Wall clock time and date at job start Tue Mar 31 2020 08:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47210 * 2 1 4 4 C 1.50696 * 109.47241 * 239.99521 * 2 1 3 5 5 H 1.08000 * 120.00207 * 245.41338 * 4 2 1 6 6 C 1.37881 * 119.99986 * 65.41511 * 4 2 1 7 7 N 1.31515 * 119.99679 * 9.03729 * 6 4 2 8 8 Si 1.86794 * 120.00230 * 189.04275 * 6 4 2 9 9 H 1.48503 * 109.47252 * 84.99215 * 8 6 4 10 10 H 1.48497 * 109.47313 * 204.99111 * 8 6 4 11 11 H 1.48500 * 109.47272 * 324.99701 * 8 6 4 12 12 N 1.46906 * 109.47018 * 119.99774 * 2 1 3 13 13 C 1.46898 * 111.00027 * 274.99951 * 12 2 1 14 14 H 1.08998 * 109.47255 * 34.99877 * 13 12 2 15 15 C 1.53008 * 109.47172 * 275.00015 * 13 12 2 16 16 C 1.50695 * 109.47221 * 155.00336 * 13 12 2 17 17 O 1.21294 * 120.00073 * 359.97438 * 16 13 12 18 18 N 1.34776 * 120.00149 * 180.02562 * 16 13 12 19 19 C 1.39976 * 120.00068 * 184.97643 * 18 16 13 20 20 C 1.38868 * 120.05811 * 211.98078 * 19 18 16 21 21 C 1.38102 * 119.93774 * 179.79536 * 20 19 18 22 22 C 1.38382 * 120.06103 * 0.48653 * 21 20 19 23 23 Cl 1.73604 * 119.94144 * 179.72455 * 22 21 20 24 24 C 1.38382 * 120.11706 * 359.74505 * 22 21 20 25 25 C 1.38114 * 120.05358 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47175 * 183.74104 * 1 2 3 27 27 H 1.09007 * 109.46841 * 303.74056 * 1 2 3 28 28 H 1.09000 * 109.47090 * 63.73986 * 1 2 3 29 29 H 0.96999 * 119.99966 * 179.97438 * 7 6 4 30 30 H 1.00900 * 111.00106 * 38.95486 * 12 2 1 31 31 H 1.08997 * 109.47083 * 180.02562 * 15 13 12 32 32 H 1.08995 * 109.46777 * 60.00050 * 15 13 12 33 33 H 1.08998 * 109.46918 * 300.00069 * 15 13 12 34 34 H 0.97002 * 120.00275 * 4.98065 * 18 16 13 35 35 H 1.08003 * 120.02662 * 0.02562 * 20 19 18 36 36 H 1.08008 * 119.96954 * 180.23299 * 21 20 19 37 37 H 1.07997 * 119.97430 * 179.97438 * 24 22 21 38 38 H 1.07999 * 120.02573 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5793 -1.6367 -1.1336 6 6 1.7938 -0.1780 -2.4796 7 7 1.2881 1.0307 -2.5936 8 14 2.1887 -1.1733 -4.0102 9 1 1.0455 -2.0661 -4.3288 10 1 2.4308 -0.2532 -5.1503 11 1 3.4037 -1.9923 -3.7683 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2577 0.9330 2.2907 15 6 3.4112 0.9810 2.3224 16 6 1.9787 -0.5675 3.6259 17 8 1.8632 -1.7743 3.5856 18 7 2.0131 0.0668 4.8146 19 6 2.0217 -0.6732 6.0027 20 6 1.4161 -0.1637 7.1438 21 6 1.4224 -0.8977 8.3136 22 6 2.0403 -2.1354 8.3521 23 17 2.0526 -3.0523 9.8262 24 6 2.6487 -2.6432 7.2177 25 6 2.6411 -1.9153 6.0440 26 1 -0.3633 -1.0255 0.0671 27 1 -0.3633 0.5708 0.8546 28 1 -0.3633 0.4547 -0.9216 29 1 1.1206 1.4054 -3.4724 30 1 1.4496 -1.4979 1.4101 31 1 3.4579 1.6596 3.1740 32 1 3.4862 1.5524 1.3973 33 1 4.2360 0.2706 2.3786 34 1 2.0318 1.0361 4.8468 35 1 0.9373 0.8040 7.1154 36 1 0.9483 -0.5037 9.2005 37 1 3.1306 -3.6092 7.2504 38 1 3.1165 -2.3119 5.1590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609449270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:31 Heat of formation + Delta-G solvation = -17.069855 kcal Electronic energy + Delta-G solvation = -20975.764224 eV Core-core repulsion = 17650.862167 eV Total energy + Delta-G solvation = -3324.902058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.72185 -38.85709 -36.75093 -36.03988 -34.75245 -32.98833 -31.30471 -30.82650 -29.22968 -27.13044 -25.18363 -24.28258 -23.28271 -22.16218 -20.39507 -19.67630 -18.16787 -17.29405 -16.79946 -16.09079 -15.73002 -15.16076 -14.71166 -14.62753 -14.37602 -13.92753 -13.72070 -13.51728 -12.82087 -12.72685 -12.53357 -12.13235 -11.99683 -11.92845 -11.74371 -11.61461 -11.44095 -11.06548 -10.94179 -10.86180 -10.57638 -10.31118 -10.22010 -9.95425 -9.60713 -9.25478 -9.07290 -8.35635 -8.23629 -7.39812 -6.03841 -4.02790 0.86387 1.06911 1.94187 2.58947 2.91151 3.33213 3.39152 3.43632 3.47695 4.42883 4.50788 4.64010 4.75561 5.01189 5.03148 5.18022 5.27714 5.29619 5.46778 5.58475 5.67837 5.75797 5.95107 6.02639 6.05377 6.20233 6.21024 6.53947 6.57190 6.68467 6.71208 6.95716 7.14177 7.29108 7.55809 7.85464 8.07759 8.15028 8.47167 8.54250 9.03975 9.60988 11.05717 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.038636 B = 0.002679 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.543120 B =10450.119841 C =10749.340385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.210 3.790 3 H 0.044 0.956 4 C -0.496 4.496 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.666 5.666 13 C 0.070 3.930 14 H 0.065 0.935 15 C -0.133 4.133 16 C 0.516 3.484 17 O -0.507 6.507 18 N -0.678 5.678 19 C 0.163 3.837 20 C -0.141 4.141 21 C -0.090 4.090 22 C -0.058 4.058 23 Cl -0.078 7.078 24 C -0.088 4.088 25 C -0.112 4.112 26 H 0.031 0.969 27 H 0.008 0.992 28 H 0.074 0.926 29 H 0.260 0.740 30 H 0.340 0.660 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.413 0.587 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 0.354 21.889 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 H 0.062 0.938 4 C -0.534 4.534 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.300 5.300 13 C -0.044 4.044 14 H 0.082 0.918 15 C -0.191 4.191 16 C 0.304 3.696 17 O -0.380 6.380 18 N -0.324 5.324 19 C 0.068 3.932 20 C -0.162 4.162 21 C -0.109 4.109 22 C -0.085 4.085 23 Cl -0.049 7.049 24 C -0.107 4.107 25 C -0.133 4.133 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.161 0.839 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.249 0.751 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.684 -0.381 21.572 21.641 hybrid contribution -0.934 0.102 -0.530 1.079 sum 0.750 -0.278 21.042 21.057 Atomic orbital electron populations 1.22427 1.01112 0.98762 1.00224 1.19290 0.89073 0.95080 0.86281 0.93826 1.21062 1.34568 1.08337 0.89475 0.91823 1.24929 0.95561 0.94777 0.99013 1.69952 1.45569 1.14312 1.23755 0.86560 0.78791 0.79969 0.82393 1.20712 1.21467 1.19869 1.60907 1.59213 1.08301 1.01562 1.21496 0.99370 0.95180 0.88327 0.91753 1.21747 0.95880 0.99336 1.02117 1.21455 0.74197 0.88894 0.85063 1.90688 1.46028 1.14481 1.86761 1.43760 1.73969 1.10530 1.04097 1.17904 0.95957 0.93190 0.86152 1.20840 1.01634 1.01642 0.92058 1.20787 0.98969 0.92759 0.98403 1.20867 1.04891 0.94522 0.88227 1.98359 1.97606 1.74002 1.34946 1.20964 0.98703 1.00315 0.90727 1.21242 0.99192 0.94287 0.98550 0.94963 0.97340 0.90721 0.93021 0.83933 0.93356 0.90471 0.91738 0.75088 0.84751 0.84725 0.84655 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 9.03 37.16 0.34 -3.49 16 2 C 0.21 5.08 2.25 -68.86 -0.15 4.93 16 3 H 0.04 1.13 7.06 -51.93 -0.37 0.77 16 4 C -0.50 -13.52 8.76 -34.44 -0.30 -13.83 16 5 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 6 C 0.06 1.59 5.18 -17.82 -0.09 1.50 16 7 N -0.90 -25.24 12.13 55.43 0.67 -24.57 16 8 Si 0.89 21.36 29.55 -169.99 -5.02 16.33 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.67 -13.98 5.92 -102.17 -0.60 -14.59 16 13 C 0.07 1.15 2.84 -68.86 -0.20 0.95 16 14 H 0.06 1.03 7.14 -51.93 -0.37 0.65 16 15 C -0.13 -1.92 9.30 37.16 0.35 -1.58 16 16 C 0.52 7.82 6.93 -10.99 -0.08 7.74 16 17 O -0.51 -9.30 13.25 5.55 0.07 -9.23 16 18 N -0.68 -7.65 5.20 -9.85 -0.05 -7.70 16 19 C 0.16 1.88 6.30 -83.67 -0.53 1.35 16 20 C -0.14 -1.30 9.96 -39.40 -0.39 -1.69 16 21 C -0.09 -0.82 9.82 -39.58 -0.39 -1.21 16 22 C -0.06 -0.59 6.32 -39.48 -0.25 -0.84 16 23 Cl -0.08 -0.74 28.95 -51.86 -1.50 -2.24 16 24 C -0.09 -0.96 9.82 -39.57 -0.39 -1.35 16 25 C -0.11 -1.40 8.66 -39.40 -0.34 -1.74 16 26 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 27 H 0.01 0.16 7.48 -51.93 -0.39 -0.23 16 28 H 0.07 1.90 6.80 -51.93 -0.35 1.54 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.34 7.36 7.14 -39.29 -0.28 7.08 16 31 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 32 H 0.08 1.26 7.43 -51.93 -0.39 0.88 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.41 3.34 8.39 -40.82 -0.34 2.99 16 35 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.15 2.09 6.33 -52.49 -0.33 1.75 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -30.01 333.48 -8.71 -38.72 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.87 Total: 7.50 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.43 Total: -9.25 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.02 Total: -46.86 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.01 -8.71 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609449270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.647 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds