Wall clock time and date at job start Tue Mar 31 2020 08:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46798 * 179.97438 * 17 16 14 19 19 C 1.38266 * 119.99060 * 269.72084 * 18 17 16 20 20 C 1.38219 * 120.02293 * 179.76954 * 19 18 17 21 21 C 1.38243 * 120.01223 * 0.51086 * 20 19 18 22 22 C 1.38329 * 119.98643 * 359.74796 * 21 20 19 23 23 Cl 1.73599 * 120.01075 * 180.02562 * 22 21 20 24 24 C 1.38189 * 119.99401 * 90.00021 * 18 17 16 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 30 30 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 31 31 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 32 32 H 0.97005 * 119.99290 * 359.97438 * 16 14 13 33 33 H 1.09001 * 109.47138 * 299.99921 * 17 16 14 34 34 H 1.09004 * 109.46798 * 60.00147 * 17 16 14 35 35 H 1.07994 * 119.99053 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.99616 * 180.25323 * 20 19 18 37 37 H 1.08004 * 120.00202 * 179.76405 * 21 20 19 38 38 H 1.08002 * 120.00663 * 359.95759 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 3.2855 0.3367 -7.0845 19 6 2.1923 0.4738 -7.9199 20 6 2.2490 1.3383 -8.9969 21 6 3.4025 2.0585 -9.2454 22 6 4.4984 1.9177 -8.4130 23 17 5.9470 2.8223 -8.7242 24 6 4.4391 1.0561 -7.3320 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 2.9172 -1.1204 -1.0288 30 1 1.0871 0.6165 -2.5525 31 1 2.7588 1.0464 -2.1181 32 1 2.5050 1.0624 -4.8007 33 1 4.2162 -0.9964 -5.7017 34 1 2.5443 -1.4255 -6.1366 35 1 1.2924 -0.0917 -7.7286 36 1 1.3934 1.4481 -9.6468 37 1 3.4480 2.7311 -10.0892 38 1 5.2942 0.9460 -6.6815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602863667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:48 Heat of formation + Delta-G solvation = -42.502991 kcal Electronic energy + Delta-G solvation = -20250.876758 eV Core-core repulsion = 16924.871837 eV Total energy + Delta-G solvation = -3326.004921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97582 -40.12603 -37.60717 -37.40208 -35.89377 -34.46550 -32.59524 -31.73487 -30.93050 -28.10597 -27.27540 -25.79047 -23.68592 -22.50816 -21.86509 -21.42991 -19.03421 -18.13892 -17.63850 -17.06142 -16.96188 -16.72635 -16.35554 -16.25223 -15.41456 -15.25805 -14.85378 -14.61525 -14.47210 -14.30353 -13.92075 -13.87827 -13.36835 -13.07504 -12.82760 -12.66984 -12.54980 -12.45423 -12.39790 -12.29409 -12.19442 -12.00774 -11.82323 -11.01536 -10.84200 -10.56739 -10.14030 -9.97846 -9.72389 -9.07803 -8.14267 -6.27438 0.06384 0.20389 1.12460 1.42421 1.43781 1.53860 1.65397 2.12279 2.42590 2.71614 3.14476 3.50754 3.70213 3.82501 3.93735 4.05808 4.22461 4.24877 4.44158 4.47138 4.49579 4.67051 4.75654 4.84899 4.90479 5.08597 5.19399 5.19839 5.32712 5.38179 5.45684 5.46212 5.65774 5.77595 5.84799 6.22391 6.40774 6.49878 6.75711 6.94375 7.27254 7.42586 8.91363 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.002378 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.412114 B =11771.406717 C =12083.521013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.217 3.783 3 H -0.018 1.018 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.681 5.681 13 C 0.043 3.957 14 C 0.520 3.480 15 O -0.567 6.567 16 N -0.715 5.715 17 C 0.165 3.835 18 C -0.096 4.096 19 C -0.096 4.096 20 C -0.104 4.104 21 C -0.105 4.105 22 C -0.049 4.049 23 Cl -0.075 7.075 24 C -0.101 4.101 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.334 0.666 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 5.599 -26.526 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H 0.000 1.000 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.205 1.205 12 N -0.313 5.313 13 C -0.090 4.090 14 C 0.307 3.693 15 O -0.445 6.445 16 N -0.369 5.369 17 C 0.042 3.958 18 C -0.097 4.097 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.076 4.076 23 Cl -0.047 7.047 24 C -0.120 4.120 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.752 4.702 -26.525 27.199 hybrid contribution 1.153 0.673 1.188 1.788 sum 4.906 5.375 -25.337 26.361 Atomic orbital electron populations 1.21573 0.97410 0.98849 0.99533 1.18968 0.92940 0.91082 0.86098 1.00036 1.21570 1.31875 1.12717 0.91824 0.92843 1.25671 0.95141 0.95668 1.01812 1.69997 1.37282 1.23808 1.24270 0.85515 0.78770 0.78291 0.78791 1.20187 1.19551 1.20517 1.60395 1.33158 1.32676 1.05079 1.21875 1.02613 0.94628 0.89883 1.20801 0.76665 0.87077 0.84760 1.90674 1.50941 1.17675 1.85242 1.45897 1.67739 1.14740 1.08533 1.20135 1.00485 0.93225 0.81987 1.19692 0.94329 0.98542 0.97107 1.21481 0.98156 0.97835 0.94015 1.21465 0.98173 0.94998 0.97525 1.21420 0.91648 1.00032 0.99315 1.21057 0.89554 0.98327 0.98653 1.98383 1.37183 1.73688 1.95399 1.21064 0.98843 0.95477 0.96608 0.95777 0.92115 0.95149 0.92691 0.84806 0.87498 0.91913 0.74996 0.91279 0.90460 0.83714 0.82083 0.83182 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 9.19 71.98 0.66 -5.05 16 2 C 0.22 11.11 2.60 44.17 0.11 11.22 16 3 H -0.02 -0.97 7.80 -2.39 -0.02 -0.99 16 4 C -0.54 -30.44 8.59 25.60 0.22 -30.22 16 5 H 0.05 3.02 7.62 -2.91 -0.02 3.00 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.91 -52.23 11.32 21.45 0.24 -51.99 16 8 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 N -0.68 -30.44 5.93 -499.46 -2.96 -33.40 16 13 C 0.04 1.45 5.97 85.56 0.51 1.96 16 14 C 0.52 16.39 7.87 87.66 0.69 17.07 16 15 O -0.57 -22.78 16.20 -3.04 -0.05 -22.83 16 16 N -0.72 -15.49 5.55 -466.78 -2.59 -18.08 16 17 C 0.16 3.16 5.80 85.63 0.50 3.66 16 18 C -0.10 -1.44 5.25 -19.87 -0.10 -1.54 16 19 C -0.10 -1.14 9.70 22.27 0.22 -0.92 16 20 C -0.10 -0.98 10.05 22.27 0.22 -0.76 16 21 C -0.11 -1.20 9.83 22.29 0.22 -0.98 16 22 C -0.05 -0.73 6.32 22.32 0.14 -0.59 16 23 Cl -0.08 -1.17 28.96 -2.72 -0.08 -1.25 16 24 C -0.10 -1.58 9.49 22.29 0.21 -1.37 16 25 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 27 H 0.03 1.29 7.45 -2.38 -0.02 1.27 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.33 15.55 7.92 -89.70 -0.71 14.84 16 30 H 0.11 3.32 7.44 -2.39 -0.02 3.30 16 31 H 0.06 1.99 8.05 -2.39 -0.02 1.97 16 32 H 0.41 6.86 8.46 -92.70 -0.78 6.07 16 33 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 34 H 0.08 1.54 8.08 -2.38 -0.02 1.52 16 35 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 38 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -67.28 340.43 0.23 -67.04 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.41 Total: 20.61 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.05 Total: -6.15 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -5.31 Total: -103.47 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -67.28 0.23 -67.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.539 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds