Wall clock time and date at job start Tue Mar 31 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47508 * 2 1 4 4 H 1.09003 * 109.46844 * 304.99958 * 3 2 1 5 5 C 1.50695 * 109.47006 * 185.00087 * 3 2 1 6 6 H 1.08005 * 120.00141 * 239.99882 * 5 3 2 7 7 C 1.37881 * 120.00492 * 59.99802 * 5 3 2 8 8 N 1.31515 * 119.99303 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00435 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47022 * 90.00187 * 9 7 5 11 11 H 1.48490 * 109.47298 * 210.00057 * 9 7 5 12 12 H 1.48500 * 109.47353 * 330.00324 * 9 7 5 13 13 N 1.46494 * 109.47084 * 64.99919 * 3 2 1 14 14 C 1.34783 * 120.00165 * 275.00198 * 13 3 2 15 15 O 1.21613 * 119.99563 * 0.02562 * 14 13 3 16 16 C 1.47370 * 120.00087 * 180.02562 * 14 13 3 17 17 C 1.39766 * 120.19429 * 5.91407 * 16 14 13 18 18 C 1.37691 * 119.93994 * 179.72650 * 17 16 14 19 19 C 1.38767 * 120.33814 * 0.22691 * 18 17 16 20 20 Cl 1.73598 * 119.80204 * 180.02562 * 19 18 17 21 21 C 1.38105 * 120.39274 * 0.02618 * 19 18 17 22 22 C 1.38893 * 120.05210 * 0.02562 * 21 19 18 23 23 N 1.38883 * 120.16847 * 180.02562 * 22 21 19 24 24 C 1.46500 * 119.99785 * 354.54407 * 23 22 21 25 25 H 1.08997 * 109.46825 * 300.00272 * 1 2 3 26 26 H 1.08997 * 109.47033 * 60.00014 * 1 2 3 27 27 H 1.08991 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47257 * 239.99580 * 2 1 3 29 29 H 1.09007 * 109.47199 * 120.00485 * 2 1 3 30 30 H 0.97009 * 119.99770 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00089 * 95.00252 * 13 3 2 32 32 H 1.07999 * 120.03168 * 359.97438 * 17 16 14 33 33 H 1.07995 * 119.83330 * 180.24554 * 18 17 16 34 34 H 1.08001 * 119.97326 * 180.02562 * 21 19 18 35 35 H 0.96995 * 120.00196 * 174.53894 * 23 22 21 36 36 H 1.09002 * 109.46857 * 299.99826 * 24 23 22 37 37 H 1.08997 * 109.47837 * 59.99331 * 24 23 22 38 38 H 1.08997 * 109.46883 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8887 0.6523 7 6 4.1434 0.8782 -1.2280 8 7 3.4062 0.3364 -2.1728 9 14 6.0050 0.8809 -1.3818 10 1 6.5549 -0.3506 -0.7602 11 1 6.3830 0.9219 -2.8172 12 1 6.5572 2.0734 -0.6902 13 7 1.6526 2.0974 1.2517 14 6 0.4353 2.6644 1.3669 15 8 -0.3416 2.6318 0.4318 16 6 0.0457 3.3238 2.6260 17 6 0.9757 3.4727 3.6586 18 6 0.6076 4.0947 4.8306 19 6 -0.6851 4.5714 4.9950 20 17 -1.1340 5.3539 6.4782 21 6 -1.6168 4.4270 3.9858 22 6 -1.2633 3.8013 2.7973 23 7 -2.1981 3.6553 1.7805 24 6 -3.5905 4.0529 2.0031 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0615 -2.9498 31 1 2.2721 2.1231 1.9977 32 1 1.9833 3.1039 3.5358 33 1 1.3288 4.2123 5.6258 34 1 -2.6209 4.8010 4.1209 35 1 -1.9291 3.2901 0.9232 36 1 -4.0061 3.4742 2.8281 37 1 -3.6307 5.1143 2.2474 38 1 -4.1704 3.8661 1.0993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564465862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:47 Heat of formation + Delta-G solvation = -19.672968 kcal Electronic energy + Delta-G solvation = -21706.601246 eV Core-core repulsion = 18381.586309 eV Total energy + Delta-G solvation = -3325.014937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17478 -38.25300 -36.68979 -35.57682 -34.89484 -32.51715 -31.44491 -30.23943 -29.77844 -27.08711 -25.80174 -23.83977 -22.86196 -21.60778 -20.55018 -19.42468 -17.99688 -17.20405 -16.42093 -15.74289 -15.32836 -14.94640 -14.81963 -14.51871 -14.23068 -14.17338 -13.81158 -13.24412 -13.09498 -12.73001 -12.36447 -12.17870 -12.10136 -11.67837 -11.53224 -11.39423 -11.27972 -11.02591 -10.98043 -10.84843 -10.34979 -10.22429 -10.07394 -9.67259 -9.12944 -9.06442 -8.81327 -8.53977 -7.94126 -7.38113 -6.15629 -4.25140 0.91190 1.54470 2.02663 3.21567 3.23015 3.30018 3.31947 3.62493 4.03704 4.11132 4.35654 4.76747 5.09746 5.12214 5.16069 5.29700 5.34469 5.38746 5.56281 5.61548 5.68278 6.05332 6.22190 6.33174 6.35574 6.42142 6.60299 6.63059 7.01020 7.14148 7.28633 7.32350 7.35449 7.58219 7.69069 7.85496 7.99754 8.16409 8.59388 8.73279 9.06112 9.42214 10.89637 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.003971 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.545565 B = 7048.786637 C = 8066.098687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.697 5.697 14 C 0.558 3.442 15 O -0.558 6.558 16 C -0.211 4.211 17 C -0.024 4.024 18 C -0.187 4.187 19 C 0.036 3.964 20 Cl -0.078 7.078 21 C -0.210 4.210 22 C 0.282 3.718 23 N -0.725 5.725 24 C 0.083 3.917 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.425 0.575 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 6.767 12.772 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.343 5.343 14 C 0.346 3.654 15 O -0.440 6.440 16 C -0.219 4.219 17 C -0.043 4.043 18 C -0.208 4.208 19 C 0.008 3.992 20 Cl -0.049 7.049 21 C -0.234 4.234 22 C 0.171 3.829 23 N -0.364 5.364 24 C -0.062 4.062 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.276 0.724 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.057 6.709 11.950 16.999 hybrid contribution 1.293 -0.058 0.193 1.309 sum -8.764 6.651 12.143 16.386 Atomic orbital electron populations 1.21838 0.98398 0.98079 1.01139 1.21939 0.92603 0.99728 1.02374 1.18834 0.94325 0.89211 0.80785 0.93112 1.21223 0.90638 1.39156 1.06382 0.92049 1.24876 0.98638 0.94740 0.95338 1.69893 1.35153 1.37513 1.09346 0.86453 0.84817 0.78481 0.77400 1.20524 1.21079 1.19823 1.46395 1.14227 1.55038 1.18652 1.17878 0.82850 0.78601 0.86121 1.90338 1.51084 1.62047 1.40576 1.19772 0.94071 1.10485 0.97586 1.21083 0.98605 0.93651 0.90998 1.20627 0.94980 1.05654 0.99550 1.20739 0.94533 0.96687 0.87236 1.98357 1.92979 1.79335 1.34190 1.20384 1.00621 1.09056 0.93337 1.17589 0.88064 0.89435 0.87846 1.45587 1.06860 1.67547 1.16449 1.21634 0.82846 0.99595 1.02116 0.94290 0.93150 0.95866 0.88209 0.94985 0.92546 0.77720 0.84630 0.85030 0.84867 0.72389 0.92957 0.92985 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.57 2.24 -69.09 -0.15 6.42 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.70 -14.02 4.97 -56.03 -0.28 -14.30 16 14 C 0.56 10.80 6.31 -12.54 -0.08 10.73 16 15 O -0.56 -11.95 10.78 5.27 0.06 -11.89 16 16 C -0.21 -3.39 5.89 -104.80 -0.62 -4.01 16 17 C -0.02 -0.32 9.52 -39.21 -0.37 -0.69 16 18 C -0.19 -2.27 9.80 -39.59 -0.39 -2.66 16 19 C 0.04 0.44 6.32 -39.43 -0.25 0.19 16 20 Cl -0.08 -0.83 28.94 -51.86 -1.50 -2.33 16 21 C -0.21 -2.69 9.07 -39.39 -0.36 -3.05 16 22 C 0.28 4.21 6.65 -83.62 -0.56 3.65 16 23 N -0.73 -10.44 5.75 -65.21 -0.37 -10.82 16 24 C 0.08 0.84 9.97 59.85 0.60 1.44 16 25 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 29 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.84 6.60 -40.82 -0.27 6.57 16 32 H 0.14 1.60 6.45 -52.49 -0.34 1.27 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.46 6.72 -52.49 -0.35 1.10 16 35 H 0.43 7.08 5.34 -40.95 -0.22 6.86 16 36 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.05 0.47 7.73 -51.93 -0.40 0.07 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -28.16 322.83 -8.67 -36.83 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -4.64 Total: 12.17 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.40 Total: -6.20 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.03 Total: -48.66 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.06 Total: -11.89 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.16 -8.67 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564465862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.157 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds