Wall clock time and date at job start Tue Mar 31 2020 08:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47311 * 2 1 4 4 C 1.50702 * 109.47041 * 240.00306 * 2 1 3 5 5 H 1.07998 * 120.00084 * 239.99930 * 4 2 1 6 6 C 1.37878 * 119.99969 * 59.99711 * 4 2 1 7 7 N 1.31511 * 120.00269 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46698 * 59.99968 * 8 6 4 10 10 H 1.48498 * 109.47117 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47022 * 300.00436 * 8 6 4 12 12 N 1.46900 * 109.47122 * 120.00213 * 2 1 3 13 13 C 1.46898 * 110.99657 * 274.99725 * 12 2 1 14 14 C 1.50709 * 109.46757 * 180.02562 * 13 12 2 15 15 C 1.38289 * 119.87279 * 259.98147 * 14 13 12 16 16 C 1.37955 * 120.21227 * 180.02562 * 15 14 13 17 17 C 1.39665 * 119.95656 * 0.02562 * 16 15 14 18 18 C 1.43200 * 120.12242 * 180.02562 * 17 16 15 19 19 N 8.92075 * 108.57007 * 111.94266 * 2 1 3 20 20 C 1.39547 * 119.75344 * 359.75926 * 17 16 15 21 21 C 1.38487 * 119.78348 * 0.47410 * 20 17 16 22 22 O 1.35910 * 119.97565 * 179.79855 * 21 20 17 23 23 C 1.42900 * 117.00225 * 359.72012 * 22 21 20 24 24 F 1.39905 * 109.47006 * 60.00329 * 23 22 21 25 25 F 1.39900 * 109.47309 * 300.00630 * 23 22 21 26 26 H 1.09005 * 109.47305 * 299.99649 * 1 2 3 27 27 H 1.09003 * 109.47389 * 59.99408 * 1 2 3 28 28 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00165 * 180.02562 * 7 6 4 30 30 H 1.00902 * 110.99529 * 151.05036 * 12 2 1 31 31 H 1.08999 * 109.47462 * 60.00321 * 13 12 2 32 32 H 1.08998 * 109.47569 * 300.00179 * 13 12 2 33 33 H 1.07998 * 119.89331 * 0.02562 * 15 14 13 34 34 H 1.07992 * 120.02276 * 180.02562 * 16 15 14 35 35 H 1.07997 * 120.10967 * 180.27251 * 20 17 16 36 36 H 1.09004 * 109.47113 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8256 -2.5201 -4.0078 10 1 1.8267 -0.4197 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3468 14 6 2.5885 -0.5216 3.5557 15 6 1.6956 -0.9730 4.5103 16 6 2.1512 -1.6545 5.6199 17 6 3.5185 -1.8896 5.7811 18 6 3.9953 -2.5971 6.9312 19 7 4.3709 -3.1599 7.8437 20 6 4.4177 -1.4373 4.8146 21 6 3.9493 -0.7500 3.7073 22 8 4.8220 -0.3042 2.7656 23 6 6.2078 -0.5745 2.9856 24 9 6.4074 -1.9573 3.0583 25 9 6.6140 0.0190 4.1856 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7087 1.1615 -3.4844 30 1 2.9173 -1.1205 1.0286 31 1 1.0871 0.6163 2.5525 32 1 2.7588 1.0462 2.1182 33 1 0.6382 -0.7915 4.3868 34 1 1.4512 -2.0061 6.3632 35 1 5.4757 -1.6197 4.9313 36 1 6.7930 -0.1654 2.1619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:53 Heat of formation + Delta-G solvation = -90.592637 kcal Electronic energy + Delta-G solvation = -23410.825982 eV Core-core repulsion = 19530.939058 eV Total energy + Delta-G solvation = -3879.886925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.53061 -47.50904 -40.40197 -37.96426 -36.65032 -35.77904 -33.13096 -31.41264 -30.59547 -28.42690 -26.38220 -25.63385 -24.87697 -22.77460 -21.96768 -20.01043 -19.79701 -18.47777 -18.07688 -17.53889 -16.79647 -16.10902 -15.39629 -15.17504 -14.97716 -14.74035 -14.25223 -14.01097 -13.92988 -13.89111 -13.78856 -13.50122 -13.46363 -13.27555 -12.85022 -12.57016 -12.55945 -11.89792 -11.76325 -11.70603 -11.38168 -11.07423 -10.81702 -10.81089 -10.32069 -10.16698 -10.02785 -9.07772 -8.87328 -8.58001 -8.47520 -7.33759 -6.05651 -4.12064 0.58280 1.12412 2.37461 2.50589 2.77380 3.28083 3.28902 3.33860 3.36615 3.64212 3.67595 4.17123 4.37735 4.46650 4.55567 4.74839 4.82204 5.01997 5.25668 5.34074 5.49780 5.52648 5.73177 5.90553 6.05328 6.17170 6.30747 6.49115 6.81693 6.84267 7.09582 7.18197 7.29095 7.44561 7.74530 7.85582 8.23540 8.32502 8.60635 8.97532 9.53908 11.00599 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.004125 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.071846 B = 6785.836880 C = 7677.513566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.095 3.905 14 C -0.046 4.046 15 C -0.073 4.073 16 C -0.091 4.091 17 C -0.007 4.007 18 C 0.262 3.738 19 N -0.422 5.422 20 C -0.145 4.145 21 C 0.109 3.891 22 O -0.305 6.305 23 C 0.409 3.591 24 F -0.198 7.198 25 F -0.201 7.201 26 H 0.004 0.996 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 -0.290 12.685 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.311 5.311 13 C -0.034 4.034 14 C -0.048 4.048 15 C -0.092 4.092 16 C -0.112 4.112 17 C -0.011 4.011 18 C -0.053 4.053 19 N -0.097 5.097 20 C -0.166 4.166 21 C 0.065 3.935 22 O -0.222 6.222 23 C 0.319 3.681 24 F -0.179 7.179 25 F -0.183 7.183 26 H 0.023 0.977 27 H 0.099 0.901 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.370 -1.194 13.962 15.393 hybrid contribution 1.203 0.108 -1.242 1.733 sum 7.573 -1.086 12.719 14.843 Atomic orbital electron populations 1.21727 0.97809 0.99413 0.99395 1.19122 0.92614 0.92412 0.85344 0.97961 1.21205 1.31560 1.12535 0.90390 0.92275 1.24901 0.95032 0.94969 0.98994 1.69877 1.36558 1.22833 1.23609 0.86594 0.79062 0.79831 0.82099 1.20180 1.21323 1.20347 1.60876 1.32361 1.32335 1.05563 1.20884 1.00182 0.93585 0.88740 1.19792 0.89001 0.98402 0.97575 1.20911 1.00181 0.96102 0.91992 1.21140 0.93042 0.98494 0.98526 1.15600 0.93573 1.01390 0.90549 1.25637 0.93480 0.93304 0.92924 1.81232 1.07845 1.09668 1.10950 1.21415 1.00533 1.00726 0.93961 1.18479 0.89696 0.96788 0.88529 1.86762 1.15379 1.74702 1.45402 1.23474 0.82817 0.75548 0.86267 1.93107 1.94681 1.33412 1.96737 1.93091 1.90401 1.83669 1.51169 0.97661 0.90087 0.94900 0.92847 0.84879 0.90296 0.94309 0.83598 0.84622 0.84324 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.19 37.16 0.34 -2.61 16 2 C 0.21 5.09 2.60 -68.87 -0.18 4.91 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.33 16 4 C -0.52 -13.67 8.59 -34.44 -0.30 -13.97 16 5 H 0.06 1.54 7.62 -52.49 -0.40 1.14 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.68 -13.51 6.29 -109.22 -0.69 -14.20 16 13 C 0.10 1.54 5.26 -4.97 -0.03 1.52 16 14 C -0.05 -0.62 5.41 -104.39 -0.56 -1.18 16 15 C -0.07 -0.81 9.64 -39.67 -0.38 -1.19 16 16 C -0.09 -0.91 9.75 -39.15 -0.38 -1.29 16 17 C -0.01 -0.08 5.73 -106.95 -0.61 -0.70 16 18 C 0.26 3.24 15.33 -22.47 -0.34 2.89 16 19 N -0.42 -5.96 18.54 41.84 0.78 -5.18 16 20 C -0.15 -1.75 7.96 -39.00 -0.31 -2.06 16 21 C 0.11 1.43 6.45 -39.28 -0.25 1.18 16 22 O -0.31 -3.90 9.58 -19.46 -0.19 -4.09 16 23 C 0.41 3.91 5.98 101.05 0.60 4.51 16 24 F -0.20 -2.19 15.56 2.25 0.04 -2.15 16 25 F -0.20 -2.07 15.60 2.25 0.04 -2.03 16 26 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 27 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.33 6.69 8.14 -39.29 -0.32 6.37 16 31 H 0.08 1.23 7.29 -51.93 -0.38 0.85 16 32 H 0.04 0.65 7.75 -51.93 -0.40 0.25 16 33 H 0.15 1.37 8.03 -52.49 -0.42 0.95 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.62 5.09 -52.49 -0.27 1.35 16 36 H 0.18 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -29.69 322.84 -5.76 -35.45 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.70 Total: 2.12 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.50 Total: -6.41 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.72 Total: -43.38 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.19 Total: -4.09 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.69 -5.76 -35.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.142 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds