Wall clock time and date at job start Tue Mar 31 2020 08:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47387 * 2 1 4 4 C 1.50702 * 109.46882 * 119.99969 * 2 1 3 5 5 C 1.38227 * 120.01086 * 16.18298 * 4 2 1 6 6 C 1.38223 * 120.01535 * 179.74440 * 5 4 2 7 7 C 1.38260 * 120.02520 * 0.55371 * 6 5 4 8 8 C 1.38187 * 120.01091 * 359.70028 * 7 6 5 9 9 C 1.38336 * 120.00287 * 196.45612 * 4 2 1 10 10 Cl 1.73598 * 120.01522 * 0.02562 * 9 4 2 11 11 N 1.46499 * 109.47335 * 239.99890 * 2 1 3 12 12 C 1.46499 * 119.99866 * 295.01869 * 11 2 1 13 13 C 1.34770 * 119.99887 * 115.00939 * 11 2 1 14 14 O 1.21587 * 120.00378 * 0.02562 * 13 11 2 15 15 N 1.34785 * 119.99762 * 179.72701 * 13 11 2 16 16 C 1.46497 * 119.99790 * 180.27541 * 15 13 11 17 17 C 1.50704 * 109.47131 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99732 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99919 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00506 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99797 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47624 * 89.99798 * 21 19 17 23 23 H 1.48509 * 109.47218 * 210.00116 * 21 19 17 24 24 H 1.48502 * 109.47199 * 330.00088 * 21 19 17 25 25 H 1.09006 * 109.47099 * 299.99909 * 1 2 3 26 26 H 1.08996 * 109.46993 * 59.99890 * 1 2 3 27 27 H 1.08997 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99160 * 0.02562 * 5 4 2 29 29 H 1.08007 * 119.98506 * 180.24907 * 6 5 4 30 30 H 1.08003 * 119.99342 * 179.72731 * 7 6 5 31 31 H 1.08007 * 120.00473 * 180.02562 * 8 7 6 32 32 H 1.09008 * 109.46678 * 265.34267 * 12 11 2 33 33 H 1.08993 * 109.47471 * 25.34207 * 12 11 2 34 34 H 1.08998 * 109.47175 * 145.34802 * 12 11 2 35 35 H 0.96993 * 120.00135 * 0.28026 * 15 13 11 36 36 H 1.08995 * 109.47594 * 300.00564 * 16 15 13 37 37 H 1.09007 * 109.46840 * 60.00426 * 16 15 13 38 38 H 0.96997 * 120.00131 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.1789 -1.5168 1.9600 6 6 1.6409 -2.1726 3.0856 7 6 2.9537 -2.0135 3.4891 8 6 3.8064 -1.2034 2.7636 9 6 3.3461 -0.5511 1.6334 10 17 4.4164 0.4675 0.7221 11 7 2.0184 -0.6906 -1.1961 12 6 1.7567 -2.1210 -1.3742 13 6 2.7082 -0.0100 -2.1327 14 8 2.9257 1.1771 -1.9848 15 7 3.1623 -0.6466 -3.2306 16 6 3.9174 0.0919 -4.2457 17 6 4.3068 -0.8434 -5.3614 18 1 4.0200 -1.8838 -5.3187 19 6 5.0290 -0.3709 -6.4366 20 7 5.3786 0.8959 -6.4884 21 14 5.5110 -1.5300 -7.8198 22 1 4.4462 -1.5355 -8.8549 23 1 6.7879 -1.0739 -8.4256 24 1 5.6822 -2.9023 -7.2787 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.1521 -1.6380 1.6478 29 1 0.9748 -2.8058 3.6530 30 1 3.3130 -2.5227 4.3712 31 1 4.8320 -1.0795 3.0786 32 1 2.6077 -2.6945 -1.0066 33 1 0.8628 -2.3991 -0.8161 34 1 1.6052 -2.3337 -2.4325 35 1 2.9891 -1.5936 -3.3485 36 1 3.2995 0.8964 -4.6445 37 1 4.8161 0.5133 -3.7951 38 1 5.8864 1.2284 -7.2450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426414083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:56 Heat of formation + Delta-G solvation = -6.757273 kcal Electronic energy + Delta-G solvation = -21735.665678 eV Core-core repulsion = 18411.210808 eV Total energy + Delta-G solvation = -3324.454870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -40.18269 -38.89949 -36.24366 -35.83081 -34.11598 -32.77218 -31.72855 -30.82207 -29.19780 -27.09335 -26.57314 -24.16345 -22.56190 -22.52338 -20.76028 -19.07317 -17.99306 -17.31524 -16.07317 -16.00727 -15.58174 -15.27632 -14.86605 -14.70585 -14.05782 -13.80094 -13.71603 -13.29571 -13.10346 -12.89291 -12.35501 -12.23491 -12.07113 -11.87376 -11.76944 -11.66439 -11.47230 -11.39637 -10.97069 -10.90498 -10.82826 -10.48232 -10.24377 -9.35715 -9.31628 -9.03852 -8.72224 -8.67224 -8.33512 -7.66327 -6.11037 -4.17215 1.00520 1.08189 2.31435 3.17243 3.27219 3.33391 3.36065 3.64607 4.00900 4.35331 4.47100 4.61190 4.77824 4.88490 5.05113 5.16961 5.23487 5.25011 5.29472 5.30126 5.49824 5.59445 5.65225 5.75291 5.85755 5.98092 6.01456 6.12014 6.23826 6.32287 6.62991 6.83969 7.21234 7.58418 7.61525 7.64118 7.92552 8.07799 8.81895 8.98736 9.40186 9.55039 10.99239 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.003885 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.705938 B = 7206.388865 C = 7429.319006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.191 3.809 3 H 0.116 0.884 4 C -0.086 4.086 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.116 4.116 9 C -0.024 4.024 10 Cl -0.040 7.040 11 N -0.630 5.630 12 C 0.084 3.916 13 C 0.698 3.302 14 O -0.591 6.591 15 N -0.729 5.729 16 C 0.268 3.732 17 C -0.540 4.540 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.177 -7.850 19.810 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 H 0.134 0.866 4 C -0.088 4.088 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.135 4.135 9 C -0.051 4.051 10 Cl -0.011 7.011 11 N -0.369 5.369 12 C -0.060 4.060 13 C 0.400 3.600 14 O -0.469 6.469 15 N -0.382 5.382 16 C 0.147 3.853 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.772 -6.711 19.630 22.524 hybrid contribution 0.387 -1.123 -0.866 1.470 sum -8.384 -7.834 18.764 21.994 Atomic orbital electron populations 1.22236 0.94914 1.02054 1.02763 1.19641 0.93452 0.97675 0.80563 0.86630 1.20156 0.92296 0.98740 0.97580 1.21166 0.99914 0.95975 0.94995 1.21201 0.95917 0.99868 0.97057 1.21101 0.93723 0.98318 0.99689 1.21098 1.00630 0.97442 0.94293 1.21066 0.91941 0.97315 0.94797 1.98469 1.63963 1.65794 1.72879 1.47020 1.59871 1.09159 1.20861 1.21567 1.00785 0.81770 1.01866 1.16027 0.78654 0.85183 0.80163 1.90851 1.63504 1.13832 1.78751 1.45816 1.58241 1.12851 1.21271 1.18944 0.90554 0.91816 0.83987 1.21228 1.36107 0.95766 1.04765 0.92076 1.24931 0.95517 0.95283 0.98240 1.69982 1.37785 1.13590 1.30956 0.86436 0.78008 0.80742 0.81826 1.20506 1.21038 1.19795 0.91477 0.91471 0.92199 0.84812 0.85629 0.85435 0.85132 0.93394 0.91449 0.91425 0.78109 0.95849 0.95861 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.10 37.16 0.30 -1.44 16 2 C 0.19 2.69 2.20 -69.08 -0.15 2.54 16 3 H 0.12 1.97 6.29 -51.93 -0.33 1.64 16 4 C -0.09 -1.06 4.70 -104.59 -0.49 -1.55 16 5 C -0.10 -0.97 9.10 -39.59 -0.36 -1.33 16 6 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 7 C -0.11 -0.97 10.05 -39.59 -0.40 -1.36 16 8 C -0.12 -1.27 9.83 -39.55 -0.39 -1.66 16 9 C -0.02 -0.32 6.31 -39.49 -0.25 -0.57 16 10 Cl -0.04 -0.67 26.64 -51.86 -1.38 -2.05 16 11 N -0.63 -10.11 2.73 -181.01 -0.49 -10.60 16 12 C 0.08 1.05 9.28 59.85 0.56 1.61 16 13 C 0.70 14.82 7.82 -86.92 -0.68 14.14 16 14 O -0.59 -14.67 15.19 5.29 0.08 -14.59 16 15 N -0.73 -16.25 5.41 -66.41 -0.36 -16.61 16 16 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 17 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.53 5.56 -51.93 -0.29 0.24 16 28 H 0.13 1.00 5.96 -52.49 -0.31 0.69 16 29 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 30 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 31 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.66 6.72 -51.93 -0.35 0.31 16 34 H 0.07 0.84 6.62 -51.93 -0.34 0.49 16 35 H 0.39 7.53 6.16 -40.82 -0.25 7.28 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -33.24 329.81 -8.96 -42.20 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.79 Total: 3.67 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.71 Total: 2.67 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.12 Total: -53.02 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.08 Total: -14.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.38 Total: -2.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.24 -8.96 -42.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426414083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.441 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds