Wall clock time and date at job start Tue Mar 31 2020 08:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47311 * 2 1 4 4 C 1.50702 * 109.47041 * 240.00306 * 2 1 3 5 5 H 1.07998 * 120.00084 * 239.99930 * 4 2 1 6 6 C 1.37878 * 119.99969 * 59.99711 * 4 2 1 7 7 N 1.31511 * 120.00269 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46698 * 59.99968 * 8 6 4 10 10 H 1.48498 * 109.47117 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47022 * 300.00436 * 8 6 4 12 12 N 1.46900 * 109.47122 * 120.00213 * 2 1 3 13 13 C 1.46898 * 110.99657 * 274.99725 * 12 2 1 14 14 C 1.50709 * 109.46757 * 180.02562 * 13 12 2 15 15 C 1.38289 * 119.87279 * 259.98147 * 14 13 12 16 16 C 1.37955 * 120.21227 * 180.02562 * 15 14 13 17 17 C 1.39665 * 119.95656 * 0.02562 * 16 15 14 18 18 C 1.43200 * 120.12242 * 180.02562 * 17 16 15 19 19 N 8.92075 * 108.57007 * 111.94266 * 2 1 3 20 20 C 1.39547 * 119.75344 * 359.75926 * 17 16 15 21 21 C 1.38487 * 119.78348 * 0.47410 * 20 17 16 22 22 O 1.35910 * 119.97565 * 179.79855 * 21 20 17 23 23 C 1.42900 * 117.00225 * 359.72012 * 22 21 20 24 24 F 1.39905 * 109.47006 * 60.00329 * 23 22 21 25 25 F 1.39900 * 109.47309 * 300.00630 * 23 22 21 26 26 H 1.09005 * 109.47305 * 299.99649 * 1 2 3 27 27 H 1.09003 * 109.47389 * 59.99408 * 1 2 3 28 28 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00165 * 180.02562 * 7 6 4 30 30 H 1.00902 * 110.99529 * 151.05036 * 12 2 1 31 31 H 1.08999 * 109.47462 * 60.00321 * 13 12 2 32 32 H 1.08998 * 109.47569 * 300.00179 * 13 12 2 33 33 H 1.07998 * 119.89331 * 0.02562 * 15 14 13 34 34 H 1.07992 * 120.02276 * 180.02562 * 16 15 14 35 35 H 1.07997 * 120.10967 * 180.27251 * 20 17 16 36 36 H 1.09004 * 109.47113 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.8256 -2.5201 -4.0078 10 1 1.8267 -0.4197 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3468 14 6 2.5885 -0.5216 3.5557 15 6 1.6956 -0.9730 4.5103 16 6 2.1512 -1.6545 5.6199 17 6 3.5185 -1.8896 5.7811 18 6 3.9953 -2.5971 6.9312 19 7 4.3709 -3.1599 7.8437 20 6 4.4177 -1.4373 4.8146 21 6 3.9493 -0.7500 3.7073 22 8 4.8220 -0.3042 2.7656 23 6 6.2078 -0.5745 2.9856 24 9 6.4074 -1.9573 3.0583 25 9 6.6140 0.0190 4.1856 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7087 1.1615 -3.4844 30 1 2.9173 -1.1205 1.0286 31 1 1.0871 0.6163 2.5525 32 1 2.7588 1.0462 2.1182 33 1 0.6382 -0.7915 4.3868 34 1 1.4512 -2.0061 6.3632 35 1 5.4757 -1.6197 4.9313 36 1 6.7930 -0.1654 2.1619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:52 Heat of formation + Delta-G solvation = -108.719793 kcal Electronic energy + Delta-G solvation = -23411.612035 eV Core-core repulsion = 19530.939058 eV Total energy + Delta-G solvation = -3880.672977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.32875 -48.31430 -41.34765 -38.89180 -37.92089 -37.17784 -34.78492 -32.85428 -31.52094 -30.01355 -27.40517 -27.15947 -26.43411 -23.68723 -23.12285 -21.63296 -20.89443 -19.32596 -18.89267 -18.66079 -18.29054 -17.25681 -16.75249 -16.41026 -16.09304 -15.92136 -15.52421 -15.25733 -15.04052 -14.79963 -14.78551 -14.71055 -14.58508 -14.28167 -14.14996 -13.82411 -13.40335 -13.37852 -13.10629 -12.94645 -12.75662 -12.59564 -12.54508 -12.17432 -12.13676 -12.05787 -11.72505 -10.83941 -10.51926 -10.01637 -9.52412 -8.97476 -8.08128 -6.21349 -0.38057 0.23360 1.46289 1.46771 1.47881 1.55126 1.63100 1.79544 2.45738 2.49824 2.70221 2.73618 3.20934 3.53414 3.58593 3.68889 3.73651 3.98347 3.98778 4.09663 4.40502 4.59631 4.63369 4.87455 4.93148 4.95612 5.16605 5.17452 5.29906 5.36271 5.54930 5.55255 5.72132 5.90028 5.94465 6.30261 6.31395 6.51797 6.81631 7.04347 7.48767 8.96984 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.004125 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.071846 B = 6785.836880 C = 7677.513566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.217 3.783 3 H -0.027 1.027 4 C -0.535 4.535 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.676 5.676 13 C 0.101 3.899 14 C -0.064 4.064 15 C -0.066 4.066 16 C -0.076 4.076 17 C -0.007 4.007 18 C 0.281 3.719 19 N -0.452 5.452 20 C -0.149 4.149 21 C 0.100 3.900 22 O -0.325 6.325 23 C 0.405 3.595 24 F -0.207 7.207 25 F -0.206 7.206 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.332 0.668 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.140 0.860 36 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 -0.957 13.341 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 H -0.009 1.009 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.307 5.307 13 C -0.028 4.028 14 C -0.066 4.066 15 C -0.084 4.084 16 C -0.097 4.097 17 C -0.010 4.010 18 C -0.034 4.034 19 N -0.128 5.128 20 C -0.170 4.170 21 C 0.056 3.944 22 O -0.242 6.242 23 C 0.316 3.684 24 F -0.189 7.189 25 F -0.188 7.188 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.184 0.816 34 H 0.185 0.815 35 H 0.157 0.843 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.387 -1.867 14.640 16.082 hybrid contribution 1.220 0.334 -1.375 1.868 sum 7.607 -1.533 13.265 15.368 Atomic orbital electron populations 1.21548 0.97492 0.98937 0.99285 1.18916 0.92831 0.90868 0.86546 1.00927 1.21552 1.31574 1.12594 0.91666 0.92482 1.25655 0.95232 0.95638 1.01804 1.70004 1.37474 1.23999 1.24129 0.85629 0.78808 0.78649 0.78624 1.19883 1.21134 1.19535 1.60774 1.32214 1.32656 1.05014 1.20811 1.00454 0.93036 0.88471 1.19664 0.89686 0.99805 0.97401 1.21147 1.00812 0.95105 0.91376 1.21419 0.92771 0.96993 0.98476 1.15681 0.94230 1.01182 0.89935 1.25664 0.92614 0.92556 0.92526 1.81258 1.08795 1.10767 1.12001 1.21420 1.00794 1.00857 0.93942 1.18579 0.89821 0.97049 0.88906 1.86747 1.16761 1.74926 1.45770 1.24168 0.81929 0.75132 0.87187 1.93083 1.94611 1.34413 1.96813 1.93076 1.90272 1.83664 1.51792 0.95253 0.92692 0.95347 0.92908 0.85128 0.89659 0.95436 0.81578 0.81485 0.84274 0.75817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 9.19 71.98 0.66 -4.71 16 2 C 0.22 10.47 2.60 44.17 0.11 10.59 16 3 H -0.03 -1.43 7.80 -2.39 -0.02 -1.45 16 4 C -0.54 -28.37 8.59 25.60 0.22 -28.15 16 5 H 0.06 2.97 7.62 -2.91 -0.02 2.95 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -51.26 11.32 21.45 0.24 -51.02 16 8 Si 0.96 42.21 29.54 68.60 2.03 44.23 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.68 -26.64 6.29 -499.46 -3.14 -29.78 16 13 C 0.10 3.21 5.26 85.56 0.45 3.66 16 14 C -0.06 -1.63 5.41 -19.71 -0.11 -1.74 16 15 C -0.07 -1.28 9.64 22.21 0.21 -1.07 16 16 C -0.08 -1.28 9.75 22.55 0.22 -1.06 16 17 C -0.01 -0.13 5.73 -21.37 -0.12 -0.26 16 18 C 0.28 6.45 15.33 88.33 1.35 7.80 16 19 N -0.45 -12.18 18.54 19.00 0.35 -11.83 16 20 C -0.15 -3.41 7.96 22.65 0.18 -3.23 16 21 C 0.10 2.54 6.45 22.47 0.14 2.68 16 22 O -0.32 -8.12 9.58 -92.54 -0.89 -9.01 16 23 C 0.40 7.32 5.98 113.37 0.68 8.00 16 24 F -0.21 -4.42 15.56 44.97 0.70 -3.72 16 25 F -0.21 -4.05 15.60 44.97 0.70 -3.35 16 26 H 0.03 1.18 7.45 -2.38 -0.02 1.17 16 27 H 0.05 2.88 6.07 -2.39 -0.01 2.86 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.33 13.27 8.14 -89.69 -0.73 12.54 16 31 H 0.09 2.55 7.29 -2.39 -0.02 2.54 16 32 H 0.03 0.93 7.75 -2.39 -0.02 0.92 16 33 H 0.17 2.54 8.03 -2.91 -0.02 2.52 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.14 3.13 5.09 -2.91 -0.01 3.11 16 36 H 0.23 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -63.79 322.84 4.86 -58.93 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.41 Total: 11.73 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 4.46 Total: -6.18 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -2.55 Total: -92.63 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.89 Total: -9.01 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.40 Total: -7.07 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -63.79 4.86 -58.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.793 kcal (2) G-P(sol) polarization free energy of solvation -63.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds