Wall clock time and date at job start Tue Mar 31 2020 07:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46995 * 2 1 4 4 N 1.46499 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00204 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99782 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 3 8 8 N 1.46496 * 109.47364 * 179.97438 * 7 5 4 9 9 C 1.38897 * 120.00588 * 179.97438 * 8 7 5 10 10 C 1.39541 * 119.84227 * 359.72807 * 9 8 7 11 11 C 1.36348 * 120.17183 * 180.27356 * 10 9 8 12 12 C 1.40902 * 119.85658 * 0.02562 * 11 10 9 13 13 C 1.41128 * 120.15167 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00672 * 24.59295 * 13 12 11 15 15 C 1.39868 * 119.99586 * 204.59864 * 13 12 11 16 16 N 1.30907 * 119.99886 * 17.96800 * 15 13 12 17 17 Si 1.86805 * 119.99790 * 197.96428 * 15 13 12 18 18 H 1.48493 * 109.46757 * 59.99968 * 17 15 13 19 19 H 1.48498 * 109.46836 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46966 * 300.00314 * 17 15 13 21 21 C 1.40866 * 119.69894 * 359.97438 * 12 11 10 22 22 C 1.36438 * 119.82555 * 0.02562 * 21 12 11 23 23 Cl 1.73594 * 119.93163 * 179.97438 * 22 21 12 24 24 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46945 * 299.99621 * 1 2 3 26 26 H 1.08998 * 109.47322 * 59.99977 * 1 2 3 27 27 H 1.08999 * 109.46740 * 239.99912 * 2 1 3 28 28 H 1.08995 * 109.46840 * 119.99852 * 2 1 3 29 29 H 1.09005 * 109.47282 * 59.99935 * 3 2 1 30 30 H 1.09007 * 109.46932 * 299.99985 * 3 2 1 31 31 H 0.97001 * 119.99751 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.47294 * 59.99552 * 7 5 4 33 33 H 1.09007 * 109.47076 * 299.99507 * 7 5 4 34 34 H 0.97008 * 119.99725 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.91960 * 0.26764 * 10 9 8 36 36 H 1.08000 * 120.07068 * 179.97438 * 11 10 9 37 37 H 0.97008 * 119.99624 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.08919 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5724 3.6600 0.0002 7 6 5.6859 2.6097 -0.0003 8 7 6.1742 3.9909 -0.0004 9 6 7.5398 4.2448 0.0001 10 6 8.4437 3.1818 0.0064 11 6 9.7856 3.4233 0.0126 12 6 10.2595 4.7503 0.0130 13 6 11.6471 5.0074 0.0188 14 1 12.3348 4.2692 -0.3665 15 6 12.1318 6.2184 0.5237 16 7 11.3750 6.9544 1.2979 17 14 13.8589 6.7854 0.0934 18 1 13.9774 6.9374 -1.3790 19 1 14.1296 8.0897 0.7497 20 1 14.8427 5.7793 0.5679 21 6 9.3419 5.8190 0.0066 22 6 8.0018 5.5628 0.0005 23 17 6.8685 6.8778 -0.0067 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9900 0.6025 -0.0006 32 1 6.0492 2.0962 -0.8904 33 1 6.0492 2.0956 0.8896 34 1 5.5438 4.7282 -0.0008 35 1 8.0796 2.1650 0.0066 36 1 10.4838 2.5993 0.0179 37 1 11.7113 7.7942 1.6484 38 1 9.6982 6.8386 0.0065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453132012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:58 Heat of formation + Delta-G solvation = -55.080894 kcal Electronic energy + Delta-G solvation = -20494.011439 eV Core-core repulsion = 17167.461099 eV Total energy + Delta-G solvation = -3326.550340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96966 -39.76233 -37.10594 -37.01195 -36.40597 -34.69221 -33.62468 -31.37979 -30.83573 -28.90119 -26.80237 -25.52626 -23.13529 -22.57507 -22.22092 -21.30346 -19.30157 -18.59135 -17.63314 -17.10870 -16.99303 -16.83766 -16.15130 -15.92618 -15.89536 -14.91463 -14.63036 -14.59299 -14.46881 -13.94081 -13.81223 -13.75616 -13.47150 -13.27598 -12.94590 -12.82186 -12.78995 -12.50549 -12.09876 -12.04000 -11.91770 -11.75076 -11.49909 -11.37753 -11.12085 -11.02872 -10.43141 -10.16039 -9.31876 -8.58361 -8.24671 -6.05723 0.92033 1.09118 1.42784 1.50143 1.53038 1.57398 1.59757 1.99783 2.27170 2.77638 2.91622 3.73178 3.74239 3.93506 4.07458 4.29716 4.35398 4.46904 4.48606 4.66442 4.72776 4.75505 4.86916 5.06089 5.13241 5.15591 5.24925 5.30688 5.33763 5.44471 5.47647 5.58036 5.77645 6.05516 6.26994 6.41330 6.58689 6.74224 6.96560 7.03175 7.11045 7.15979 8.44800 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.002898 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.564540 B = 9659.990456 C =10361.550681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.712 5.712 5 C 0.509 3.491 6 O -0.582 6.582 7 C 0.114 3.886 8 N -0.751 5.751 9 C 0.113 3.887 10 C -0.146 4.146 11 C -0.183 4.183 12 C 0.047 3.953 13 C -0.496 4.496 14 H 0.080 0.920 15 C 0.031 3.969 16 N -0.836 5.836 17 Si 0.976 3.024 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.140 4.140 22 C -0.083 4.083 23 Cl -0.109 7.109 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.421 0.579 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.396 0.604 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.283 0.717 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 -14.292 -2.137 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.008 4.008 4 N -0.365 5.365 5 C 0.295 3.705 6 O -0.462 6.462 7 C -0.014 4.014 8 N -0.389 5.389 9 C 0.013 3.987 10 C -0.168 4.168 11 C -0.203 4.203 12 C 0.044 3.956 13 C -0.526 4.526 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.463 5.463 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.182 1.182 21 C -0.161 4.161 22 C -0.113 4.113 23 Cl -0.081 7.081 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.258 0.742 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.233 0.767 35 H 0.161 0.839 36 H 0.133 0.867 37 H 0.094 0.906 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.480 -13.446 -1.990 19.860 hybrid contribution 0.592 0.917 0.046 1.093 sum -13.887 -12.529 -1.944 18.804 Atomic orbital electron populations 1.21702 0.94282 1.02854 1.02101 1.21690 0.97121 0.93605 1.03933 1.21494 0.78851 0.99113 1.01378 1.45795 1.07785 1.08370 1.74548 1.20894 0.90545 0.83961 0.75057 1.90687 1.70870 1.33241 1.51356 1.21085 0.89475 0.85930 1.04889 1.43845 1.02763 1.06469 1.85871 1.17146 0.84342 0.90898 1.06304 1.20192 0.92045 0.96902 1.07699 1.20929 0.95036 0.95804 1.08517 1.17733 0.93748 0.91235 0.92896 1.19584 0.92567 1.02376 1.38115 0.90236 1.26673 1.03565 0.95858 0.92104 1.69915 1.39855 1.12623 1.23922 0.85334 0.77427 0.77999 0.79434 1.18747 1.19977 1.18202 1.20748 0.89819 1.00095 1.05429 1.20226 0.90048 0.86295 1.14750 1.98233 1.62373 1.49777 1.97709 0.90920 0.92705 0.92652 0.90021 0.90085 0.92759 0.92682 0.74178 0.87635 0.87897 0.76740 0.83938 0.86665 0.90639 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 71.98 0.71 -0.58 16 2 C -0.13 -1.09 6.05 30.60 0.19 -0.91 16 3 C 0.12 1.81 5.67 86.38 0.49 2.30 16 4 N -0.71 -11.59 5.56 -463.06 -2.57 -14.16 16 5 C 0.51 12.98 7.90 87.66 0.69 13.68 16 6 O -0.58 -20.52 15.67 -3.03 -0.05 -20.57 16 7 C 0.11 2.84 5.37 85.63 0.46 3.30 16 8 N -0.75 -27.16 5.63 -342.60 -1.93 -29.09 16 9 C 0.11 4.80 6.67 38.68 0.26 5.06 16 10 C -0.15 -5.75 9.23 22.14 0.20 -5.55 16 11 C -0.18 -8.27 9.74 22.48 0.22 -8.05 16 12 C 0.05 2.50 5.57 -21.27 -0.12 2.38 16 13 C -0.50 -26.35 9.03 23.37 0.21 -26.14 16 14 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 15 C 0.03 1.59 5.13 85.23 0.44 2.03 16 16 N -0.84 -45.06 10.96 21.82 0.24 -44.82 16 17 Si 0.98 39.00 29.60 68.60 2.03 41.03 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 C -0.14 -7.49 8.40 22.49 0.19 -7.30 16 22 C -0.08 -3.99 6.30 22.19 0.14 -3.85 16 23 Cl -0.11 -4.77 27.55 -2.72 -0.07 -4.85 16 24 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.42 3.73 8.47 -92.71 -0.79 2.94 16 32 H 0.11 2.15 7.94 -2.38 -0.02 2.13 16 33 H 0.10 2.16 7.92 -2.38 -0.02 2.14 16 34 H 0.40 15.63 6.07 -92.70 -0.56 15.07 16 35 H 0.14 4.25 6.68 -2.91 -0.02 4.23 16 36 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.28 14.08 8.30 -92.70 -0.77 13.31 16 38 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 Total: -1.00 -67.08 335.76 1.47 -65.61 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.25 Total: 30.49 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 4.08 Total: -23.63 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -4.26 Total: -88.08 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 17 Polarization: -4.77 SS G_CDS: -0.07 Total: -4.85 kcal Total: -67.08 1.47 -65.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453132012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.526 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds