Wall clock time and date at job start Tue Mar 31 2020 07:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47308 * 2 1 4 4 C 1.50701 * 109.47470 * 239.99743 * 2 1 3 5 5 H 1.08000 * 119.99813 * 240.00391 * 4 2 1 6 6 C 1.37881 * 119.99869 * 60.00069 * 4 2 1 7 7 N 1.31514 * 119.99956 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00092 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47379 * 89.99815 * 8 6 4 10 10 H 1.48496 * 109.47197 * 210.00033 * 8 6 4 11 11 H 1.48504 * 109.47064 * 329.99688 * 8 6 4 12 12 C 1.53000 * 109.47087 * 119.99973 * 2 1 3 13 13 N 1.46504 * 109.47329 * 299.99888 * 12 2 1 14 14 C 1.34771 * 120.00488 * 179.97438 * 13 12 2 15 15 O 1.21279 * 119.99620 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99936 * 180.02562 * 14 13 12 17 17 C 1.50708 * 109.46940 * 179.97438 * 16 14 13 18 18 C 1.38168 * 120.42681 * 265.00139 * 17 16 14 19 19 N 1.31873 * 120.77409 * 180.30210 * 18 17 16 20 20 C 1.31908 * 121.76179 * 359.42367 * 19 18 17 21 21 C 1.38122 * 120.77726 * 0.57002 * 20 19 18 22 22 C 1.38775 * 120.42714 * 85.01680 * 17 16 14 23 23 Cl 1.73600 * 120.80380 * 359.96207 * 22 17 16 24 24 H 1.08997 * 109.47626 * 300.00374 * 1 2 3 25 25 H 1.09004 * 109.47128 * 60.00202 * 1 2 3 26 26 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47327 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47239 * 299.99684 * 3 2 1 29 29 H 1.08998 * 109.47352 * 59.99769 * 3 2 1 30 30 H 0.96999 * 120.00045 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47614 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.47310 * 59.99596 * 12 2 1 33 33 H 0.97006 * 119.99744 * 0.02562 * 13 12 2 34 34 H 1.08998 * 109.47555 * 59.99935 * 16 14 13 35 35 H 1.09000 * 109.47024 * 299.99480 * 16 14 13 36 36 H 1.08002 * 119.60902 * 0.02562 * 18 17 16 37 37 H 1.08000 * 119.61446 * 180.31877 * 20 19 18 38 38 H 1.07998 * 120.42906 * 179.74255 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 6 2.0399 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4455 14 6 1.8767 -0.4913 3.6696 15 8 2.5732 -1.4779 3.7808 16 6 1.3739 0.2188 4.9000 17 6 1.8753 -0.4922 6.1305 18 6 1.0898 -1.4381 6.7610 19 7 1.5193 -2.0601 7.8415 20 6 2.7095 -1.8172 8.3557 21 6 3.5509 -0.8849 7.7807 22 6 3.1317 -0.2052 6.6452 23 17 4.1545 0.9750 5.8872 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 0.7090 1.1613 -3.4845 31 1 3.1299 -0.7217 1.2491 32 1 1.6765 -1.7490 1.2493 33 1 0.9936 0.7579 2.3565 34 1 0.2839 0.2189 4.8996 35 1 1.7373 1.2465 4.9003 36 1 0.1108 -1.6674 6.3667 37 1 3.0283 -2.3506 9.2390 38 1 4.5226 -0.6875 8.2088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412423487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:10 Heat of formation + Delta-G solvation = -20.123720 kcal Electronic energy + Delta-G solvation = -21310.068427 eV Core-core repulsion = 17985.033944 eV Total energy + Delta-G solvation = -3325.034483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60055 -39.11366 -36.87969 -36.40816 -33.53740 -33.29526 -32.03582 -30.91447 -28.29895 -25.75174 -25.57143 -24.79380 -23.83170 -22.64740 -20.12814 -18.81854 -17.59775 -17.05775 -16.98663 -15.82909 -15.72607 -14.89215 -14.79033 -14.66499 -14.24136 -14.01737 -13.57537 -13.21702 -13.14365 -12.88249 -12.46659 -12.30360 -12.20741 -11.89250 -11.37557 -11.21684 -11.09401 -10.87885 -10.71094 -10.40869 -10.22432 -9.81754 -9.70483 -9.66012 -9.58531 -9.40045 -9.09602 -8.80587 -8.48052 -8.33762 -6.04067 -4.14093 0.79945 0.85717 1.80074 2.98992 3.27136 3.34183 3.36981 3.40710 3.81917 4.16278 4.38772 4.40805 4.49656 4.68658 5.01247 5.13724 5.20872 5.22845 5.38458 5.47777 5.56325 5.80445 6.20359 6.30578 6.31718 6.48398 6.75354 6.79629 6.90579 6.99384 6.99728 7.32948 7.53308 7.67552 7.68189 7.98836 8.00729 8.12739 8.36416 8.65158 8.86654 9.51877 10.97336 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.029391 B = 0.003293 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.432958 B = 8500.261712 C = 8712.337188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.715 5.715 14 C 0.508 3.492 15 O -0.544 6.544 16 C -0.108 4.108 17 C -0.101 4.101 18 C 0.125 3.875 19 N -0.481 5.481 20 C 0.107 3.893 21 C -0.165 4.165 22 C 0.021 3.979 23 Cl -0.047 7.047 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 2.029 18.916 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.366 5.366 14 C 0.293 3.707 15 O -0.422 6.422 16 C -0.149 4.149 17 C -0.104 4.104 18 C -0.032 4.032 19 N -0.189 5.189 20 C -0.050 4.050 21 C -0.186 4.186 22 C -0.014 4.014 23 Cl -0.018 7.018 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.644 0.921 19.154 19.187 hybrid contribution 0.773 0.685 -1.446 1.777 sum 1.417 1.606 17.708 17.837 Atomic orbital electron populations 1.21828 0.97734 0.99176 1.00093 1.18355 0.92805 0.92760 0.90558 1.21828 0.98573 0.98339 1.00081 1.20987 1.31498 1.12092 0.89904 0.92466 1.24875 0.94864 0.94901 0.98852 1.69799 1.36717 1.22710 1.23239 0.86574 0.79348 0.79400 0.82581 1.20692 1.21260 1.19900 1.21720 0.98148 0.95758 0.83330 1.46280 1.52611 1.31801 1.05877 1.20176 0.81105 0.84933 0.84476 1.90699 1.38205 1.26435 1.86835 1.20707 1.03192 1.00614 0.90359 1.20281 0.93762 0.99007 0.97385 1.22679 0.99626 0.90319 0.90562 1.67676 1.15684 1.24434 1.11110 1.22756 0.89051 0.94327 0.98856 1.22065 1.02319 0.98222 0.95987 1.21195 0.91813 0.93819 0.94603 1.98405 1.66737 1.55484 1.81129 0.97476 0.89599 0.95446 0.95480 0.89588 0.97494 0.92998 0.92752 0.92726 0.76668 0.87277 0.87522 0.81927 0.81929 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.15 0.30 -2.57 16 2 C 0.06 1.27 0.50 -155.67 -0.08 1.19 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.16 8.01 -34.44 -0.28 -13.44 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.39 9.35 55.43 0.52 -22.87 16 8 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.12 4.96 -60.29 -0.30 -12.41 16 14 C 0.51 8.28 7.82 -10.99 -0.09 8.20 16 15 O -0.54 -11.00 16.03 5.56 0.09 -10.91 16 16 C -0.11 -1.25 5.41 -29.03 -0.16 -1.41 16 17 C -0.10 -1.24 4.39 -104.45 -0.46 -1.70 16 18 C 0.13 1.48 10.84 -17.56 -0.19 1.29 16 19 N -0.48 -5.82 10.36 -13.27 -0.14 -5.96 16 20 C 0.11 1.07 11.18 -17.56 -0.20 0.88 16 21 C -0.17 -1.68 9.94 -39.41 -0.39 -2.08 16 22 C 0.02 0.25 6.37 -39.17 -0.25 0.00 16 23 Cl -0.05 -0.57 27.61 -51.86 -1.43 -2.00 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 5.97 6.16 -40.82 -0.25 5.72 16 34 H 0.11 0.94 8.06 -51.93 -0.42 0.52 16 35 H 0.11 1.10 7.24 -51.93 -0.38 0.73 16 36 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -29.99 329.56 -7.80 -37.79 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.89 Total: 3.62 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.59 Total: -7.83 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.08 Total: -41.25 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.43 Total: -2.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.99 -7.80 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412423487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.669 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds