Wall clock time and date at job start Tue Mar 31 2020 08:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47347 * 2 1 4 4 C 1.50694 * 109.47314 * 120.00118 * 2 1 3 5 5 C 1.38265 * 119.99248 * 88.11939 * 4 2 1 6 6 C 1.38222 * 120.02594 * 179.77103 * 5 4 2 7 7 C 1.38237 * 120.01207 * 0.50223 * 6 5 4 8 8 C 1.38327 * 119.98873 * 359.74825 * 7 6 5 9 9 Cl 1.73593 * 120.01527 * 180.02562 * 8 7 6 10 10 C 1.38198 * 119.99691 * 268.39166 * 4 2 1 11 11 N 1.46501 * 109.47109 * 240.00513 * 2 1 3 12 12 C 1.46503 * 119.99574 * 318.17665 * 11 2 1 13 13 C 1.34774 * 120.00289 * 138.17714 * 11 2 1 14 14 O 1.21584 * 120.00257 * 359.97438 * 13 11 2 15 15 N 1.34779 * 119.99704 * 179.97438 * 13 11 2 16 16 C 1.46503 * 119.99742 * 180.02562 * 15 13 11 17 17 C 1.50702 * 109.47012 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00055 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00181 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46978 * 59.99837 * 21 19 17 23 23 H 1.48505 * 109.47446 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47260 * 299.99837 * 21 19 17 25 25 H 1.09001 * 109.47004 * 299.99921 * 1 2 3 26 26 H 1.08995 * 109.47263 * 59.99401 * 1 2 3 27 27 H 1.08995 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.98546 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.99599 * 180.25716 * 6 5 4 30 30 H 1.08003 * 120.00420 * 179.72802 * 7 6 5 31 31 H 1.08002 * 120.00324 * 0.02562 * 10 4 2 32 32 H 1.09006 * 109.47298 * 96.18510 * 12 11 2 33 33 H 1.09002 * 109.47192 * 216.18462 * 12 11 2 34 34 H 1.08997 * 109.47188 * 336.18148 * 12 11 2 35 35 H 0.96998 * 120.00047 * 0.02562 * 15 13 11 36 36 H 1.09000 * 109.46918 * 300.00484 * 16 15 13 37 37 H 1.08997 * 109.47197 * 60.00344 * 16 15 13 38 38 H 0.97000 * 119.99975 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2257 -2.0793 1.2076 6 6 2.6910 -2.7309 2.3343 7 6 2.9534 -2.0157 3.4878 8 6 2.7552 -0.6470 3.5129 9 17 3.0851 0.2519 4.9608 10 6 2.2944 0.0056 2.3830 11 7 2.0183 -0.6905 -1.1962 12 6 1.3710 -1.9260 -1.6443 13 6 3.0630 -0.1892 -1.8845 14 8 3.5999 0.8365 -1.5130 15 7 3.5125 -0.8248 -2.9847 16 6 4.6484 -0.2801 -3.7326 17 6 4.9487 -1.1717 -4.9099 18 1 4.3532 -2.0558 -5.0834 19 6 5.9842 -0.8592 -5.7649 20 7 6.7097 0.2172 -5.5532 21 14 6.3569 -1.9647 -7.2237 22 1 5.1674 -2.0319 -8.1104 23 1 7.5083 -1.4126 -7.9819 24 1 6.6908 -3.3281 -6.7392 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.0163 -2.6391 0.3081 29 1 2.8458 -3.7996 2.3147 30 1 3.3127 -2.5257 4.3695 31 1 2.1387 1.0742 2.4022 32 1 0.6390 -1.6930 -2.4176 33 1 2.1227 -2.6043 -2.0482 34 1 0.8698 -2.4002 -0.8005 35 1 3.0839 -1.6428 -3.2814 36 1 4.4030 0.7206 -4.0883 37 1 5.5215 -0.2305 -3.0820 38 1 7.4385 0.4368 -6.1545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426430876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:11 Heat of formation + Delta-G solvation = -26.513756 kcal Electronic energy + Delta-G solvation = -21314.072714 eV Core-core repulsion = 17988.761138 eV Total energy + Delta-G solvation = -3325.311576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -41.53217 -40.14777 -37.75830 -36.94515 -36.15588 -34.53282 -33.09823 -31.64847 -30.36796 -29.05698 -28.01637 -25.17658 -24.20130 -23.62876 -22.18662 -20.75454 -19.56079 -18.17233 -18.01370 -17.45893 -16.77650 -16.65379 -16.41479 -16.00441 -15.32060 -15.07685 -14.95133 -14.61992 -14.49153 -14.18871 -14.03892 -13.73026 -13.44773 -13.28460 -13.13097 -12.87186 -12.72732 -12.66560 -12.34354 -12.23444 -12.12783 -12.07556 -11.76376 -11.48732 -11.13600 -10.78076 -10.04159 -9.89222 -9.67108 -9.43564 -8.27123 -6.44080 0.16338 0.26496 1.10978 1.44138 1.48899 1.56776 1.76881 2.22258 2.39664 2.63821 3.07745 3.27658 3.58369 3.86758 4.05723 4.10374 4.17612 4.24808 4.34087 4.46570 4.59695 4.66952 4.79079 4.87784 4.91189 4.96621 5.07914 5.19979 5.25223 5.27546 5.35406 5.44114 5.48112 5.60463 5.77888 5.82635 5.86178 6.11312 6.67348 7.19684 7.26427 7.71128 8.85111 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.003239 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.477789 B = 8643.171754 C = 8939.705678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.192 3.808 3 H 0.075 0.925 4 C -0.087 4.087 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.119 4.119 8 C -0.044 4.044 9 Cl -0.074 7.074 10 C -0.117 4.117 11 N -0.621 5.621 12 C 0.062 3.938 13 C 0.691 3.309 14 O -0.649 6.649 15 N -0.720 5.720 16 C 0.287 3.713 17 C -0.555 4.555 18 H 0.085 0.915 19 C 0.004 3.996 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.287 1.287 24 H -0.261 1.261 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.404 0.596 36 H -0.016 1.016 37 H -0.018 1.018 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 -9.262 16.254 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.087 3.913 3 H 0.093 0.907 4 C -0.089 4.089 5 C -0.138 4.138 6 C -0.122 4.122 7 C -0.137 4.137 8 C -0.070 4.070 9 Cl -0.045 7.045 10 C -0.136 4.136 11 N -0.358 5.358 12 C -0.079 4.079 13 C 0.392 3.608 14 O -0.531 6.531 15 N -0.375 5.375 16 C 0.163 3.837 17 C -0.592 4.592 18 H 0.103 0.897 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.809 3.191 22 H -0.185 1.185 23 H -0.212 1.212 24 H -0.185 1.185 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.166 0.834 29 H 0.178 0.822 30 H 0.168 0.832 31 H 0.149 0.851 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.241 0.759 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.775 -8.350 16.549 23.705 hybrid contribution 0.668 0.059 -0.628 0.918 sum -14.107 -8.292 15.921 22.831 Atomic orbital electron populations 1.22066 0.90334 1.04263 1.03449 1.19787 0.95970 0.95314 0.80184 0.90656 1.20306 0.99215 0.94859 0.94483 1.21665 0.98633 0.93744 0.99779 1.21474 0.97541 1.01587 0.91607 1.21342 1.00477 0.91584 1.00329 1.21013 1.04301 0.93198 0.88522 1.98360 1.94035 1.75415 1.36729 1.20962 1.00246 1.00673 0.91709 1.47040 1.32684 1.28059 1.28053 1.22190 0.98620 0.84976 1.02134 1.16295 0.80767 0.82984 0.80736 1.90826 1.62332 1.27900 1.72077 1.45393 1.35822 1.29086 1.27215 1.18381 0.82407 0.93269 0.89629 1.21555 1.16852 1.10582 1.10244 0.89744 1.26081 0.95182 0.96868 1.01461 1.70146 1.20369 1.27096 1.39413 0.85188 0.77940 0.78398 0.77557 1.18541 1.21216 1.18539 0.89836 0.91631 0.89786 0.83412 0.82222 0.83204 0.85089 0.90971 0.90995 0.87185 0.75877 0.99852 1.00024 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.84 71.98 0.64 -1.82 16 2 C 0.19 4.99 2.80 44.24 0.12 5.11 16 3 H 0.08 2.47 7.04 -2.38 -0.02 2.45 16 4 C -0.09 -2.12 5.01 -19.87 -0.10 -2.22 16 5 C -0.12 -2.49 8.98 22.27 0.20 -2.29 16 6 C -0.10 -1.85 10.05 22.27 0.22 -1.63 16 7 C -0.12 -2.27 9.83 22.29 0.22 -2.05 16 8 C -0.04 -0.99 6.32 22.32 0.14 -0.85 16 9 Cl -0.07 -1.58 28.96 -2.72 -0.08 -1.66 16 10 C -0.12 -2.87 9.48 22.29 0.21 -2.66 16 11 N -0.62 -18.17 2.49 -844.83 -2.10 -20.27 16 12 C 0.06 1.15 7.62 127.77 0.97 2.13 16 13 C 0.69 29.54 8.28 179.05 1.48 31.02 16 14 O -0.65 -34.57 15.77 -3.98 -0.06 -34.63 16 15 N -0.72 -31.58 5.42 -482.29 -2.61 -34.19 16 16 C 0.29 16.15 5.43 85.63 0.46 16.61 16 17 C -0.55 -30.31 9.28 25.60 0.24 -30.08 16 18 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 19 C 0.00 0.20 5.46 84.65 0.46 0.66 16 20 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 21 Si 0.99 42.14 29.54 68.60 2.03 44.16 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.07 6.76 -2.39 -0.02 1.06 16 28 H 0.15 2.55 4.45 -2.91 -0.01 2.54 16 29 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.33 6.70 -2.39 -0.02 1.32 16 34 H 0.11 1.32 5.00 -2.39 -0.01 1.31 16 35 H 0.40 14.49 6.19 -92.71 -0.57 13.92 16 36 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.88 331.08 3.25 -72.64 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.51 Total: 18.50 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.28 Total: 11.95 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.43 Total: -110.95 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.06 Total: -34.63 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -75.88 3.25 -72.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.124 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.46 seconds