Wall clock time and date at job start Tue Mar 31 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27972 * 125.05623 * 2 1 4 4 N 1.37934 * 115.12103 * 179.76651 * 3 2 1 5 5 H 0.96998 * 122.81456 * 180.29041 * 4 3 2 6 6 C 1.33674 * 114.37672 * 0.49114 * 4 3 2 7 7 N 1.33184 * 125.23796 * 179.79681 * 6 4 3 8 8 C 1.33574 * 119.99597 * 179.72271 * 7 6 4 9 9 O 1.21888 * 120.00258 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99671 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62995 * 359.71924 * 10 8 7 12 12 C 1.52758 * 109.00682 * 233.58186 * 11 10 8 13 13 C 1.53039 * 109.38439 * 305.58958 * 12 11 10 14 14 C 1.50695 * 109.44663 * 181.25425 * 13 12 11 15 15 H 1.08006 * 120.00026 * 239.94086 * 14 13 12 16 16 C 1.37879 * 120.00293 * 59.93967 * 14 13 12 17 17 N 1.31514 * 119.99937 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00047 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46974 * 60.00211 * 18 16 14 20 20 H 1.48506 * 109.46833 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47433 * 300.00224 * 18 16 14 22 22 C 1.53041 * 109.53647 * 61.24252 * 13 12 11 23 23 C 1.46923 * 120.62964 * 179.97438 * 10 8 7 24 24 S 1.70864 * 109.51953 * 359.53784 * 6 4 3 25 25 H 1.09001 * 109.47098 * 269.96197 * 1 2 3 26 26 H 1.09001 * 109.46852 * 29.96225 * 1 2 3 27 27 H 1.08996 * 109.46776 * 149.96326 * 1 2 3 28 28 H 1.09003 * 109.58790 * 353.42296 * 11 10 8 29 29 H 1.09007 * 109.58432 * 113.84106 * 11 10 8 30 30 H 1.08998 * 109.56153 * 185.55612 * 12 11 10 31 31 H 1.09003 * 109.38437 * 65.51806 * 12 11 10 32 32 H 1.09000 * 109.45771 * 301.22193 * 13 12 11 33 33 H 0.96992 * 119.99887 * 179.97438 * 17 16 14 34 34 H 1.08996 * 109.49638 * 178.68503 * 22 13 12 35 35 H 1.08997 * 109.52468 * 58.59952 * 22 13 12 36 36 H 1.08998 * 109.59009 * 246.15627 * 23 10 8 37 37 H 1.09003 * 109.58381 * 6.44334 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2421 1.0476 0.0000 4 7 3.6007 0.8096 0.0051 5 1 4.2591 1.5219 0.0098 6 6 3.9341 -0.4849 -0.0012 7 7 5.1792 -0.9577 -0.0020 8 6 5.3928 -2.2763 -0.0029 9 8 4.4483 -3.0467 -0.0027 10 7 6.6528 -2.7548 -0.0032 11 6 7.8015 -1.8387 -0.0086 12 6 8.7232 -2.2033 -1.1709 13 6 9.0997 -3.6835 -1.0756 14 6 10.0336 -4.0373 -2.2041 15 1 9.7536 -4.7972 -2.9187 16 6 11.2456 -3.3910 -2.3244 17 7 11.5864 -2.4654 -1.4546 18 14 12.4035 -3.8302 -3.7230 19 1 11.7302 -3.5748 -5.0218 20 1 13.6301 -2.9982 -3.6298 21 1 12.7704 -5.2660 -3.6296 22 6 7.8355 -4.5405 -1.1723 23 6 6.9038 -4.2025 -0.0037 24 16 2.5170 -1.4394 -0.0009 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8903 -0.5133 27 1 -0.3633 -0.8896 -0.5144 28 1 7.4509 -0.8137 -0.1295 29 1 8.3475 -1.9318 0.9303 30 1 9.6262 -1.5945 -1.1254 31 1 8.2072 -2.0191 -2.1133 32 1 9.5940 -3.8718 -0.1225 33 1 12.4391 -2.0110 -1.5391 34 1 8.1066 -5.5952 -1.1278 35 1 7.3272 -4.3349 -2.1143 36 1 7.3752 -4.4920 0.9354 37 1 5.9607 -4.7367 -0.1191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543768312.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:34 Heat of formation + Delta-G solvation = 48.605647 kcal Electronic energy + Delta-G solvation = -21415.457172 eV Core-core repulsion = 18127.739475 eV Total energy + Delta-G solvation = -3287.717697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60557 -39.76727 -37.15524 -34.83569 -33.45548 -32.63494 -31.07301 -29.97477 -28.84653 -26.39392 -25.14823 -23.01078 -22.20988 -20.90464 -20.71999 -19.28714 -18.21692 -17.25158 -16.94681 -16.27137 -16.15032 -15.86030 -14.84847 -14.52493 -14.30144 -13.80594 -13.61800 -13.10358 -13.03810 -12.85956 -12.70139 -12.56628 -12.33014 -11.58125 -11.34722 -11.29315 -10.95633 -10.89597 -10.63752 -10.32818 -10.21135 -9.96927 -9.88389 -9.56377 -9.22518 -9.12269 -8.82491 -8.52764 -8.31603 -7.74128 -5.98611 -4.04865 0.68278 0.77245 1.29887 1.30722 2.03037 3.32212 3.36703 3.39678 3.42341 3.82421 4.13347 4.44032 4.65537 5.00471 5.01116 5.16606 5.30952 5.46810 5.79104 5.93535 5.99338 6.17583 6.27353 6.45839 6.51683 6.60489 6.70362 6.76379 6.95590 7.11507 7.21850 7.33147 7.39117 7.72135 7.98096 8.03455 8.10492 8.45104 8.84792 8.98245 9.59709 11.06800 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.034823 B = 0.003296 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.865829 B = 8494.174917 C = 8834.460495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.002 3.998 3 N -0.229 5.229 4 N -0.491 5.491 5 H 0.450 0.550 6 C 0.359 3.641 7 N -0.605 5.605 8 C 0.669 3.331 9 O -0.604 6.604 10 N -0.575 5.575 11 C 0.113 3.887 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.123 4.123 23 C 0.122 3.878 24 S 0.204 5.796 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 6.302 4.791 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.297 4.297 3 N -0.045 5.045 4 N -0.220 5.220 5 H 0.298 0.702 6 C -0.023 4.023 7 N -0.363 5.363 8 C 0.368 3.632 9 O -0.488 6.488 10 N -0.306 5.306 11 C -0.009 4.009 12 C -0.162 4.162 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.161 4.161 23 C -0.001 4.001 24 S 0.435 5.565 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.150 6.006 4.837 21.575 hybrid contribution 1.264 0.504 -0.811 1.584 sum -18.886 6.511 4.026 20.379 Atomic orbital electron populations 1.20405 0.83018 1.04898 1.04621 1.29072 1.03472 0.96504 1.00640 1.74409 0.87472 1.24401 1.18245 1.45862 1.04076 1.05048 1.67008 0.70236 1.24636 0.96407 0.90164 0.91056 1.68228 1.13510 1.16781 1.37758 1.16622 0.84304 0.83930 0.78372 1.90697 1.40639 1.58976 1.58534 1.47148 1.03779 1.07819 1.71833 1.21880 0.85955 0.92692 1.00352 1.21941 0.98546 1.01571 0.94138 1.18643 0.90458 0.90456 0.97483 1.21173 1.01474 1.20660 1.11708 0.92795 1.24962 0.97856 0.95079 0.96084 1.69833 1.22333 1.25113 1.35769 0.86680 0.80239 0.78398 0.82797 1.20378 1.21329 1.20315 1.22026 0.97527 1.00433 0.96124 1.21728 1.00159 0.78634 0.99575 1.86927 0.92038 1.01762 1.75736 0.88766 0.89196 0.88974 0.90104 0.92574 0.87830 0.94509 0.95456 0.92956 0.92011 0.92997 0.92071 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.49 36.01 0.38 0.06 16 2 C 0.00 0.02 7.62 -13.89 -0.11 -0.09 16 3 N -0.23 -2.38 12.07 33.21 0.40 -1.98 16 4 N -0.49 -5.68 6.83 29.39 0.20 -5.47 16 5 H 0.45 4.30 8.96 -184.20 -1.65 2.65 16 6 C 0.36 5.24 8.16 -89.31 -0.73 4.51 16 7 N -0.60 -10.74 9.05 -18.27 -0.17 -10.90 16 8 C 0.67 13.36 8.21 -87.98 -0.72 12.64 16 9 O -0.60 -12.32 13.04 5.02 0.07 -12.26 16 10 N -0.57 -11.65 2.98 -179.03 -0.53 -12.19 16 11 C 0.11 2.31 6.40 -3.93 -0.03 2.29 16 12 C -0.12 -2.92 5.14 -26.84 -0.14 -3.06 16 13 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 14 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.08 11.30 55.43 0.63 -24.45 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.12 -2.63 5.30 -26.59 -0.14 -2.77 16 23 C 0.12 2.37 6.44 -3.69 -0.02 2.34 16 24 S 0.20 2.55 19.94 -107.50 -2.14 0.40 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 1.58 6.85 -51.93 -0.36 1.22 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.51 7.00 -51.93 -0.36 1.14 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -31.97 317.92 -9.89 -41.86 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.03 Total: -0.27 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.09 Total: 4.21 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.53 Total: -55.00 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.14 Total: 0.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.97 -9.89 -41.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543768312.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.467 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds