Wall clock time and date at job start Tue Mar 31 2020 08:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47347 * 2 1 4 4 C 1.50694 * 109.47314 * 120.00118 * 2 1 3 5 5 C 1.38265 * 119.99248 * 88.11939 * 4 2 1 6 6 C 1.38222 * 120.02594 * 179.77103 * 5 4 2 7 7 C 1.38237 * 120.01207 * 0.50223 * 6 5 4 8 8 C 1.38327 * 119.98873 * 359.74825 * 7 6 5 9 9 Cl 1.73593 * 120.01527 * 180.02562 * 8 7 6 10 10 C 1.38198 * 119.99691 * 268.39166 * 4 2 1 11 11 N 1.46501 * 109.47109 * 240.00513 * 2 1 3 12 12 C 1.46503 * 119.99574 * 318.17665 * 11 2 1 13 13 C 1.34774 * 120.00289 * 138.17714 * 11 2 1 14 14 O 1.21584 * 120.00257 * 359.97438 * 13 11 2 15 15 N 1.34779 * 119.99704 * 179.97438 * 13 11 2 16 16 C 1.46503 * 119.99742 * 180.02562 * 15 13 11 17 17 C 1.50702 * 109.47012 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00055 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00181 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46978 * 59.99837 * 21 19 17 23 23 H 1.48505 * 109.47446 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47260 * 299.99837 * 21 19 17 25 25 H 1.09001 * 109.47004 * 299.99921 * 1 2 3 26 26 H 1.08995 * 109.47263 * 59.99401 * 1 2 3 27 27 H 1.08995 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.98546 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.99599 * 180.25716 * 6 5 4 30 30 H 1.08003 * 120.00420 * 179.72802 * 7 6 5 31 31 H 1.08002 * 120.00324 * 0.02562 * 10 4 2 32 32 H 1.09006 * 109.47298 * 96.18510 * 12 11 2 33 33 H 1.09002 * 109.47192 * 216.18462 * 12 11 2 34 34 H 1.08997 * 109.47188 * 336.18148 * 12 11 2 35 35 H 0.96998 * 120.00047 * 0.02562 * 15 13 11 36 36 H 1.09000 * 109.46918 * 300.00484 * 16 15 13 37 37 H 1.08997 * 109.47197 * 60.00344 * 16 15 13 38 38 H 0.97000 * 119.99975 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2257 -2.0793 1.2076 6 6 2.6910 -2.7309 2.3343 7 6 2.9534 -2.0157 3.4878 8 6 2.7552 -0.6470 3.5129 9 17 3.0851 0.2519 4.9608 10 6 2.2944 0.0056 2.3830 11 7 2.0183 -0.6905 -1.1962 12 6 1.3710 -1.9260 -1.6443 13 6 3.0630 -0.1892 -1.8845 14 8 3.5999 0.8365 -1.5130 15 7 3.5125 -0.8248 -2.9847 16 6 4.6484 -0.2801 -3.7326 17 6 4.9487 -1.1717 -4.9099 18 1 4.3532 -2.0558 -5.0834 19 6 5.9842 -0.8592 -5.7649 20 7 6.7097 0.2172 -5.5532 21 14 6.3569 -1.9647 -7.2237 22 1 5.1674 -2.0319 -8.1104 23 1 7.5083 -1.4126 -7.9819 24 1 6.6908 -3.3281 -6.7392 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.0163 -2.6391 0.3081 29 1 2.8458 -3.7996 2.3147 30 1 3.3127 -2.5257 4.3695 31 1 2.1387 1.0742 2.4022 32 1 0.6390 -1.6930 -2.4176 33 1 2.1227 -2.6043 -2.0482 34 1 0.8698 -2.4002 -0.8005 35 1 3.0839 -1.6428 -3.2814 36 1 4.4030 0.7206 -4.0883 37 1 5.5215 -0.2305 -3.0820 38 1 7.4385 0.4368 -6.1545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:16 Heat of formation + Delta-G solvation = -5.970966 kcal Electronic energy + Delta-G solvation = -21313.181912 eV Core-core repulsion = 17988.761138 eV Total energy + Delta-G solvation = -3324.420774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.29278 -38.92798 -36.74761 -35.78246 -34.22683 -32.76721 -31.76249 -30.72407 -29.45155 -27.24113 -26.81595 -23.82026 -22.79086 -22.57073 -20.91267 -19.23744 -18.06269 -17.22294 -16.24259 -16.01677 -15.65179 -15.26678 -15.04090 -14.60600 -14.16964 -13.87285 -13.59613 -13.53743 -13.21143 -13.00896 -12.54985 -12.45524 -12.29479 -11.93219 -11.84590 -11.76538 -11.46651 -11.22996 -11.18724 -10.97620 -10.90204 -10.82910 -10.28900 -9.39398 -9.36821 -9.01379 -8.78632 -8.72247 -8.47785 -7.75891 -6.14606 -4.21456 1.04812 1.14148 1.99003 3.09406 3.25776 3.30866 3.32464 3.53045 3.87433 4.31776 4.51350 4.69630 4.78608 4.89675 5.02795 5.05702 5.17075 5.19124 5.21310 5.29788 5.45439 5.46787 5.62327 5.70799 5.75941 5.89090 5.98565 6.09423 6.21156 6.37629 6.67425 6.72774 7.12038 7.50898 7.52962 7.58003 7.84546 8.02241 8.75338 8.89707 9.31289 9.47637 10.95591 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.003239 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.477789 B = 8643.171754 C = 8939.705678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.195 3.805 3 H 0.109 0.891 4 C -0.073 4.073 5 C -0.112 4.112 6 C -0.107 4.107 7 C -0.117 4.117 8 C -0.032 4.032 9 Cl -0.076 7.076 10 C -0.101 4.101 11 N -0.635 5.635 12 C 0.073 3.927 13 C 0.696 3.304 14 O -0.596 6.596 15 N -0.727 5.727 16 C 0.267 3.733 17 C -0.542 4.542 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.742 -6.055 16.389 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.090 3.910 3 H 0.127 0.873 4 C -0.075 4.075 5 C -0.130 4.130 6 C -0.125 4.125 7 C -0.136 4.136 8 C -0.059 4.059 9 Cl -0.048 7.048 10 C -0.120 4.120 11 N -0.375 5.375 12 C -0.071 4.071 13 C 0.397 3.603 14 O -0.474 6.474 15 N -0.379 5.379 16 C 0.145 3.855 17 C -0.581 4.581 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.220 0.780 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.102 -5.088 16.647 21.787 hybrid contribution 0.209 -0.970 -0.794 1.271 sum -12.893 -6.058 15.853 21.313 Atomic orbital electron populations 1.22119 0.93559 1.02643 1.02859 1.19657 0.93635 0.97081 0.80592 0.87285 1.20344 0.98101 0.94107 0.94906 1.21445 0.98566 0.94254 0.98730 1.21114 0.98882 1.00131 0.92413 1.21018 1.01240 0.92040 0.99303 1.20858 1.04004 0.92476 0.88552 1.98363 1.94052 1.75304 1.37032 1.20876 0.99473 1.00509 0.91143 1.47070 1.34707 1.27101 1.28573 1.21829 0.98253 0.86882 1.00102 1.16077 0.79802 0.83595 0.80816 1.90866 1.60242 1.25493 1.70845 1.45830 1.36749 1.28365 1.26997 1.18982 0.82194 0.94561 0.89715 1.21172 1.16405 1.10053 1.10464 0.92075 1.24939 0.95615 0.95390 0.98027 1.69969 1.19612 1.24786 1.37866 0.86478 0.77939 0.80500 0.81987 1.20092 1.21072 1.20093 0.91234 0.91384 0.92030 0.84709 0.85186 0.85227 0.84856 0.92662 0.91326 0.90643 0.77990 0.95737 0.95773 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.84 37.16 0.33 -1.13 16 2 C 0.20 2.56 2.80 -69.08 -0.19 2.37 16 3 H 0.11 1.68 7.04 -51.93 -0.37 1.31 16 4 C -0.07 -0.91 5.01 -104.63 -0.52 -1.44 16 5 C -0.11 -1.29 8.98 -39.58 -0.36 -1.64 16 6 C -0.11 -1.11 10.05 -39.59 -0.40 -1.50 16 7 C -0.12 -1.24 9.83 -39.55 -0.39 -1.63 16 8 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 9 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 10 C -0.10 -1.24 9.48 -39.55 -0.37 -1.61 16 11 N -0.64 -9.51 2.49 -181.00 -0.45 -9.96 16 12 C 0.07 0.78 7.62 59.85 0.46 1.24 16 13 C 0.70 14.47 8.28 -86.92 -0.72 13.75 16 14 O -0.60 -14.96 15.77 5.29 0.08 -14.88 16 15 N -0.73 -15.66 5.42 -66.41 -0.36 -16.02 16 16 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 17 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 21 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 28 H 0.14 1.39 4.45 -52.48 -0.23 1.16 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.74 6.70 -51.93 -0.35 0.39 16 34 H 0.08 0.61 5.00 -51.93 -0.26 0.36 16 35 H 0.39 7.12 6.19 -40.82 -0.25 6.87 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -33.04 331.08 -9.11 -42.16 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.73 Total: 4.20 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.86 Total: 1.52 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.07 Total: -51.46 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.08 Total: -14.88 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.04 -9.11 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.187 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds