Wall clock time and date at job start Tue Mar 31 2020 07:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47052 * 2 1 4 4 N 1.46502 * 109.46879 * 119.99757 * 2 1 3 5 5 C 1.46498 * 120.00171 * 299.99800 * 4 2 1 6 6 C 1.50696 * 109.47329 * 270.00120 * 5 4 2 7 7 H 1.08005 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00102 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00064 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00071 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46849 * 60.00398 * 10 8 6 12 12 H 1.48500 * 109.47254 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47104 * 300.00338 * 10 8 6 14 14 C 1.34776 * 119.99587 * 119.99609 * 4 2 1 15 15 O 1.21285 * 119.99863 * 179.97438 * 14 4 2 16 16 C 1.50695 * 120.00456 * 0.02562 * 14 4 2 17 17 C 1.50694 * 109.47575 * 179.97438 * 16 14 4 18 18 C 1.38233 * 119.60308 * 124.99717 * 17 16 14 19 19 C 1.38613 * 119.17625 * 180.02562 * 18 17 16 20 20 C 1.38780 * 118.40577 * 0.25575 * 19 18 17 21 21 Cl 1.73608 * 120.42624 * 179.72626 * 20 19 18 22 22 C 1.38302 * 119.13930 * 359.50003 * 20 19 18 23 23 N 1.31846 * 119.60674 * 305.02221 * 17 16 14 24 24 H 1.09007 * 109.47291 * 300.00366 * 1 2 3 25 25 H 1.09004 * 109.47070 * 60.00040 * 1 2 3 26 26 H 1.08991 * 109.47527 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46962 * 239.99884 * 2 1 3 28 28 H 1.09007 * 109.47077 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47229 * 299.99577 * 3 2 1 30 30 H 1.08999 * 109.47703 * 60.00200 * 3 2 1 31 31 H 1.09000 * 109.47142 * 30.00316 * 5 4 2 32 32 H 1.08998 * 109.47169 * 149.99849 * 5 4 2 33 33 H 0.97001 * 120.00236 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47071 * 59.99079 * 16 14 4 35 35 H 1.08995 * 109.46890 * 299.99796 * 16 14 4 36 36 H 1.08002 * 120.41515 * 0.04798 * 18 17 16 37 37 H 1.08002 * 120.79267 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.62475 * 180.23223 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5432 1.0357 2.3457 8 6 2.5816 1.4101 4.2144 9 7 1.5589 1.1250 4.9906 10 14 3.8696 2.6391 4.7802 11 1 3.9251 3.7736 3.8237 12 1 3.5108 3.1466 6.1289 13 1 5.1963 1.9746 4.8376 14 6 2.7930 -1.7864 1.0725 15 8 3.1977 -2.3579 2.0628 16 6 3.1575 -2.3011 -0.2961 17 6 4.0242 -3.5261 -0.1579 18 6 3.6499 -4.7014 -0.7819 19 6 4.4534 -5.8229 -0.6484 20 6 5.6070 -5.7214 0.1164 21 17 6.6477 -7.0953 0.3245 22 6 5.9192 -4.5103 0.7067 23 7 5.1302 -3.4642 0.5572 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.6904 0.2975 2.4844 32 1 1.6237 -1.0225 3.2292 33 1 1.4732 1.5531 5.8568 34 1 3.7027 -1.5302 -0.8408 35 1 2.2494 -2.5578 -0.8414 36 1 2.7428 -4.7452 -1.3665 37 1 4.1856 -6.7547 -1.1243 38 1 6.8170 -4.4214 1.3004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786035321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:19 Heat of formation + Delta-G solvation = -10.095053 kcal Electronic energy + Delta-G solvation = -21558.191948 eV Core-core repulsion = 18233.592341 eV Total energy + Delta-G solvation = -3324.599607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44740 -38.92684 -36.77377 -35.88729 -33.02584 -32.53396 -32.42618 -30.79177 -28.74571 -26.83616 -26.54622 -23.83604 -23.22068 -22.05416 -21.14076 -18.15025 -17.15010 -16.90036 -16.47253 -16.31431 -15.81335 -14.96275 -14.61564 -14.19813 -14.14786 -13.65009 -13.43644 -13.21096 -13.11843 -12.73197 -12.31043 -12.16190 -12.07741 -11.65505 -11.60553 -11.54305 -11.30678 -11.12574 -10.88598 -10.82339 -10.53652 -10.34923 -9.98236 -9.90219 -9.50390 -9.44346 -9.01074 -8.68664 -8.36532 -7.59531 -5.98292 -4.01066 0.86061 1.13895 1.90645 3.35417 3.40066 3.42057 3.49323 3.57698 4.00456 4.27932 4.48807 4.56480 4.63271 4.83676 5.07526 5.18655 5.28381 5.36600 5.40826 5.51632 5.57061 5.62457 5.67144 5.81307 5.93043 6.01220 6.16430 6.26982 6.38392 6.44267 6.60978 6.98855 7.15411 7.51763 7.62526 7.96550 7.99038 8.31319 8.48898 8.97785 9.16986 9.62909 11.09859 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.004028 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.040804 B = 6949.948820 C = 8037.974780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.595 5.595 5 C 0.249 3.751 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.511 3.489 15 O -0.524 6.524 16 C -0.098 4.098 17 C 0.159 3.841 18 C -0.159 4.159 19 C -0.068 4.068 20 C -0.098 4.098 21 Cl -0.065 7.065 22 C 0.123 3.877 23 N -0.434 5.434 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 -10.457 -16.095 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.328 5.328 5 C 0.130 3.870 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.296 3.704 15 O -0.399 6.399 16 C -0.139 4.139 17 C 0.021 3.979 18 C -0.179 4.179 19 C -0.094 4.094 20 C -0.127 4.127 21 Cl -0.036 7.036 22 C -0.036 4.036 23 N -0.142 5.142 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.786 -10.031 -14.937 18.207 hybrid contribution 0.541 -0.187 0.016 0.573 sum 3.327 -10.218 -14.921 18.388 Atomic orbital electron populations 1.22165 0.95641 1.01737 1.02480 1.20992 0.94058 0.94218 0.87898 1.22145 1.01426 0.95700 1.02286 1.48305 1.49438 1.26404 1.08617 1.19202 0.95779 0.94887 0.77178 1.21414 1.08834 1.23275 1.02063 0.92388 1.24914 0.95710 0.97160 0.96349 1.69923 1.29577 1.43451 1.10705 0.86622 0.82196 0.81283 0.77707 1.20310 1.21321 1.20227 1.19843 0.79492 0.81312 0.89726 1.90711 1.52139 1.57928 1.39156 1.20774 0.99010 0.95335 0.98791 1.20863 0.91863 0.94183 0.91024 1.21950 1.01121 0.92555 1.02263 1.21423 0.92264 0.99474 0.96274 1.22115 0.95659 0.90711 1.04240 1.98365 1.66187 1.42685 1.96392 1.22835 0.98574 0.86371 0.95842 1.67695 1.03947 1.29966 1.12564 0.91281 0.92299 0.92956 0.90872 0.92697 0.93321 0.90046 0.94857 0.94216 0.92819 0.87290 0.87860 0.83921 0.83947 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.17 37.16 0.34 -1.91 16 2 C 0.13 2.07 3.17 -67.93 -0.22 1.85 16 3 C -0.16 -2.54 8.47 37.16 0.31 -2.22 16 4 N -0.59 -12.22 2.39 -167.48 -0.40 -12.62 16 5 C 0.25 6.38 4.59 -5.20 -0.02 6.35 16 6 C -0.52 -14.42 7.83 -34.44 -0.27 -14.69 16 7 H 0.06 1.63 7.63 -52.48 -0.40 1.23 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.51 10.51 7.60 -10.99 -0.08 10.43 16 15 O -0.52 -13.36 14.91 5.55 0.08 -13.28 16 16 C -0.10 -1.41 4.41 -29.04 -0.13 -1.54 16 17 C 0.16 2.38 5.76 -82.59 -0.48 1.90 16 18 C -0.16 -1.82 9.71 -39.44 -0.38 -2.20 16 19 C -0.07 -0.73 9.98 -39.24 -0.39 -1.13 16 20 C -0.10 -1.20 6.34 -39.36 -0.25 -1.45 16 21 Cl -0.06 -0.69 28.99 -51.86 -1.50 -2.19 16 22 C 0.12 1.76 10.99 -17.51 -0.19 1.57 16 23 N -0.43 -7.48 9.22 -9.45 -0.09 -7.56 16 24 H 0.07 1.12 6.66 -51.92 -0.35 0.78 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.90 5.77 -51.93 -0.30 0.60 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 31 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 32 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.11 1.40 7.79 -51.93 -0.40 0.99 16 35 H 0.10 1.09 7.51 -51.93 -0.39 0.70 16 36 H 0.14 1.15 7.95 -52.49 -0.42 0.73 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -34.11 334.23 -8.02 -42.13 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.01 Total: -1.19 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.85 Total: -1.43 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.25 Total: -46.11 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.11 -8.02 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786035321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.033 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds