Wall clock time and date at job start Tue Mar 31 2020 08:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46993 * 2 1 4 4 C 1.50701 * 109.47090 * 240.00197 * 2 1 3 5 5 C 1.38233 * 120.00991 * 343.48282 * 4 2 1 6 6 C 1.38221 * 120.01385 * 180.02562 * 5 4 2 7 7 C 1.38258 * 120.02676 * 0.02562 * 6 5 4 8 8 C 1.38194 * 120.01237 * 359.68578 * 7 6 5 9 9 C 1.38331 * 120.00338 * 163.49891 * 4 2 1 10 10 Cl 1.73595 * 120.01609 * 359.97438 * 9 4 2 11 11 N 1.46497 * 109.47267 * 120.00019 * 2 1 3 12 12 C 1.46505 * 119.99912 * 65.57814 * 11 2 1 13 13 C 1.34775 * 120.00305 * 245.58275 * 11 2 1 14 14 O 1.21585 * 119.99566 * 359.97438 * 13 11 2 15 15 N 1.34774 * 119.99860 * 180.02562 * 13 11 2 16 16 C 1.46506 * 119.99847 * 179.97438 * 15 13 11 17 17 C 1.50697 * 109.47097 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00408 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99996 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99836 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47416 * 59.99494 * 21 19 17 23 23 H 1.48503 * 109.46991 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46689 * 299.99381 * 21 19 17 25 25 H 1.09003 * 109.46887 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47053 * 299.99669 * 1 2 3 27 27 H 1.08997 * 109.46882 * 59.99968 * 1 2 3 28 28 H 1.08004 * 119.99226 * 359.97438 * 5 4 2 29 29 H 1.07997 * 119.98287 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.99109 * 179.97438 * 7 6 5 31 31 H 1.08000 * 120.00477 * 180.30056 * 8 7 6 32 32 H 1.09004 * 109.46746 * 95.24545 * 12 11 2 33 33 H 1.08994 * 109.47637 * 215.24855 * 12 11 2 34 34 H 1.09004 * 109.47094 * 335.24976 * 12 11 2 35 35 H 0.96999 * 120.00082 * 359.97438 * 15 13 11 36 36 H 1.09000 * 109.47029 * 300.00024 * 16 15 13 37 37 H 1.09003 * 109.46834 * 60.00030 * 16 15 13 38 38 H 0.96997 * 119.99553 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 1.1809 -1.5222 -1.9562 6 6 1.6416 -2.1742 -3.0845 7 6 2.9545 -2.0153 -3.4877 8 6 3.8052 -1.1992 -2.7665 9 6 3.3459 -0.5503 -1.6338 10 17 4.4158 0.4692 -0.7233 11 7 2.0184 -0.6906 1.1961 12 6 1.7680 -2.1238 1.3680 13 6 2.6980 -0.0075 2.1385 14 8 2.9061 1.1819 1.9956 15 7 3.1476 -0.6430 3.2386 16 6 3.8868 0.0994 4.2627 17 6 4.2733 -0.8352 5.3799 18 1 3.9964 -1.8780 5.3318 19 6 4.9803 -0.3589 6.4636 20 7 5.3179 0.9108 6.5220 21 14 5.4600 -1.5176 7.8482 22 1 6.3171 -2.6041 7.3099 23 1 6.2091 -0.7650 8.8863 24 1 4.2353 -2.1047 8.4488 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.1555 -1.6478 -1.6409 29 1 0.9761 -2.8088 -3.6508 30 1 3.3141 -2.5253 -4.3692 31 1 4.8294 -1.0713 -3.0843 32 1 2.6299 -2.6884 1.0123 33 1 1.6027 -2.3398 2.4235 34 1 0.8852 -2.4096 0.7960 35 1 2.9819 -1.5920 3.3524 36 1 4.7857 0.5301 3.8215 37 1 3.2579 0.8972 4.6580 38 1 5.8156 1.2457 7.2842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426414087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:08 Heat of formation + Delta-G solvation = -6.874865 kcal Electronic energy + Delta-G solvation = -21731.292328 eV Core-core repulsion = 18406.832358 eV Total energy + Delta-G solvation = -3324.459970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -40.18502 -38.90079 -36.25052 -35.82998 -34.11545 -32.77091 -31.72747 -30.82651 -29.20153 -27.09404 -26.56592 -24.16757 -22.56137 -22.52596 -20.76145 -19.07472 -17.99084 -17.31699 -16.07673 -16.00414 -15.58434 -15.27231 -14.86933 -14.70665 -14.06016 -13.80247 -13.71873 -13.29628 -13.10307 -12.89022 -12.35991 -12.23148 -12.07074 -11.87620 -11.76597 -11.66470 -11.47353 -11.39937 -10.98333 -10.89875 -10.82811 -10.48764 -10.24249 -9.35880 -9.32987 -9.04166 -8.72683 -8.66775 -8.33400 -7.66348 -6.10784 -4.17057 1.00172 1.07845 2.30790 3.17179 3.28464 3.33214 3.35018 3.64377 4.00937 4.35422 4.46804 4.60957 4.77594 4.88657 5.04954 5.16844 5.23448 5.25131 5.29499 5.30037 5.49579 5.59527 5.65292 5.75224 5.85646 5.98022 6.01418 6.11865 6.23582 6.32267 6.62681 6.83934 7.21272 7.58193 7.61534 7.64172 7.92656 8.07982 8.81780 8.98780 9.40203 9.55065 10.99454 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.003875 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.605478 B = 7223.845965 C = 7443.486634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.191 3.809 3 H 0.116 0.884 4 C -0.086 4.086 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.116 4.116 9 C -0.024 4.024 10 Cl -0.041 7.041 11 N -0.630 5.630 12 C 0.084 3.916 13 C 0.699 3.301 14 O -0.591 6.591 15 N -0.729 5.729 16 C 0.269 3.731 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 -7.895 -19.900 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 H 0.134 0.866 4 C -0.088 4.088 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.135 4.135 9 C -0.051 4.051 10 Cl -0.012 7.012 11 N -0.369 5.369 12 C -0.060 4.060 13 C 0.400 3.600 14 O -0.470 6.470 15 N -0.382 5.382 16 C 0.147 3.853 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.139 4.139 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.603 -6.748 -19.711 22.540 hybrid contribution 0.394 -1.135 0.856 1.475 sum -8.209 -7.883 -18.855 22.023 Atomic orbital electron populations 1.22236 0.94918 1.02047 1.02761 1.19643 0.93458 0.97673 0.80550 0.86640 1.20153 0.92296 0.98699 0.97621 1.21168 0.99942 0.95943 0.94982 1.21199 0.95905 0.99917 0.97019 1.21103 0.93722 0.98257 0.99738 1.21098 1.00660 0.97429 0.94277 1.21061 0.91934 0.97320 0.94785 1.98468 1.63976 1.65780 1.72927 1.47025 1.60367 1.08882 1.20643 1.21568 1.00834 0.81694 1.01890 1.16024 0.78635 0.85200 0.80161 1.90851 1.63504 1.13645 1.78962 1.45816 1.58977 1.12618 1.20761 1.18940 0.90835 0.91749 0.83741 1.21191 1.36922 0.95513 1.04322 0.92126 1.24931 0.95498 0.95270 0.98245 1.69972 1.38209 1.13361 1.30771 0.86495 0.78648 0.80539 0.81320 1.20121 1.21095 1.20107 0.92210 0.91469 0.91486 0.84807 0.85625 0.85431 0.85129 0.93389 0.91444 0.91440 0.78110 0.95867 0.95848 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.12 37.16 0.30 -1.44 16 2 C 0.19 2.69 2.20 -69.08 -0.15 2.54 16 3 H 0.12 1.97 6.29 -51.93 -0.33 1.64 16 4 C -0.09 -1.06 4.68 -104.59 -0.49 -1.55 16 5 C -0.10 -0.96 9.10 -39.59 -0.36 -1.32 16 6 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 7 C -0.11 -0.96 10.05 -39.59 -0.40 -1.36 16 8 C -0.12 -1.27 9.83 -39.55 -0.39 -1.66 16 9 C -0.02 -0.32 6.31 -39.50 -0.25 -0.57 16 10 Cl -0.04 -0.67 26.77 -51.86 -1.39 -2.06 16 11 N -0.63 -10.11 2.73 -181.00 -0.49 -10.60 16 12 C 0.08 1.05 9.25 59.85 0.55 1.61 16 13 C 0.70 14.83 7.87 -86.92 -0.68 14.15 16 14 O -0.59 -14.69 15.28 5.29 0.08 -14.61 16 15 N -0.73 -16.26 5.41 -66.41 -0.36 -16.61 16 16 C 0.27 7.36 5.43 -5.19 -0.03 7.34 16 17 C -0.54 -15.02 9.28 -34.44 -0.32 -15.34 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H 0.06 0.53 5.58 -51.93 -0.29 0.24 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.13 1.00 5.96 -52.48 -0.31 0.69 16 29 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 30 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.83 6.65 -51.93 -0.35 0.49 16 34 H 0.07 0.66 6.76 -51.93 -0.35 0.31 16 35 H 0.39 7.53 6.17 -40.82 -0.25 7.28 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -33.22 330.15 -8.97 -42.19 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.79 Total: 3.70 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.71 Total: 2.70 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.12 Total: -53.04 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.08 Total: -14.61 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.39 Total: -2.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.22 -8.97 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426414087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.317 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds