Wall clock time and date at job start Tue Mar 31 2020 08:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46877 * 2 1 4 4 C 1.50699 * 109.46834 * 240.00291 * 2 1 3 5 5 C 1.38260 * 119.99623 * 115.43062 * 4 2 1 6 6 C 1.38224 * 120.02901 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00826 * 0.02562 * 6 5 4 8 8 C 1.38332 * 119.99030 * 359.76304 * 7 6 5 9 9 Cl 1.73606 * 120.01189 * 180.27632 * 8 7 6 10 10 C 1.38195 * 119.99341 * 295.44623 * 4 2 1 11 11 N 1.46500 * 109.47172 * 119.99958 * 2 1 3 12 12 C 1.46498 * 119.99616 * 53.82716 * 11 2 1 13 13 C 1.34769 * 119.99963 * 233.82411 * 11 2 1 14 14 O 1.21584 * 120.00211 * 0.02562 * 13 11 2 15 15 N 1.34778 * 119.99803 * 180.02562 * 13 11 2 16 16 C 1.46502 * 119.99883 * 180.02562 * 15 13 11 17 17 C 1.50701 * 109.47214 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99787 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00026 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00309 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99786 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47227 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47242 * 120.00022 * 21 19 17 24 24 H 1.48507 * 109.46895 * 239.99911 * 21 19 17 25 25 H 1.09002 * 109.47104 * 59.99606 * 1 2 3 26 26 H 1.08996 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46954 * 299.99978 * 1 2 3 28 28 H 1.08006 * 119.98470 * 0.02562 * 5 4 2 29 29 H 1.07995 * 119.99310 * 180.02562 * 6 5 4 30 30 H 1.08005 * 120.00078 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.00682 * 359.97438 * 10 4 2 32 32 H 1.08999 * 109.47162 * 89.06413 * 12 11 2 33 33 H 1.09010 * 109.47078 * 209.06067 * 12 11 2 34 34 H 1.08993 * 109.47336 * 329.06448 * 12 11 2 35 35 H 0.97003 * 120.00219 * 359.97438 * 15 13 11 36 36 H 1.08999 * 109.47234 * 300.00348 * 16 15 13 37 37 H 1.09008 * 109.46920 * 60.00435 * 16 15 13 38 38 H 0.97003 * 120.00287 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.7475 -0.0140 -2.1871 6 6 3.2089 -0.6649 -3.3158 7 6 2.9551 -2.0127 -3.4889 8 6 2.2434 -2.7110 -2.5300 9 17 1.9305 -4.4052 -2.7434 10 6 1.7777 -2.0577 -1.4027 11 7 2.0184 -0.6906 1.1962 12 6 1.5565 -2.0476 1.4983 13 6 2.8925 -0.0775 2.0185 14 8 3.2755 1.0489 1.7680 15 7 3.3422 -0.7131 3.1187 16 6 4.2920 -0.0464 4.0130 17 6 4.6327 -0.9645 5.1585 18 1 4.1867 -1.9465 5.2145 19 6 5.5138 -0.5508 6.1349 20 7 6.0566 0.6452 6.0670 21 14 5.9367 -1.6891 7.5544 22 1 5.1982 -2.9682 7.4001 23 1 7.3972 -1.9573 7.5556 24 1 5.5504 -1.0464 8.8362 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.9464 1.0390 -2.0521 29 1 3.7679 -0.1205 -4.0625 30 1 3.3161 -2.5213 -4.3706 31 1 1.2192 -2.6017 -0.6553 32 1 2.2145 -2.7710 1.0167 33 1 1.5713 -2.2048 2.5769 34 1 0.5403 -2.1768 1.1261 35 1 3.0364 -1.6116 3.3188 36 1 5.1994 0.1992 3.4613 37 1 3.8443 0.8683 4.4018 38 1 6.6767 0.9361 6.7538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:28 Heat of formation + Delta-G solvation = -8.418844 kcal Electronic energy + Delta-G solvation = -21341.109071 eV Core-core repulsion = 18016.582150 eV Total energy + Delta-G solvation = -3324.526922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28489 -38.96952 -36.75288 -35.82422 -34.22849 -32.73269 -31.64475 -30.94557 -29.42874 -27.20934 -26.77707 -23.88927 -22.84731 -22.52875 -20.91313 -19.23753 -18.06807 -17.17103 -16.26787 -16.04974 -15.60159 -15.24544 -15.12588 -14.67732 -14.03685 -13.97141 -13.69519 -13.58917 -13.23424 -12.99456 -12.46364 -12.33485 -12.27743 -11.87912 -11.82015 -11.70667 -11.54544 -11.46085 -11.14756 -10.93988 -10.90207 -10.83716 -10.28151 -9.40733 -9.34066 -9.06322 -8.83943 -8.72707 -8.46390 -7.74925 -6.14618 -4.21045 0.99539 1.08342 1.94737 3.09553 3.24675 3.31935 3.35067 3.55087 3.88119 4.32478 4.47049 4.62111 4.75094 4.89763 5.05291 5.10493 5.16514 5.21569 5.22247 5.24186 5.48802 5.52003 5.54950 5.74012 5.77682 5.87895 6.01854 6.06360 6.16756 6.38848 6.61890 6.73443 7.12457 7.51693 7.53732 7.58132 7.85062 8.02527 8.76232 8.90056 9.31420 9.48034 10.95691 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.003462 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.572698 B = 8085.334249 C = 8614.574015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.193 3.807 3 H 0.113 0.887 4 C -0.076 4.076 5 C -0.099 4.099 6 C -0.107 4.107 7 C -0.115 4.115 8 C -0.036 4.036 9 Cl -0.076 7.076 10 C -0.104 4.104 11 N -0.633 5.633 12 C 0.073 3.927 13 C 0.697 3.303 14 O -0.598 6.598 15 N -0.727 5.727 16 C 0.266 3.734 17 C -0.541 4.541 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.387 0.613 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 -6.745 -18.343 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.088 3.912 3 H 0.131 0.869 4 C -0.077 4.077 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.062 4.062 9 Cl -0.047 7.047 10 C -0.123 4.123 11 N -0.372 5.372 12 C -0.070 4.070 13 C 0.398 3.602 14 O -0.477 6.477 15 N -0.380 5.380 16 C 0.145 3.855 17 C -0.579 4.579 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.221 0.779 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.039 -5.929 -18.366 22.233 hybrid contribution 0.215 -1.308 0.857 1.578 sum -10.824 -7.237 -17.509 21.819 Atomic orbital electron populations 1.22165 0.94201 1.02415 1.02816 1.19710 0.93646 0.97287 0.80508 0.86909 1.20279 0.97642 0.93531 0.96294 1.21249 0.96363 1.00767 0.93436 1.21107 0.99627 0.93803 0.98021 1.21038 0.98947 0.94593 0.98795 1.20902 1.02655 0.85267 0.97415 1.98366 1.94677 1.14535 1.97171 1.21127 1.00429 0.94383 0.96348 1.47061 1.48411 1.16406 1.25307 1.21821 0.99658 0.83884 1.01663 1.16065 0.79173 0.84503 0.80446 1.90848 1.62730 1.18506 1.75641 1.45863 1.48554 1.19169 1.24398 1.18996 0.86731 0.92995 0.86811 1.21255 1.27435 1.01444 1.07803 0.91966 1.24935 0.95545 0.95329 0.98165 1.69987 1.29646 1.18027 1.34610 0.86369 0.78264 0.80542 0.81768 1.19659 1.20806 1.20806 0.91294 0.92195 0.91408 0.85032 0.85037 0.85186 0.84588 0.92883 0.90957 0.91095 0.77911 0.95742 0.95719 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.89 37.16 0.33 -1.26 16 2 C 0.19 2.54 2.95 -69.08 -0.20 2.34 16 3 H 0.11 1.71 6.66 -51.93 -0.35 1.36 16 4 C -0.08 -0.92 4.96 -104.63 -0.52 -1.43 16 5 C -0.10 -1.12 9.67 -39.58 -0.38 -1.51 16 6 C -0.11 -1.05 10.05 -39.59 -0.40 -1.45 16 7 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 8 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 9 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.28 16 10 C -0.10 -1.17 7.93 -39.55 -0.31 -1.49 16 11 N -0.63 -9.77 2.75 -181.01 -0.50 -10.27 16 12 C 0.07 0.87 8.11 59.85 0.49 1.35 16 13 C 0.70 14.60 8.28 -86.92 -0.72 13.88 16 14 O -0.60 -14.83 15.68 5.29 0.08 -14.75 16 15 N -0.73 -15.88 5.42 -66.41 -0.36 -16.24 16 16 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 17 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 18 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.53 6.03 -51.93 -0.31 0.21 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.13 1.38 7.95 -52.48 -0.42 0.96 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.14 1.38 4.97 -52.49 -0.26 1.12 16 32 H 0.05 0.61 7.10 -51.93 -0.37 0.24 16 33 H 0.07 0.85 6.31 -51.92 -0.33 0.53 16 34 H 0.07 0.64 5.44 -51.93 -0.28 0.36 16 35 H 0.39 7.34 6.03 -40.82 -0.25 7.09 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -32.71 329.20 -9.04 -41.75 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.63 Total: 4.44 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.80 Total: 1.95 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.12 Total: -52.00 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.08 Total: -14.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.71 -9.04 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.332 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds