Wall clock time and date at job start Tue Mar 31 2020 07:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47154 * 347.81121 * 3 2 1 5 5 C 1.36785 * 119.99609 * 88.77842 * 4 3 2 6 6 H 1.07998 * 120.00028 * 160.07859 * 5 4 3 7 7 C 1.39076 * 120.00129 * 340.07454 * 5 4 3 8 8 N 1.31352 * 120.00029 * 355.74798 * 7 5 4 9 9 Si 1.86802 * 119.99969 * 175.74874 * 7 5 4 10 10 H 1.48496 * 109.47069 * 59.99797 * 9 7 5 11 11 H 1.48504 * 109.47227 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47044 * 299.99755 * 9 7 5 13 13 C 1.34775 * 119.99988 * 268.77656 * 4 3 2 14 14 O 1.21706 * 119.99510 * 185.19775 * 13 4 3 15 15 C 1.46756 * 119.99955 * 5.19870 * 13 4 3 16 16 N 1.37166 * 127.36367 * 103.27188 * 15 13 4 17 17 H 0.96998 * 125.90224 * 0.02734 * 16 15 13 18 18 N 1.28615 * 108.19063 * 180.29539 * 16 15 13 19 19 N 1.28446 * 111.25962 * 359.55188 * 18 16 15 20 20 C 1.34169 * 109.41859 * 0.45164 * 19 18 16 21 21 C 1.48153 * 127.07434 * 179.71628 * 20 19 18 22 22 C 1.39471 * 120.13342 * 136.90759 * 21 20 19 23 23 C 1.37985 * 119.86170 * 179.67908 * 22 21 20 24 24 C 1.38343 * 120.13581 * 0.61659 * 23 22 21 25 25 C 1.38344 * 120.26819 * 359.67813 * 24 23 22 26 26 C 1.37992 * 120.13335 * 0.02562 * 25 24 23 27 27 H 4.40638 * 5.51402 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46863 * 227.81571 * 3 2 1 29 29 H 1.08994 * 109.47566 * 107.81316 * 3 2 1 30 30 H 0.97001 * 119.99885 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.06434 * 359.97438 * 22 21 20 32 32 H 1.08002 * 119.92743 * 180.34029 * 23 22 21 33 33 H 1.07998 * 119.86713 * 179.69932 * 24 23 22 34 34 H 1.08002 * 119.93747 * 180.02562 * 25 24 23 35 35 H 1.08000 * 120.06849 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3493 0.2916 5 6 3.3395 -2.2377 -0.7281 6 1 3.9836 -3.0917 -0.5792 7 6 2.7180 -2.0412 -1.9567 8 7 1.8699 -1.0505 -2.1127 9 14 3.0895 -3.1864 -3.3850 10 1 2.7202 -4.5761 -3.0143 11 1 2.3053 -2.7656 -4.5738 12 1 4.5390 -3.1274 -3.7027 13 6 3.3833 -1.7157 1.5646 14 8 3.8782 -2.8025 1.7995 15 6 3.0567 -0.8042 2.6675 16 7 1.9879 -0.8826 3.5235 17 1 1.2973 -1.5636 3.5103 18 7 2.0565 0.1061 4.3433 19 7 3.0894 0.8333 4.1103 20 6 3.7660 0.3264 3.0685 21 6 5.0110 0.8593 2.4676 22 6 6.0436 -0.0079 2.1116 23 6 7.1980 0.4938 1.5462 24 6 7.3375 1.8552 1.3441 25 6 6.3192 2.7211 1.7008 26 6 5.1575 2.2308 2.2614 27 1 -1.0497 -0.0004 -0.0001 28 1 3.0090 0.6909 0.7615 29 1 3.0093 0.3152 -0.9783 30 1 1.4361 -0.9137 -2.9695 31 1 5.9379 -1.0705 2.2737 32 1 7.9961 -0.1774 1.2651 33 1 8.2448 2.2437 0.9057 34 1 6.4336 3.7830 1.5402 35 1 4.3631 2.9077 2.5391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:44 Heat of formation + Delta-G solvation = 158.479651 kcal Electronic energy + Delta-G solvation = -23560.301487 eV Core-core repulsion = 20141.904333 eV Total energy + Delta-G solvation = -3418.397154 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.101 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.77038 -38.87244 -38.51422 -35.44985 -33.44399 -32.43557 -31.76404 -31.41705 -30.67467 -29.22136 -26.67587 -25.39237 -23.52925 -23.21920 -22.00553 -21.27406 -19.93261 -18.15275 -17.91938 -16.80509 -16.55019 -16.33796 -15.66262 -15.23047 -14.93791 -14.40107 -14.29215 -14.01600 -13.40471 -13.18240 -13.13825 -12.64017 -12.50243 -12.41140 -11.82906 -11.58423 -11.19495 -11.08467 -11.04265 -10.81565 -10.71634 -10.54961 -10.34028 -9.63721 -9.49699 -9.25505 -9.03065 -8.80970 -8.69175 -8.17154 -8.11451 -6.51214 -4.16173 1.23183 1.66276 1.79557 2.63195 2.76307 3.06258 3.12258 3.15329 3.49683 3.68685 3.95904 4.04959 4.06809 4.47902 4.64059 4.84986 5.08814 5.18138 5.28948 5.35281 5.40156 5.48745 5.65139 5.67852 5.84693 5.99521 6.20110 6.25395 6.28866 6.69185 6.72006 6.73974 6.81299 6.96014 7.03075 7.18856 7.30367 7.72187 8.12570 8.66445 8.75868 8.80716 9.02233 9.52694 10.42103 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.006899 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.568941 B = 4057.325896 C = 4949.355432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.096 4.096 3 C 0.230 3.770 4 N -0.403 5.403 5 C -0.312 4.312 6 H 0.110 0.890 7 C 0.035 3.965 8 N -0.860 5.860 9 Si 0.936 3.064 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.498 3.502 14 O -0.569 6.569 15 C 0.013 3.987 16 N -0.368 5.368 17 H 0.452 0.548 18 N -0.080 5.080 19 N -0.253 5.253 20 C 0.030 3.970 21 C -0.005 4.005 22 C -0.088 4.088 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.090 4.090 27 H 0.198 0.802 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.275 0.725 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 5.707 3.082 7.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.099 4.099 3 C 0.107 3.893 4 N -0.119 5.119 5 C -0.440 4.440 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.497 5.497 9 Si 0.762 3.238 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.195 1.195 13 C 0.283 3.717 14 O -0.453 6.453 15 C -0.125 4.125 16 N -0.090 5.090 17 H 0.298 0.702 18 N -0.060 5.060 19 N -0.120 5.120 20 C -0.108 4.108 21 C -0.007 4.007 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.109 4.109 27 H 0.215 0.785 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.499 6.022 4.223 8.145 hybrid contribution -0.436 -1.444 -1.711 2.281 sum 3.063 4.579 2.512 6.054 Atomic orbital electron populations 1.24193 0.95295 1.02444 1.07244 1.22893 0.94056 0.98036 0.94871 1.18485 0.84619 0.83821 1.02353 1.43495 1.53207 1.11182 1.04031 1.19736 1.27891 1.06871 0.89475 0.87252 1.25485 0.94633 0.97474 0.99430 1.69895 1.25326 1.28988 1.25495 0.85831 0.78784 0.79965 0.79241 1.19621 1.20723 1.19474 1.16392 0.88219 0.85748 0.81328 1.90718 1.49004 1.22510 1.83037 1.22900 0.91556 0.99866 0.98190 1.45215 1.20304 1.21821 1.21667 0.70187 1.77937 1.16525 0.96651 1.14927 1.74959 1.01211 1.21992 1.13874 1.20670 0.98391 0.94505 0.97269 1.17573 0.90297 0.93266 0.99541 1.21346 0.92470 1.00034 0.96898 1.21026 0.97674 0.95428 0.99350 1.21194 0.98860 0.93548 0.99777 1.21007 0.93673 0.99659 0.99908 1.21160 0.97872 0.93889 0.97997 0.78504 0.92051 0.86342 0.91413 0.85331 0.85779 0.86182 0.85922 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.60 19.21 29.55 0.57 -5.03 16 2 C -0.10 -2.14 11.03 -37.12 -0.41 -2.55 16 3 C 0.23 5.07 4.96 -6.82 -0.03 5.04 16 4 N -0.40 -9.58 2.58 -119.40 -0.31 -9.89 16 5 C -0.31 -7.91 9.38 -15.03 -0.14 -8.05 16 6 H 0.11 2.87 7.30 -52.49 -0.38 2.48 16 7 C 0.04 0.85 5.27 -17.45 -0.09 0.75 16 8 N -0.86 -20.86 8.34 55.50 0.46 -20.40 16 9 Si 0.94 19.22 29.56 -169.99 -5.02 14.20 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 13 C 0.50 11.52 6.26 -12.82 -0.08 11.44 16 14 O -0.57 -14.71 16.76 5.18 0.09 -14.62 16 15 C 0.01 0.27 5.77 -81.62 -0.47 -0.20 16 16 N -0.37 -6.51 7.06 33.67 0.24 -6.27 16 17 H 0.45 6.63 8.96 -190.36 -1.71 4.92 16 18 N -0.08 -1.46 13.30 60.35 0.80 -0.66 16 19 N -0.25 -4.83 12.38 33.48 0.41 -4.42 16 20 C 0.03 0.58 5.77 -82.35 -0.48 0.10 16 21 C 0.00 -0.08 5.09 -104.91 -0.53 -0.62 16 22 C -0.09 -1.51 9.15 -39.21 -0.36 -1.87 16 23 C -0.12 -1.66 10.03 -39.64 -0.40 -2.06 16 24 C -0.12 -1.45 10.04 -39.50 -0.40 -1.85 16 25 C -0.12 -1.59 10.03 -39.63 -0.40 -1.99 16 26 C -0.09 -1.36 9.78 -39.22 -0.38 -1.74 16 27 H 0.20 3.32 7.80 -54.10 -0.42 2.89 16 28 H 0.06 1.27 5.44 -51.93 -0.28 0.98 16 29 H 0.12 2.74 6.56 -51.93 -0.34 2.40 16 30 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.13 2.40 7.48 -52.49 -0.39 2.01 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -29.27 317.16 -6.50 -35.77 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.35 Total: 10.14 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.60 Total: -8.63 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 1.61 Total: -41.64 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.27 -6.50 -35.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.249 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds