Wall clock time and date at job start Tue Mar 31 2020 07:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47093 * 4.50227 * 3 2 1 5 5 C 1.36880 * 119.99963 * 95.72523 * 4 3 2 6 6 H 1.08002 * 119.99484 * 219.49327 * 5 4 3 7 7 C 1.39046 * 119.99908 * 39.48924 * 5 4 3 8 8 N 1.31361 * 120.00078 * 18.69352 * 7 5 4 9 9 Si 1.86800 * 119.99758 * 198.69522 * 7 5 4 10 10 H 1.48509 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47053 * 119.99709 * 9 7 5 12 12 H 1.48503 * 109.47053 * 240.00030 * 9 7 5 13 13 C 1.34774 * 119.99845 * 275.72648 * 4 3 2 14 14 O 1.21586 * 120.00084 * 4.55586 * 13 4 3 15 15 C 1.47742 * 120.00046 * 184.56165 * 13 4 3 16 16 C 1.39730 * 120.08993 * 22.68666 * 15 13 4 17 17 C 1.38004 * 120.08925 * 179.97438 * 16 15 13 18 18 C 1.38179 * 120.27815 * 0.02562 * 17 16 15 19 19 C 1.39426 * 120.18568 * 359.97438 * 18 17 16 20 20 C 1.48418 * 120.05051 * 180.02562 * 19 18 17 21 21 N 1.33976 * 125.64617 * 359.97438 * 20 19 18 22 22 C 1.30683 * 109.78215 * 179.97438 * 21 20 19 23 23 N 1.34526 * 108.28781 * 0.02562 * 22 21 20 24 24 H 0.96997 * 126.73607 * 180.02562 * 23 22 21 25 25 N 1.31493 * 125.65603 * 179.69218 * 20 19 18 26 26 C 1.39077 * 119.90774 * 359.72071 * 19 18 17 27 27 H 4.40640 * 5.51527 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.46894 * 124.49718 * 3 2 1 29 29 H 1.08998 * 109.47075 * 244.50032 * 3 2 1 30 30 H 0.97001 * 119.99851 * 180.02562 * 8 7 5 31 31 H 1.07998 * 119.95836 * 359.97438 * 16 15 13 32 32 H 1.07990 * 119.86150 * 180.02562 * 17 16 15 33 33 H 1.07993 * 119.90782 * 179.97438 * 18 17 16 34 34 H 1.07996 * 125.85635 * 180.02562 * 22 21 20 35 35 H 1.07997 * 120.14425 * 180.29419 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3761 -0.1084 5 6 3.4748 -1.8873 -1.3319 6 1 3.2255 -2.9089 -1.5783 7 6 4.1407 -1.0914 -2.2573 8 7 4.7644 -0.0052 -1.8612 9 14 4.1484 -1.5667 -4.0638 10 1 3.3800 -2.8241 -4.2481 11 1 3.5238 -0.4826 -4.8635 12 1 5.5481 -1.7718 -4.5157 13 6 3.2501 -2.1393 0.9964 14 8 2.8708 -1.7147 2.0708 15 6 3.8372 -3.4917 0.9022 16 6 4.6851 -3.8148 -0.1604 17 6 5.2340 -5.0780 -0.2482 18 6 4.9488 -6.0298 0.7121 19 6 4.1043 -5.7198 1.7773 20 6 3.8005 -6.7442 2.8074 21 7 4.2732 -7.9977 2.8252 22 6 3.8088 -8.6307 3.8699 23 7 3.0161 -7.7880 4.5562 24 1 2.5350 -7.9819 5.3758 25 7 3.0270 -6.5705 3.8565 26 6 3.5520 -4.4473 1.8768 27 1 -1.0498 -0.0005 0.0002 28 1 3.0090 0.5828 -0.8469 29 1 3.0091 0.4432 0.9275 30 1 5.2286 0.5502 -2.5069 31 1 4.9112 -3.0751 -0.9141 32 1 5.8891 -5.3236 -1.0708 33 1 5.3813 -7.0165 0.6373 34 1 4.0244 -9.6548 4.1365 35 1 2.9011 -4.2016 2.7028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367188607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:39 Heat of formation + Delta-G solvation = 132.778724 kcal Electronic energy + Delta-G solvation = -22430.770888 eV Core-core repulsion = 19011.259259 eV Total energy + Delta-G solvation = -3419.511629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.101 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.01627 -41.10940 -39.16036 -37.09165 -34.50701 -34.06572 -33.25161 -32.81379 -31.89224 -30.87096 -28.46161 -26.96150 -24.82510 -24.31350 -22.98776 -21.90089 -20.93449 -19.96097 -19.33981 -18.61955 -17.70992 -17.05135 -16.90276 -16.46880 -16.41758 -15.99881 -15.81912 -15.48685 -14.98903 -14.57402 -14.44207 -14.33200 -13.95220 -13.50064 -13.41185 -13.12979 -12.93049 -12.81625 -12.40157 -12.14896 -11.99908 -11.50692 -11.39891 -11.21238 -11.12045 -11.00804 -10.84629 -10.48176 -9.87879 -9.63041 -9.41682 -8.38278 -6.11211 -0.11405 0.17665 0.91442 1.45205 1.52591 1.64503 1.73201 1.79828 1.86456 1.98129 2.21163 2.34968 2.89062 2.92159 3.13608 3.19856 3.64548 3.72911 4.05684 4.13861 4.19786 4.37223 4.54809 4.61894 4.68284 4.90513 5.01551 5.05774 5.14050 5.15659 5.28282 5.42227 5.48746 5.61909 5.70504 5.84063 6.04815 6.28419 6.35108 6.74476 7.01987 7.04588 7.40894 7.86683 8.66634 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.004556 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.191614 B = 6144.762970 C = 7281.519103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.223 4.223 3 C 0.217 3.783 4 N -0.433 5.433 5 C -0.353 4.353 6 H 0.102 0.898 7 C 0.012 3.988 8 N -0.883 5.883 9 Si 0.980 3.020 10 H -0.257 1.257 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.496 3.504 14 O -0.633 6.633 15 C -0.132 4.132 16 C -0.068 4.068 17 C -0.133 4.133 18 C -0.051 4.051 19 C -0.050 4.050 20 C 0.262 3.738 21 N -0.564 5.564 22 C 0.282 3.718 23 N -0.475 5.475 24 H 0.459 0.541 25 N -0.347 5.347 26 C -0.052 4.052 27 H 0.256 0.744 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.280 0.720 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.284 0.716 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -15.989 3.548 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.224 4.224 3 C 0.094 3.906 4 N -0.149 5.149 5 C -0.480 4.480 6 H 0.119 0.881 7 C -0.193 4.193 8 N -0.519 5.519 9 Si 0.802 3.198 10 H -0.181 1.181 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.288 3.712 14 O -0.522 6.522 15 C -0.134 4.134 16 C -0.087 4.087 17 C -0.151 4.151 18 C -0.072 4.072 19 C -0.053 4.053 20 C -0.017 4.017 21 N -0.292 5.292 22 C -0.015 4.015 23 N -0.195 5.195 24 H 0.308 0.692 25 N -0.178 5.178 26 C -0.074 4.074 27 H 0.272 0.728 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.175 0.825 34 H 0.299 0.701 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.236 -15.080 3.902 15.578 hybrid contribution -0.618 0.244 0.219 0.700 sum -0.854 -14.836 4.122 15.421 Atomic orbital electron populations 1.25637 0.96493 0.98845 1.01493 1.24395 0.96027 1.01724 1.00243 1.18250 0.83103 0.86498 1.02710 1.43403 1.54354 1.10824 1.06285 1.19799 1.37282 1.00697 0.90225 0.88053 1.26209 0.93094 0.95879 1.04085 1.69950 1.29049 1.15982 1.36903 0.85072 0.78803 0.78991 0.76905 1.18053 1.20588 1.19173 1.18941 0.81411 0.87442 0.83440 1.90571 1.56204 1.75817 1.29656 1.19762 1.02293 0.93358 0.98031 1.22904 0.91458 0.98335 0.96031 1.21504 1.01047 0.92210 1.00314 1.21531 0.93921 1.00576 0.91131 1.17404 1.02421 0.90192 0.95258 1.22237 0.94201 0.92048 0.93258 1.70460 1.29692 1.04790 1.24289 1.27200 0.87811 0.99772 0.86753 1.48046 1.39234 1.07740 1.24496 0.69162 1.78250 1.25066 1.04851 1.09598 1.21045 0.97558 0.91774 0.97015 0.72786 0.86441 0.92012 0.91035 0.81651 0.81685 0.82479 0.70052 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.16 19.25 74.32 1.43 -6.72 16 2 C -0.22 -10.60 13.60 31.13 0.42 -10.18 16 3 C 0.22 11.18 5.32 84.57 0.45 11.63 16 4 N -0.43 -22.94 2.48 -648.81 -1.61 -24.55 16 5 C -0.35 -17.47 5.92 84.10 0.50 -16.97 16 6 H 0.10 4.86 6.34 -2.91 -0.02 4.84 16 7 C 0.01 0.57 4.78 84.96 0.41 0.98 16 8 N -0.88 -44.19 11.52 21.68 0.25 -43.94 16 9 Si 0.98 36.85 29.59 68.60 2.03 38.88 16 10 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 11 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 12 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 13 C 0.50 26.99 7.42 86.76 0.64 27.64 16 14 O -0.63 -37.80 16.27 -3.99 -0.06 -37.86 16 15 C -0.13 -6.17 5.64 -20.12 -0.11 -6.29 16 16 C -0.07 -2.78 7.87 22.58 0.18 -2.60 16 17 C -0.13 -4.21 10.02 22.20 0.22 -3.99 16 18 C -0.05 -1.60 9.68 22.54 0.22 -1.38 16 19 C -0.05 -1.84 5.87 -20.08 -0.12 -1.95 16 20 C 0.26 8.69 7.77 137.47 1.07 9.76 16 21 N -0.56 -14.64 10.81 -193.08 -2.09 -16.73 16 22 C 0.28 4.28 13.11 180.37 2.37 6.65 16 23 N -0.48 -8.70 7.44 -60.52 -0.45 -9.15 16 24 H 0.46 4.34 8.96 -213.11 -1.91 2.43 16 25 N -0.35 -11.11 12.42 -52.34 -0.65 -11.76 16 26 C -0.05 -2.29 9.22 22.76 0.21 -2.08 16 27 H 0.26 6.99 7.80 -4.43 -0.03 6.96 16 28 H 0.12 6.12 5.65 -2.39 -0.01 6.10 16 29 H 0.06 3.30 7.67 -2.39 -0.02 3.28 16 30 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 31 H 0.17 7.22 4.77 -2.91 -0.01 7.20 16 32 H 0.17 3.91 8.06 -2.92 -0.02 3.88 16 33 H 0.16 4.00 7.82 -2.91 -0.02 3.98 16 34 H 0.28 0.25 8.06 -2.91 -0.02 0.23 16 35 H 0.11 5.15 7.58 -2.91 -0.02 5.13 16 Total: -1.00 -76.37 318.34 4.55 -71.82 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.75 Total: 28.80 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 7.88 Total: 4.49 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.55 Total: -106.13 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.06 Total: -37.86 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Total: -76.37 4.55 -71.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367188607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.600 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds