Wall clock time and date at job start Tue Mar 31 2020 07:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47093 * 4.50227 * 3 2 1 5 5 C 1.36880 * 119.99963 * 95.72523 * 4 3 2 6 6 H 1.08002 * 119.99484 * 219.49327 * 5 4 3 7 7 C 1.39046 * 119.99908 * 39.48924 * 5 4 3 8 8 N 1.31361 * 120.00078 * 18.69352 * 7 5 4 9 9 Si 1.86800 * 119.99758 * 198.69522 * 7 5 4 10 10 H 1.48509 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47053 * 119.99709 * 9 7 5 12 12 H 1.48503 * 109.47053 * 240.00030 * 9 7 5 13 13 C 1.34774 * 119.99845 * 275.72648 * 4 3 2 14 14 O 1.21586 * 120.00084 * 4.55586 * 13 4 3 15 15 C 1.47742 * 120.00046 * 184.56165 * 13 4 3 16 16 C 1.39730 * 120.08993 * 22.68666 * 15 13 4 17 17 C 1.38004 * 120.08925 * 179.97438 * 16 15 13 18 18 C 1.38179 * 120.27815 * 0.02562 * 17 16 15 19 19 C 1.39426 * 120.18568 * 359.97438 * 18 17 16 20 20 C 1.48418 * 120.05051 * 180.02562 * 19 18 17 21 21 N 1.33976 * 125.64617 * 359.97438 * 20 19 18 22 22 C 1.30683 * 109.78215 * 179.97438 * 21 20 19 23 23 N 1.34526 * 108.28781 * 0.02562 * 22 21 20 24 24 H 0.96997 * 126.73607 * 180.02562 * 23 22 21 25 25 N 1.31493 * 125.65603 * 179.69218 * 20 19 18 26 26 C 1.39077 * 119.90774 * 359.72071 * 19 18 17 27 27 H 4.40640 * 5.51527 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.46894 * 124.49718 * 3 2 1 29 29 H 1.08998 * 109.47075 * 244.50032 * 3 2 1 30 30 H 0.97001 * 119.99851 * 180.02562 * 8 7 5 31 31 H 1.07998 * 119.95836 * 359.97438 * 16 15 13 32 32 H 1.07990 * 119.86150 * 180.02562 * 17 16 15 33 33 H 1.07993 * 119.90782 * 179.97438 * 18 17 16 34 34 H 1.07996 * 125.85635 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.14425 * 180.29419 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3761 -0.1084 5 6 3.4748 -1.8873 -1.3319 6 1 3.2255 -2.9089 -1.5783 7 6 4.1407 -1.0914 -2.2573 8 7 4.7644 -0.0052 -1.8612 9 14 4.1484 -1.5667 -4.0638 10 1 3.3800 -2.8241 -4.2481 11 1 3.5238 -0.4826 -4.8635 12 1 5.5481 -1.7718 -4.5157 13 6 3.2501 -2.1393 0.9964 14 8 2.8708 -1.7147 2.0708 15 6 3.8372 -3.4917 0.9022 16 6 4.6851 -3.8148 -0.1604 17 6 5.2340 -5.0780 -0.2482 18 6 4.9488 -6.0298 0.7121 19 6 4.1043 -5.7198 1.7773 20 6 3.8005 -6.7442 2.8074 21 7 4.2732 -7.9977 2.8252 22 6 3.8088 -8.6307 3.8699 23 7 3.0161 -7.7880 4.5562 24 1 2.5350 -7.9819 5.3758 25 7 3.0270 -6.5705 3.8565 26 6 3.5520 -4.4473 1.8768 27 1 -1.0498 -0.0005 0.0002 28 1 3.0090 0.5828 -0.8469 29 1 3.0091 0.4432 0.9275 30 1 5.2286 0.5502 -2.5069 31 1 4.9112 -3.0751 -0.9141 32 1 5.8891 -5.3236 -1.0708 33 1 5.3813 -7.0165 0.6373 34 1 4.0244 -9.6548 4.1365 35 1 2.9011 -4.2016 2.7028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367188607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:40 Heat of formation + Delta-G solvation = 152.080360 kcal Electronic energy + Delta-G solvation = -22429.933906 eV Core-core repulsion = 19011.259259 eV Total energy + Delta-G solvation = -3418.674648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.101 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01776 -39.37196 -37.54905 -35.17322 -33.12291 -32.52738 -31.77274 -31.41012 -30.36206 -29.57418 -26.67959 -25.11832 -23.56795 -22.92227 -21.77966 -20.49846 -19.30396 -18.51283 -18.04913 -17.04335 -16.00692 -15.58183 -15.44392 -15.22140 -14.80620 -14.72028 -14.05543 -13.94315 -13.54076 -13.00591 -12.84977 -12.67589 -12.15469 -12.10432 -11.92322 -11.68853 -11.28780 -11.13100 -10.82486 -10.62021 -10.45066 -10.30276 -10.06240 -9.93890 -9.73104 -9.44028 -9.02565 -8.61096 -8.34136 -8.02822 -7.72380 -6.57947 -4.24066 1.20030 1.69485 1.94669 2.60936 3.02727 3.10788 3.15370 3.19325 3.47031 3.72074 3.86743 3.99916 4.03563 4.55009 4.64747 4.75711 4.86365 4.99353 5.37566 5.51068 5.60057 5.91955 5.97738 6.08333 6.17667 6.25122 6.47713 6.58261 6.66094 6.76391 6.84431 6.95207 7.01391 7.08912 7.21468 7.26947 7.52634 7.71484 8.04094 8.19925 8.45651 8.87082 9.30648 9.74978 10.44866 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.004556 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.191614 B = 6144.762970 C = 7281.519103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.154 4.154 3 C 0.213 3.787 4 N -0.429 5.429 5 C -0.340 4.340 6 H 0.099 0.901 7 C 0.043 3.957 8 N -0.853 5.853 9 Si 0.913 3.087 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.515 3.485 14 O -0.593 6.593 15 C -0.107 4.107 16 C -0.058 4.058 17 C -0.151 4.151 18 C -0.066 4.066 19 C -0.053 4.053 20 C 0.285 3.715 21 N -0.537 5.537 22 C 0.257 3.743 23 N -0.490 5.490 24 H 0.440 0.560 25 N -0.306 5.306 26 C -0.038 4.038 27 H 0.207 0.793 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.275 0.725 31 H 0.181 0.819 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.222 0.778 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -12.586 4.515 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.155 4.155 3 C 0.091 3.909 4 N -0.146 5.146 5 C -0.468 4.468 6 H 0.116 0.884 7 C -0.164 4.164 8 N -0.489 5.489 9 Si 0.738 3.262 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.202 1.202 13 C 0.305 3.695 14 O -0.478 6.478 15 C -0.110 4.110 16 C -0.076 4.076 17 C -0.169 4.169 18 C -0.086 4.086 19 C -0.056 4.056 20 C 0.006 3.994 21 N -0.265 5.265 22 C -0.042 4.042 23 N -0.208 5.208 24 H 0.286 0.714 25 N -0.135 5.135 26 C -0.060 4.060 27 H 0.224 0.776 28 H 0.144 0.856 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.198 0.802 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.238 0.762 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.266 -11.666 4.852 12.638 hybrid contribution -0.550 -0.702 -0.223 0.920 sum -0.816 -12.368 4.629 13.231 Atomic orbital electron populations 1.24585 0.95639 1.02143 1.04969 1.24329 0.95484 0.98628 0.97069 1.18481 0.81570 0.86728 1.04145 1.43172 1.54857 1.10707 1.05861 1.19591 1.36535 1.00200 0.90463 0.88366 1.25451 0.94105 0.96283 1.00556 1.69863 1.28558 1.15018 1.35411 0.86082 0.78471 0.79388 0.82265 1.18747 1.20225 1.20216 1.18289 0.81384 0.85936 0.83850 1.90639 1.54171 1.74605 1.28409 1.19883 1.00470 0.94540 0.96058 1.23097 0.90789 0.96983 0.96753 1.21165 1.02052 0.94044 0.99619 1.21219 0.95351 0.99581 0.92461 1.17201 1.03185 0.90853 0.94313 1.22437 0.92862 0.91091 0.93048 1.70510 1.28304 1.05757 1.21908 1.26049 0.90648 0.98448 0.89059 1.48138 1.39225 1.09268 1.24147 0.71447 1.78361 1.24466 1.01677 1.08947 1.21225 0.96595 0.90513 0.97633 0.77593 0.85596 0.90049 0.91458 0.80231 0.85605 0.85434 0.76200 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.15 19.25 29.55 0.57 -4.58 16 2 C -0.15 -3.54 13.60 -37.12 -0.51 -4.05 16 3 C 0.21 5.14 5.32 -6.83 -0.04 5.10 16 4 N -0.43 -10.73 2.48 -119.05 -0.30 -11.02 16 5 C -0.34 -8.15 5.92 -15.00 -0.09 -8.24 16 6 H 0.10 2.30 6.34 -52.49 -0.33 1.97 16 7 C 0.04 1.01 4.78 -17.45 -0.08 0.93 16 8 N -0.85 -20.73 11.52 55.50 0.64 -20.09 16 9 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 10 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 11 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 13 C 0.52 13.08 7.42 -12.38 -0.09 12.98 16 14 O -0.59 -16.34 16.27 5.29 0.09 -16.25 16 15 C -0.11 -2.37 5.64 -105.01 -0.59 -2.96 16 16 C -0.06 -1.15 7.87 -39.11 -0.31 -1.46 16 17 C -0.15 -2.53 10.02 -39.69 -0.40 -2.92 16 18 C -0.07 -1.09 9.68 -39.16 -0.38 -1.46 16 19 C -0.05 -0.97 5.87 -104.95 -0.62 -1.58 16 20 C 0.28 4.84 7.77 -156.62 -1.22 3.62 16 21 N -0.54 -7.72 10.81 -12.38 -0.13 -7.85 16 22 C 0.26 2.47 13.11 -90.69 -1.19 1.28 16 23 N -0.49 -5.09 7.44 29.52 0.22 -4.87 16 24 H 0.44 2.68 8.96 -182.35 -1.63 1.05 16 25 N -0.31 -4.94 12.42 32.10 0.40 -4.55 16 26 C -0.04 -0.79 9.22 -38.82 -0.36 -1.15 16 27 H 0.21 3.20 7.80 -54.10 -0.42 2.78 16 28 H 0.13 3.07 5.65 -51.93 -0.29 2.78 16 29 H 0.08 1.98 7.67 -51.93 -0.40 1.58 16 30 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 31 H 0.18 3.83 4.77 -52.49 -0.25 3.58 16 32 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.13 1.86 7.82 -52.49 -0.41 1.45 16 34 H 0.22 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.13 2.85 7.58 -52.49 -0.40 2.45 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -32.28 318.34 -8.73 -41.01 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.12 Total: 10.25 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -5.29 Total: -4.50 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.83 Total: -48.38 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.28 -8.73 -41.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367188607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.088 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds