Wall clock time and date at job start Tue Mar 31 2020 08:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46798 * 179.97438 * 17 16 14 19 19 C 1.38266 * 119.99060 * 269.72084 * 18 17 16 20 20 C 1.38219 * 120.02293 * 179.76954 * 19 18 17 21 21 C 1.38243 * 120.01223 * 0.51086 * 20 19 18 22 22 C 1.38329 * 119.98643 * 359.74796 * 21 20 19 23 23 Cl 1.73599 * 120.01075 * 180.02562 * 22 21 20 24 24 C 1.38189 * 119.99401 * 90.00021 * 18 17 16 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 30 30 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 31 31 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 32 32 H 0.97005 * 119.99290 * 359.97438 * 16 14 13 33 33 H 1.09001 * 109.47138 * 299.99921 * 17 16 14 34 34 H 1.09004 * 109.46798 * 60.00147 * 17 16 14 35 35 H 1.07994 * 119.99053 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.99616 * 180.25323 * 20 19 18 37 37 H 1.08004 * 120.00202 * 179.76405 * 21 20 19 38 38 H 1.08002 * 120.00663 * 359.95759 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 3.2855 0.3367 -7.0845 19 6 2.1923 0.4738 -7.9199 20 6 2.2490 1.3383 -8.9969 21 6 3.4025 2.0585 -9.2454 22 6 4.4984 1.9177 -8.4130 23 17 5.9470 2.8223 -8.7242 24 6 4.4391 1.0561 -7.3320 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 2.9172 -1.1204 -1.0288 30 1 1.0871 0.6165 -2.5525 31 1 2.7588 1.0464 -2.1181 32 1 2.5050 1.0624 -4.8007 33 1 4.2162 -0.9964 -5.7017 34 1 2.5443 -1.4255 -6.1366 35 1 1.2924 -0.0917 -7.7286 36 1 1.3934 1.4481 -9.6468 37 1 3.4480 2.7311 -10.0892 38 1 5.2942 0.9460 -6.6815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:49 Heat of formation + Delta-G solvation = -21.787253 kcal Electronic energy + Delta-G solvation = -20249.978456 eV Core-core repulsion = 16924.871837 eV Total energy + Delta-G solvation = -3325.106619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09381 -39.11610 -36.90381 -35.70369 -34.82028 -32.52230 -31.73287 -31.15532 -29.19262 -26.89843 -25.36350 -24.35489 -23.12650 -21.81521 -20.38871 -19.73567 -17.76476 -17.00518 -16.18308 -16.13297 -16.00576 -15.51976 -15.26293 -14.67811 -14.24750 -13.99374 -13.84742 -13.51872 -13.37612 -13.09939 -12.69350 -12.46100 -11.94611 -11.88134 -11.83116 -11.66432 -11.26317 -11.21720 -10.93148 -10.72792 -10.36773 -10.15137 -10.06536 -9.70530 -9.30013 -9.11700 -9.04391 -8.83453 -8.47540 -7.29996 -6.03458 -4.09293 0.65517 0.77183 1.72149 2.94547 2.99360 3.31524 3.37536 3.41431 3.52201 4.18749 4.36303 4.41535 4.60269 4.78741 4.86542 5.02536 5.12773 5.27150 5.34845 5.40899 5.44280 5.60238 5.75143 5.86049 5.87227 5.90016 6.06547 6.30971 6.42726 6.82929 7.10295 7.18129 7.41966 7.58976 7.79005 7.87403 8.25618 8.36142 8.46285 8.65339 9.00927 9.56676 11.03105 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.002378 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.412114 B =11771.406717 C =12083.521013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.673 5.673 13 C 0.044 3.956 14 C 0.514 3.486 15 O -0.523 6.523 16 N -0.738 5.738 17 C 0.162 3.838 18 C -0.091 4.091 19 C -0.096 4.096 20 C -0.108 4.108 21 C -0.106 4.106 22 C -0.037 4.037 23 Cl -0.070 7.070 24 C -0.092 4.092 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.003 0.997 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 5.098 -25.157 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.306 5.306 13 C -0.089 4.089 14 C 0.301 3.699 15 O -0.397 6.397 16 N -0.393 5.393 17 C 0.039 3.961 18 C -0.092 4.092 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.064 4.064 23 Cl -0.041 7.041 24 C -0.112 4.112 25 H 0.052 0.948 26 H 0.100 0.900 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.234 0.766 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.121 4.158 -25.108 25.782 hybrid contribution 1.044 0.768 0.887 1.571 sum 5.166 4.926 -24.222 25.252 Atomic orbital electron populations 1.21739 0.97768 0.99560 0.99330 1.19158 0.92721 0.92291 0.85343 0.98023 1.21261 1.31477 1.12575 0.90300 0.92025 1.24916 0.95040 0.94987 0.99067 1.69895 1.36734 1.22891 1.23502 0.86490 0.79295 0.79305 0.82275 1.20568 1.19879 1.21293 1.60513 1.33439 1.31708 1.04932 1.21809 1.01260 0.94969 0.90853 1.21128 0.76936 0.87843 0.84015 1.90686 1.48622 1.15945 1.84485 1.46116 1.69527 1.14201 1.09410 1.20116 1.01059 0.92877 0.82097 1.19909 0.93659 0.98289 0.97293 1.21280 0.98239 0.97804 0.94137 1.21157 0.97633 0.96085 0.97782 1.21132 0.92004 1.00093 0.99294 1.20935 0.89208 0.98006 0.98204 1.98386 1.36718 1.73578 1.95389 1.21046 0.98769 0.95092 0.96244 0.94775 0.89958 0.97782 0.92914 0.84063 0.88879 0.93321 0.76610 0.90553 0.90358 0.84923 0.84776 0.84864 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.39 2.60 -68.87 -0.18 5.21 16 3 H 0.00 0.06 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.39 8.59 -34.44 -0.30 -14.69 16 5 H 0.06 1.71 7.62 -52.49 -0.40 1.31 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.67 -15.00 5.93 -109.22 -0.65 -15.65 16 13 C 0.04 0.77 5.97 -4.97 -0.03 0.74 16 14 C 0.51 8.29 7.87 -10.99 -0.09 8.20 16 15 O -0.52 -10.49 16.20 5.55 0.09 -10.40 16 16 N -0.74 -8.50 5.55 -61.47 -0.34 -8.84 16 17 C 0.16 1.64 5.80 -5.19 -0.03 1.61 16 18 C -0.09 -0.75 5.25 -104.63 -0.55 -1.30 16 19 C -0.10 -0.69 9.70 -39.58 -0.38 -1.07 16 20 C -0.11 -0.68 10.05 -39.59 -0.40 -1.08 16 21 C -0.11 -0.73 9.83 -39.55 -0.39 -1.12 16 22 C -0.04 -0.30 6.32 -39.50 -0.25 -0.55 16 23 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.07 16 24 C -0.09 -0.77 9.49 -39.55 -0.38 -1.15 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 27 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.34 7.80 7.92 -39.30 -0.31 7.49 16 30 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 31 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.40 3.72 8.46 -40.82 -0.35 3.38 16 33 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -31.44 340.43 -9.44 -40.87 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.06 Total: 5.64 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.72 Total: -6.37 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.36 Total: -49.24 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.44 -9.44 -40.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.087 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds