Wall clock time and date at job start Tue Mar 31 2020 07:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47052 * 2 1 4 4 N 1.46502 * 109.46879 * 119.99757 * 2 1 3 5 5 C 1.46498 * 120.00171 * 299.99800 * 4 2 1 6 6 C 1.50696 * 109.47329 * 270.00120 * 5 4 2 7 7 H 1.08005 * 119.99794 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00102 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00064 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00071 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46849 * 60.00398 * 10 8 6 12 12 H 1.48500 * 109.47254 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47104 * 300.00338 * 10 8 6 14 14 C 1.34776 * 119.99587 * 119.99609 * 4 2 1 15 15 O 1.21285 * 119.99863 * 179.97438 * 14 4 2 16 16 C 1.50695 * 120.00456 * 0.02562 * 14 4 2 17 17 C 1.50694 * 109.47575 * 179.97438 * 16 14 4 18 18 C 1.38233 * 119.60308 * 124.99717 * 17 16 14 19 19 C 1.38613 * 119.17625 * 180.02562 * 18 17 16 20 20 C 1.38780 * 118.40577 * 0.25575 * 19 18 17 21 21 Cl 1.73608 * 120.42624 * 179.72626 * 20 19 18 22 22 C 1.38302 * 119.13930 * 359.50003 * 20 19 18 23 23 N 1.31846 * 119.60674 * 305.02221 * 17 16 14 24 24 H 1.09007 * 109.47291 * 300.00366 * 1 2 3 25 25 H 1.09004 * 109.47070 * 60.00040 * 1 2 3 26 26 H 1.08991 * 109.47527 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46962 * 239.99884 * 2 1 3 28 28 H 1.09007 * 109.47077 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47229 * 299.99577 * 3 2 1 30 30 H 1.08999 * 109.47703 * 60.00200 * 3 2 1 31 31 H 1.09000 * 109.47142 * 30.00316 * 5 4 2 32 32 H 1.08998 * 109.47169 * 149.99849 * 5 4 2 33 33 H 0.97001 * 120.00236 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47071 * 59.99079 * 16 14 4 35 35 H 1.08995 * 109.46890 * 299.99796 * 16 14 4 36 36 H 1.08002 * 120.41515 * 0.04798 * 18 17 16 37 37 H 1.08002 * 120.79267 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.62475 * 180.23223 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5432 1.0357 2.3457 8 6 2.5816 1.4101 4.2144 9 7 1.5589 1.1250 4.9906 10 14 3.8696 2.6391 4.7802 11 1 3.9251 3.7736 3.8237 12 1 3.5108 3.1466 6.1289 13 1 5.1963 1.9746 4.8376 14 6 2.7930 -1.7864 1.0725 15 8 3.1977 -2.3579 2.0628 16 6 3.1575 -2.3011 -0.2961 17 6 4.0242 -3.5261 -0.1579 18 6 3.6499 -4.7014 -0.7819 19 6 4.4534 -5.8229 -0.6484 20 6 5.6070 -5.7214 0.1164 21 17 6.6477 -7.0953 0.3245 22 6 5.9192 -4.5103 0.7067 23 7 5.1302 -3.4642 0.5572 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.6904 0.2975 2.4844 32 1 1.6237 -1.0225 3.2292 33 1 1.4732 1.5531 5.8568 34 1 3.7027 -1.5302 -0.8408 35 1 2.2494 -2.5578 -0.8414 36 1 2.7428 -4.7452 -1.3665 37 1 4.1856 -6.7547 -1.1243 38 1 6.8170 -4.4214 1.3004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786035321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:16 Heat of formation + Delta-G solvation = -32.147123 kcal Electronic energy + Delta-G solvation = -21559.148198 eV Core-core repulsion = 18233.592341 eV Total energy + Delta-G solvation = -3325.555857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.103 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -41.53213 -40.39353 -37.71177 -37.40773 -34.96553 -33.77534 -33.42422 -32.34875 -30.22363 -28.38998 -27.87292 -25.09646 -24.71185 -23.36426 -22.48088 -19.62218 -18.57706 -18.30525 -17.99534 -17.55826 -17.03326 -16.58981 -16.16464 -15.72791 -15.35935 -14.78801 -14.65304 -14.45780 -14.36916 -14.11363 -13.86377 -13.35593 -13.32197 -13.15737 -13.02327 -12.80792 -12.76649 -12.63185 -12.49429 -12.20913 -12.15862 -12.05543 -11.60894 -11.48479 -10.83678 -10.59240 -10.58618 -10.37480 -9.79698 -9.34500 -8.17657 -6.28940 -0.11203 0.23514 0.99644 1.34823 1.39254 1.45874 1.94036 2.31150 2.43714 2.75619 3.11866 3.25807 3.62677 3.75856 3.84298 4.00927 4.07028 4.21720 4.34980 4.47043 4.49153 4.61051 4.67591 4.87227 4.91630 4.94324 5.00950 5.07312 5.10861 5.17405 5.28033 5.49061 5.52982 5.62947 5.68212 5.95121 6.15188 6.77621 6.90600 6.98712 7.35155 7.60683 8.89133 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.004028 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.040804 B = 6949.948820 C = 8037.974780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.154 4.154 4 N -0.600 5.600 5 C 0.268 3.732 6 C -0.524 4.524 7 H 0.051 0.949 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.283 1.283 14 C 0.499 3.501 15 O -0.587 6.587 16 C -0.084 4.084 17 C 0.128 3.872 18 C -0.144 4.144 19 C -0.064 4.064 20 C -0.097 4.097 21 Cl -0.052 7.052 22 C 0.097 3.903 23 N -0.485 5.485 24 H 0.033 0.967 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.122 0.878 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.026 0.974 32 H -0.013 1.013 33 H 0.264 0.736 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -11.013 -19.533 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.331 5.331 5 C 0.146 3.854 6 C -0.562 4.562 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.184 1.184 12 H -0.205 1.205 13 H -0.209 1.209 14 C 0.287 3.713 15 O -0.467 6.467 16 C -0.124 4.124 17 C -0.010 4.010 18 C -0.163 4.163 19 C -0.090 4.090 20 C -0.126 4.126 21 Cl -0.023 7.023 22 C -0.061 4.061 23 N -0.194 5.194 24 H 0.053 0.947 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.005 0.995 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.171 0.829 36 H 0.203 0.797 37 H 0.196 0.804 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.447 -10.571 -18.432 21.389 hybrid contribution 0.646 -0.090 1.059 1.244 sum 3.093 -10.661 -17.373 20.616 Atomic orbital electron populations 1.22128 0.94226 1.02437 1.02651 1.21452 0.95240 0.93846 0.87233 1.22095 1.00513 0.96237 1.02321 1.48349 1.49607 1.26978 1.08204 1.18563 0.95037 0.92320 0.79463 1.21655 1.08895 1.23483 1.02216 0.93057 1.25768 0.97733 0.99134 0.96554 1.70044 1.31329 1.44681 1.11090 0.85621 0.78954 0.79335 0.77837 1.18406 1.20493 1.20856 1.21017 0.78009 0.80401 0.91848 1.90676 1.54259 1.59727 1.42002 1.20802 1.01240 0.95748 0.94574 1.21138 0.91829 0.95763 0.92301 1.22345 1.02025 0.90944 1.00989 1.21885 0.91113 1.00768 0.95277 1.22181 0.96342 0.90347 1.03773 1.98368 1.65976 1.41639 1.96346 1.22894 0.98894 0.87183 0.97110 1.67563 1.05671 1.31864 1.14274 0.94745 0.88399 0.92026 0.86000 0.94046 0.89087 0.94125 0.95640 0.99453 0.92704 0.85500 0.82946 0.79658 0.80414 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.17 71.98 0.66 -3.32 16 2 C 0.12 3.59 3.17 44.99 0.14 3.73 16 3 C -0.15 -4.71 8.47 71.98 0.61 -4.10 16 4 N -0.60 -24.84 2.39 -802.17 -1.91 -26.76 16 5 C 0.27 14.49 4.59 85.63 0.39 14.88 16 6 C -0.52 -30.47 7.83 25.60 0.20 -30.27 16 7 H 0.05 2.98 7.63 -2.91 -0.02 2.96 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 10 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 14 C 0.50 20.60 7.60 87.66 0.67 21.27 16 15 O -0.59 -31.37 14.91 -3.04 -0.05 -31.42 16 16 C -0.08 -2.18 4.41 29.10 0.13 -2.05 16 17 C 0.13 3.60 5.76 42.55 0.25 3.84 16 18 C -0.14 -2.75 9.71 22.36 0.22 -2.54 16 19 C -0.06 -1.18 9.98 22.49 0.22 -0.96 16 20 C -0.10 -2.25 6.34 22.41 0.14 -2.11 16 21 Cl -0.05 -1.03 28.99 -2.72 -0.08 -1.11 16 22 C 0.10 2.85 10.99 84.70 0.93 3.78 16 23 N -0.48 -16.94 9.22 -183.80 -1.69 -18.63 16 24 H 0.03 1.11 6.66 -2.38 -0.02 1.09 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.12 2.37 5.77 -2.39 -0.01 2.35 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.57 6.92 -2.39 -0.02 1.55 16 31 H 0.03 1.41 6.43 -2.39 -0.02 1.39 16 32 H -0.01 -0.81 7.42 -2.39 -0.02 -0.83 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.13 2.82 7.79 -2.39 -0.02 2.81 16 35 H 0.15 2.37 7.51 -2.39 -0.02 2.35 16 36 H 0.19 1.86 7.95 -2.91 -0.02 1.84 16 37 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -82.16 334.23 4.67 -77.50 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.06 Total: 6.30 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.02 Total: 2.99 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -3.32 Total: -102.62 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.42 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -82.16 4.67 -77.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786035321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.349 kcal (2) G-P(sol) polarization free energy of solvation -82.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds