 * 13 11 10 35 35 H 1.09005 * 109.46869 * 179.97438 * 16 14 13 36 36 H 1.08998 * 109.47137 * 60.00145 * 16 14 13 37 37 H 1.08996 * 109.47461 * 299.99664 * 16 14 13 38 38 H 0.96999 * 119.99668 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3842 1.6351 -0.0005 5 6 4.2891 0.5872 -0.1180 6 6 5.6450 0.8412 -0.1178 7 6 6.1159 2.1407 -0.0013 8 17 7.8253 2.4434 -0.0034 9 6 5.2330 3.1935 0.1109 10 6 3.8568 2.9512 0.1176 11 6 2.9071 4.0718 0.2425 12 8 1.7122 3.8704 0.1406 13 7 3.3631 5.3197 0.4693 14 6 2.4194 6.4334 0.5929 15 1 1.5094 6.0858 1.0819 16 6 2.0778 6.9691 -0.7989 17 6 3.0433 7.5316 1.4148 18 1 4.0430 7.4122 1.8057 19 6 2.3383 8.6893 1.6669 20 7 1.1212 8.8350 1.1905 21 14 3.1119 10.0511 2.6852 22 1 4.3519 10.5240 2.0187 23 1 2.1553 11.1799 2.8105 24 1 3.4435 9.5314 4.0362 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.9304 -0.4273 -0.2096 32 1 6.3442 0.0233 -0.2098 33 1 5.6047 4.2039 0.1969 34 1 4.3163 5.4803 0.5507 35 1 1.3753 7.7975 -0.7069 36 1 1.6265 6.1747 -1.3933 37 1 2.9878 7.3166 -1.2879 38 1 0.6251 9.6494 1.3683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192201737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:23 Heat of formation + Delta-G solvation = -23.591640 kcal Electronic energy + Delta-G solvation = -21381.210861 eV Core-core repulsion = 18056.025998 eV Total energy + Delta-G solvation = -3325.184863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15615 -38.10917 -36.74479 -35.66519 -34.80877 -32.57313 -31.48542 -31.09667 -28.80635 -27.72647 -25.27936 -24.10357 -23.29452 -21.38058 -21.03696 -19.54782 -18.08403 -17.01524 -16.35978 -15.84697 -15.28885 -15.18431 -15.02621 -14.57086 -14.30450 -14.07116 -13.79485 -13.22648 -12.95991 -12.69475 -12.42812 -12.16264 -12.12869 -11.93150 -11.73037 -11.45286 -11.26463 -11.10813 -10.96915 -10.88416 -10.76222 -10.34358 -10.24842 -9.78727 -9.15809 -9.09610 -9.02839 -8.57586 -8.02128 -7.30049 -6.14087 -4.23451 1.00991 1.44851 2.30090 3.23081 3.25856 3.30785 3.32417 3.54000 4.01590 4.09866 4.36575 4.75916 4.87563 4.90285 4.98213 5.18482 5.22634 5.28825 5.37762 5.52489 5.62867 5.79879 5.82556 5.95465 6.00401 6.14583 6.27709 6.59485 6.79742 6.92802 7.11143 7.33351 7.34048 7.52466 7.66775 7.87583 8.00068 8.14431 8.59115 8.74284 9.04535 9.43933 10.91866 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.004670 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.844635 B = 5994.106690 C = 7875.254077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.722 5.722 4 C 0.277 3.723 5 C -0.206 4.206 6 C -0.039 4.039 7 C -0.110 4.110 8 Cl -0.083 7.083 9 C -0.024 4.024 10 C -0.205 4.205 11 C 0.559 3.441 12 O -0.563 6.563 13 N -0.697 5.697 14 C 0.264 3.736 15 H 0.050 0.950 16 C -0.147 4.147 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.884 5.884 21 Si 0.902 3.098 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.424 0.576 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.390 0.610 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.027 0.973 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 -17.120 -3.106 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.362 5.362 4 C 0.165 3.835 5 C -0.229 4.229 6 C -0.059 4.059 7 C -0.138 4.138 8 Cl -0.055 7.055 9 C -0.044 4.044 10 C -0.213 4.213 11 C 0.346 3.654 12 O -0.446 6.446 13 N -0.343 5.343 14 C 0.163 3.837 15 H 0.068 0.932 16 C -0.206 4.206 17 C -0.574 4.574 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.275 0.725 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.224 0.776 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.206 -17.167 -3.167 18.217 hybrid contribution 0.889 1.103 0.557 1.522 sum 6.094 -16.064 -2.610 17.379 Atomic orbital electron populations 1.21947 0.94391 1.02602 1.03252 1.21377 0.95066 0.84083 1.00874 1.45917 1.04254 1.09097 1.76924 1.17866 0.85089 0.91771 0.88767 1.20540 0.91982 0.98271 1.12107 1.20832 0.95156 0.94865 0.95036 1.20350 0.84294 0.94590 1.14609 1.98338 1.13281 1.96292 1.97584 1.21001 0.91023 0.98688 0.93706 1.19560 0.93253 0.92914 1.15585 1.17914 0.87321 0.83012 0.77129 1.90323 1.16603 1.83204 1.54426 1.46445 1.11322 1.07492 1.69066 1.18797 0.89008 0.82117 0.93804 0.93173 1.22081 1.00610 1.00958 0.96909 1.21170 1.01845 1.00921 1.33426 0.92063 1.24872 0.94800 0.98220 0.95694 1.69889 1.10408 1.27459 1.44346 0.86498 0.78980 0.81016 0.80564 1.20095 1.21122 1.20144 0.91783 0.91089 0.91705 0.92305 0.92259 0.72499 0.85025 0.85127 0.84644 0.77633 0.89053 0.96616 0.95381 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.03 37.16 0.37 -1.16 16 2 C 0.11 1.14 5.66 -4.04 -0.02 1.12 16 3 N -0.72 -10.46 5.59 -58.44 -0.33 -10.79 16 4 C 0.28 4.12 6.65 -83.59 -0.56 3.56 16 5 C -0.21 -2.45 9.30 -39.43 -0.37 -2.82 16 6 C -0.04 -0.45 9.81 -39.51 -0.39 -0.83 16 7 C -0.11 -1.42 6.31 -39.55 -0.25 -1.67 16 8 Cl -0.08 -1.00 28.94 -51.86 -1.50 -2.50 16 9 C -0.02 -0.35 9.29 -39.16 -0.36 -0.71 16 10 C -0.20 -3.39 5.89 -104.81 -0.62 -4.01 16 11 C 0.56 11.32 7.71 -12.52 -0.10 11.23 16 12 O -0.56 -12.71 13.30 5.27 0.07 -12.64 16 13 N -0.70 -14.67 5.02 -56.01 -0.28 -14.95 16 14 C 0.26 6.67 2.56 -69.09 -0.18 6.50 16 15 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 16 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 17 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 20 N -0.88 -24.68 11.32 55.43 0.63 -24.05 16 21 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.53 7.73 -51.93 -0.40 0.13 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.42 7.22 4.98 -40.95 -0.20 7.02 16 31 H 0.13 1.23 6.72 -52.49 -0.35 0.88 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.85 6.45 -52.48 -0.34 1.51 16 34 H 0.39 7.24 6.60 -40.82 -0.27 6.97 16 35 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -29.10 330.59 -8.74 -37.84 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.77 Total: 11.33 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.52 Total: -4.80 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.02 Total: -49.79 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.10 -8.74 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192201737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.251 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds