Wall clock time and date at job start Tue Mar 31 2020 07:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46995 * 2 1 4 4 N 1.46499 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00204 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99782 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 3 8 8 N 1.46496 * 109.47364 * 179.97438 * 7 5 4 9 9 C 1.38897 * 120.00588 * 179.97438 * 8 7 5 10 10 C 1.39541 * 119.84227 * 359.72807 * 9 8 7 11 11 C 1.36348 * 120.17183 * 180.27356 * 10 9 8 12 12 C 1.40902 * 119.85658 * 0.02562 * 11 10 9 13 13 C 1.41128 * 120.15167 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00672 * 24.59295 * 13 12 11 15 15 C 1.39868 * 119.99586 * 204.59864 * 13 12 11 16 16 N 1.30907 * 119.99886 * 17.96800 * 15 13 12 17 17 Si 1.86805 * 119.99790 * 197.96428 * 15 13 12 18 18 H 1.48493 * 109.46757 * 59.99968 * 17 15 13 19 19 H 1.48498 * 109.46836 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46966 * 300.00314 * 17 15 13 21 21 C 1.40866 * 119.69894 * 359.97438 * 12 11 10 22 22 C 1.36438 * 119.82555 * 0.02562 * 21 12 11 23 23 Cl 1.73594 * 119.93163 * 179.97438 * 22 21 12 24 24 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46945 * 299.99621 * 1 2 3 26 26 H 1.08998 * 109.47322 * 59.99977 * 1 2 3 27 27 H 1.08999 * 109.46740 * 239.99912 * 2 1 3 28 28 H 1.08995 * 109.46840 * 119.99852 * 2 1 3 29 29 H 1.09005 * 109.47282 * 59.99935 * 3 2 1 30 30 H 1.09007 * 109.46932 * 299.99985 * 3 2 1 31 31 H 0.97001 * 119.99751 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.47294 * 59.99552 * 7 5 4 33 33 H 1.09007 * 109.47076 * 299.99507 * 7 5 4 34 34 H 0.97008 * 119.99725 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.91960 * 0.26764 * 10 9 8 36 36 H 1.08000 * 120.07068 * 179.97438 * 11 10 9 37 37 H 0.97008 * 119.99624 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.08919 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5724 3.6600 0.0002 7 6 5.6859 2.6097 -0.0003 8 7 6.1742 3.9909 -0.0004 9 6 7.5398 4.2448 0.0001 10 6 8.4437 3.1818 0.0064 11 6 9.7856 3.4233 0.0126 12 6 10.2595 4.7503 0.0130 13 6 11.6471 5.0074 0.0188 14 1 12.3348 4.2692 -0.3665 15 6 12.1318 6.2184 0.5237 16 7 11.3750 6.9544 1.2979 17 14 13.8589 6.7854 0.0934 18 1 13.9774 6.9374 -1.3790 19 1 14.1296 8.0897 0.7497 20 1 14.8427 5.7793 0.5679 21 6 9.3419 5.8190 0.0066 22 6 8.0018 5.5628 0.0005 23 17 6.8685 6.8778 -0.0067 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9900 0.6025 -0.0006 32 1 6.0492 2.0962 -0.8904 33 1 6.0492 2.0956 0.8896 34 1 5.5438 4.7282 -0.0008 35 1 8.0796 2.1650 0.0066 36 1 10.4838 2.5993 0.0179 37 1 11.7113 7.7942 1.6484 38 1 9.6982 6.8386 0.0065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453132012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:58 Heat of formation + Delta-G solvation = -36.353703 kcal Electronic energy + Delta-G solvation = -20493.199367 eV Core-core repulsion = 17167.461099 eV Total energy + Delta-G solvation = -3325.738268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85215 -38.06859 -36.11392 -35.32021 -34.87122 -33.04645 -32.80087 -29.69793 -29.13239 -27.59760 -25.72601 -23.97108 -22.03253 -21.45208 -20.55925 -20.07110 -17.65251 -17.14060 -16.45892 -16.14748 -15.56873 -15.40495 -15.08406 -14.68422 -14.19415 -13.65044 -13.44684 -13.20616 -12.93328 -12.77298 -12.62898 -12.43111 -12.28313 -12.05789 -11.69602 -11.52469 -11.27027 -11.14484 -11.03757 -10.77237 -10.37953 -10.22962 -9.91038 -9.68083 -9.59569 -9.37468 -9.26556 -8.67994 -7.50560 -6.75832 -6.51633 -4.16614 2.56412 2.74583 2.87330 2.93800 3.11379 3.13180 3.23634 3.38784 3.98505 4.33521 4.45581 4.58406 4.60765 4.71312 4.87307 5.23580 5.25509 5.41083 5.47189 5.52040 5.62314 5.64579 5.73957 5.81998 6.04316 6.22565 6.44247 6.82207 6.94386 7.13696 7.26184 7.31542 7.40955 7.59996 7.89872 8.09615 8.14161 8.27166 8.53151 8.64584 8.91059 8.94160 10.26253 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.002898 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.564540 B = 9659.990456 C =10361.550681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.118 3.882 4 N -0.734 5.734 5 C 0.509 3.491 6 O -0.533 6.533 7 C 0.121 3.879 8 N -0.748 5.748 9 C 0.099 3.901 10 C -0.150 4.150 11 C -0.184 4.184 12 C 0.084 3.916 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.798 5.798 17 Si 0.906 3.094 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.118 4.118 22 C -0.060 4.060 23 Cl -0.120 7.120 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.402 0.598 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.403 0.597 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.281 0.719 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.370 -11.584 -1.849 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.388 5.388 5 C 0.295 3.705 6 O -0.409 6.409 7 C -0.008 4.008 8 N -0.388 5.388 9 C 0.001 3.999 10 C -0.173 4.173 11 C -0.205 4.205 12 C 0.081 3.919 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.424 5.424 17 Si 0.731 3.269 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.139 4.139 22 C -0.089 4.089 23 Cl -0.092 7.092 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.236 0.764 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.241 0.759 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.909 -10.648 -1.699 17.599 hybrid contribution 0.660 0.207 -0.037 0.693 sum -13.248 -10.441 -1.736 16.957 Atomic orbital electron populations 1.21680 0.94572 1.02132 1.02389 1.21739 0.96991 0.95846 1.02806 1.21394 0.79594 0.97095 1.02507 1.45947 1.07323 1.08744 1.76738 1.20909 0.90617 0.83609 0.75345 1.90695 1.70161 1.31328 1.48684 1.20759 0.89094 0.88352 1.02644 1.43681 1.04108 1.04301 1.86752 1.16951 0.82768 0.91452 1.08735 1.19810 0.93136 0.95037 1.09304 1.20638 0.93547 0.96444 1.09828 1.17380 0.93338 0.89881 0.91323 1.19324 0.92104 1.01210 1.36663 0.90454 1.25861 0.99615 0.96098 0.92708 1.69829 1.37892 1.12083 1.22641 0.86400 0.82274 0.78333 0.79878 1.18928 1.20465 1.19157 1.20912 0.88686 1.01023 1.03270 1.20052 0.90218 0.84793 1.13882 1.98245 1.63136 1.50070 1.97730 0.92179 0.92330 0.92330 0.91229 0.91222 0.91500 0.91512 0.76389 0.90326 0.90309 0.75937 0.88459 0.88335 0.90849 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.14 -0.78 6.05 -26.73 -0.16 -0.95 16 3 C 0.12 1.03 5.67 -4.04 -0.02 1.01 16 4 N -0.73 -7.02 5.56 -60.29 -0.33 -7.36 16 5 C 0.51 7.06 7.90 -10.99 -0.09 6.97 16 6 O -0.53 -9.59 15.67 5.56 0.09 -9.50 16 7 C 0.12 1.72 5.37 -5.20 -0.03 1.69 16 8 N -0.75 -14.25 5.63 -59.64 -0.34 -14.58 16 9 C 0.10 2.18 6.67 -83.64 -0.56 1.62 16 10 C -0.15 -3.17 9.23 -39.78 -0.37 -3.54 16 11 C -0.18 -4.28 9.74 -39.25 -0.38 -4.66 16 12 C 0.08 2.19 5.57 -106.80 -0.60 1.59 16 13 C -0.46 -12.02 9.03 -37.88 -0.34 -12.36 16 14 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 15 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 16 N -0.80 -20.75 10.96 55.54 0.61 -20.14 16 17 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.12 -3.07 8.40 -39.24 -0.33 -3.40 16 22 C -0.06 -1.42 6.30 -39.70 -0.25 -1.67 16 23 Cl -0.12 -2.58 27.55 -51.86 -1.43 -4.01 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.40 2.60 8.47 -40.82 -0.35 2.25 16 32 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 33 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 34 H 0.40 8.13 6.07 -40.82 -0.25 7.88 16 35 H 0.10 1.70 6.68 -52.49 -0.35 1.35 16 36 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 38 H 0.13 3.57 6.16 -52.49 -0.32 3.25 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -29.82 335.76 -9.24 -39.07 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.02 Total: 10.15 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.84 Total: -12.35 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.06 Total: -42.09 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -1.43 Total: -4.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.82 -9.24 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453132012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.712 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds